Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.01G289300 Carya illinoinensis HOM05D004372 ORTHO05D004331 1.1e-39 166.0 77 100.0
TAR633G2336 Trochodendron aralioides HOM05D004372 ORTHO05D004331 1.1e-18 96.3 63 66.7
Nn2g11160 Nelumbo nucifera HOM05D004372 ORTHO05D004331 2.5e-18 95.1 77 59.7
TAR636G3128 Trochodendron aralioides HOM05D004372 ORTHO05D004331 7.2e-18 93.6 63 65.1
Haze_17088 Corylus avellana HOM05D004372 ORTHO05D004331 9.3e-18 93.2 63 65.1
Nn2g13398 Nelumbo nucifera HOM05D004372 ORTHO05D004331 1.2e-17 92.8 77 55.8
Eucgr.J01238 Eucalyptus grandis HOM05D004372 ORTHO05D004331 7.9e-17 90.1 65 63.1
FAN02G2532 Fragaria x ananassa HOM05D004372 ORTHO05D004331 2.3e-16 88.6 65 55.4
FvH4_6g13440 Fragaria vesca HOM05D004372 ORTHO05D004331 3.0e-16 88.2 63 57.1
FAN14G0518 Fragaria x ananassa HOM05D004372 ORTHO05D004331 3.0e-16 88.2 63 57.1
FAN09G4335 Fragaria x ananassa HOM05D004372 ORTHO05D004331 6.7e-16 87.0 63 57.1
Prupe.6G257600 Prunus persica HOM05D004372 ORTHO05D004331 2.5e-15 85.1 63 58.7
Hma1.2p1_1785F.1_g302220 Hydrangea macrophylla HOM05D004372 ORTHO05D004331 3.3e-15 84.7 68 57.4
A10p33400 Brassica napus HOM05D004372 ORTHO05D004331 7.4e-15 83.6 75 50.7
BolC9t60164H Brassica oleracea HOM05D004372 ORTHO05D004331 7.4e-15 83.6 75 50.7
FAN05G2794 Fragaria x ananassa HOM05D004372 ORTHO05D004331 7.4e-15 83.6 63 57.1
QL01p030934 Quercus lobata HOM05D004372 ORTHO05D004331 7.4e-15 83.6 63 57.1
Manes.07G117700 Manihot esculenta HOM05D004372 ORTHO05D004331 9.7e-15 83.2 67 58.2
HPP92_019243 Vanilla planifolia HOM05D004372 ORTHO05D004331 1.3e-14 82.8 70 52.9
MD04G1131100 Malus domestica HOM05D004372 ORTHO05D004331 1.6e-14 82.4 63 55.6
MBI14_g04662_MAGBIO Magnolia biondii HOM05D004372 ORTHO05D004331 2.2e-14 82.0 57 57.9
RcHm_v2.0_Chr3g0466321 Rosa chinensis HOM05D004372 ORTHO05D004331 2.2e-14 82.0 63 54.0
Atru.chr12.419 Acer truncatum HOM05D004372 ORTHO05D004331 4.8e-14 80.9 57 63.2
C09p74310 Brassica napus HOM05D004372 ORTHO05D004331 4.8e-14 80.9 75 49.3
LjContig00141g0021725 Lotus japonicus HOM05D004372 ORTHO05D004331 4.8e-14 80.9 63 60.3
Cfa001453 Carpinus fangiana HOM05D004372 ORTHO05D004331 6.3e-14 80.5 68 57.4
ClCG10G021220 Citrullus lanatus HOM05D004372 ORTHO05D004331 8.2e-14 80.1 63 54.0
Lsat_1_v5_gn_8_15240 Lactuca sativa HOM05D004372 ORTHO05D004331 8.2e-14 80.1 63 60.3
MBI05_g29695_MAGBIO Magnolia biondii HOM05D000093 ORTHO05D000814 8.2e-14 80.1 68 61.8
BolC2t06039H Brassica oleracea HOM05D004372 ORTHO05D004331 1.1e-13 79.7 67 50.7
Carub.0006s0106 Capsella rubella HOM05D004372 ORTHO05D004331 1.4e-13 79.3 77 49.4
Cpa.g.c34680 Carica papaya HOM05D004372 ORTHO05D004331 1.4e-13 79.3 70 54.3
THA.LOC109116790 Tarenaya hassleriana HOM05D004372 ORTHO05D004331 1.8e-13 79.0 69 58.0
BcaNung06028 Brassica carinata HOM05D004372 ORTHO05D004331 2.4e-13 78.6 67 50.7
C02p00390 Brassica napus HOM05D004372 ORTHO05D004331 2.4e-13 78.6 67 50.7
Glyma.02G248800 Glycine max HOM05D004372 ORTHO05D004331 2.4e-13 78.6 64 54.7
BraA02t04711Z Brassica rapa HOM05D004372 ORTHO05D004331 5.3e-13 77.4 64 53.1
Gohir.D09G150300 Gossypium hirsutum HOM05D004372 ORTHO05D004331 5.3e-13 77.4 60 61.7
Gorai.006G171600 Gossypium raimondii HOM05D004372 ORTHO05D004331 5.3e-13 77.4 60 61.7
HanXRQChr08g0220931 Helianthus annuus HOM05D004372 ORTHO05D004331 6.9e-13 77.0 63 54.0
Hma1.2p1_0936F.1_g238880 Hydrangea macrophylla HOM05D004372 ORTHO05D004331 6.9e-13 77.0 65 52.3
MD11G1097200 Malus domestica HOM05D004372 ORTHO05D004331 9.1e-13 76.6 64 56.2
MD12G1144200 Malus domestica HOM05D004372 ORTHO05D004331 1.2e-12 76.3 61 55.7
BraA10t45371Z Brassica rapa HOM05D004372 ORTHO05D004331 3.4e-12 74.7 75 48.0
Gohir.A09G154800 Gossypium hirsutum HOM05D004372 ORTHO05D004331 3.4e-12 74.7 60 60.0
Manes.10G028900 Manihot esculenta HOM05D004372 ORTHO05D004331 4.5e-12 74.3 66 50.0
Zm00001eb148250 Zea mays HOM05D004372 ORTHO05D004331 4.5e-12 74.3 62 53.2
MELO3C023871.2 Cucumis melo HOM05D004372 ORTHO05D004331 5.9e-12 73.9 63 55.6
Gorai.012G104900 Gossypium raimondii HOM05D004372 ORTHO05D004331 7.7e-12 73.6 63 55.6
CANSAT11G2039 Cannabis sativa HOM05D004372 ORTHO05D004331 1.0e-11 73.2 77 48.1
Haze_20817 Corylus avellana HOM05D004372 ORTHO05D004331 1.0e-11 73.2 68 51.5
Duzib150G1613 Durio zibethinus HOM05D004372 ORTHO05D004331 1.0e-11 73.2 65 49.2
Os01g0843700 Oryza sativa ssp. japonica HOM05D004372 ORTHO05D004331 1.0e-11 73.2 63 52.4
Potri.008G057600 Populus trichocarpa HOM05D004372 ORTHO05D004331 1.0e-11 73.2 64 54.7
CsaV3_5G008200 Cucumis sativus L. HOM05D004372 ORTHO05D004331 1.7e-11 72.4 61 55.7
Gohir.A04G083300 Gossypium hirsutum HOM05D004372 ORTHO05D004331 1.7e-11 72.4 63 55.6
Manes.02G130300 Manihot esculenta HOM05D004372 ORTHO05D004331 2.2e-11 72.0 63 50.8
Thecc.05G037100 Theobroma cacao HOM05D004372 ORTHO05D004331 2.2e-11 72.0 63 55.6
Potri.010G201900 Populus trichocarpa HOM05D004372 ORTHO05D004331 2.9e-11 71.6 64 51.6
Cpa.g.sc81.114 Carica papaya HOM05D004372 ORTHO05D004331 3.8e-11 71.2 67 50.7
CsaV3_3G034820 Cucumis sativus L. HOM05D004372 ORTHO05D004331 3.8e-11 71.2 63 47.6
Gohir.A05G094000 Gossypium hirsutum HOM05D004372 ORTHO05D004331 3.8e-11 71.2 61 52.5
Medtr5g080040 Medicago truncatula HOM05D004372 ORTHO05D004331 3.8e-11 71.2 60 50.0
Duzib106G0317 Durio zibethinus HOM05D004372 ORTHO05D004331 5.0e-11 70.9 63 55.6
Prupe.6G072300 Prunus persica HOM05D004372 ORTHO05D004331 5.0e-11 70.9 62 50.0
Thecc.09G318100 Theobroma cacao HOM05D004372 ORTHO05D004331 5.0e-11 70.9 65 49.2
Eucgr.K03114 Eucalyptus grandis HOM05D004372 ORTHO05D004331 6.5e-11 70.5 71 52.1
Gohir.D04G122000 Gossypium hirsutum HOM05D004372 ORTHO05D004331 6.5e-11 70.5 63 54.0
Cfa017356 Carpinus fangiana HOM05D004372 ORTHO05D004331 8.5e-11 70.1 68 50.0
Lsat_1_v5_gn_2_118420 Lactuca sativa HOM05D004372 ORTHO05D004331 8.5e-11 70.1 63 54.0
COL.COLO4_14778 Corchorus olitorius HOM05D004372 ORTHO05D004331 1.1e-10 69.7 63 55.6
MD03G1088000 Malus domestica HOM05D004372 ORTHO05D004331 1.4e-10 69.3 64 50.0
Manes.09G092400 Manihot esculenta HOM05D004372 ORTHO05D004331 1.4e-10 69.3 72 47.2
Oeu026714.1 Olea europaea HOM05D004372 ORTHO05D004331 1.4e-10 69.3 64 50.0
PGSC0003DMG400027224 Solanum tuberosum HOM05D004372 ORTHO05D004331 1.9e-10 68.9 59 50.8
MELO3C003142.2 Cucumis melo HOM05D004372 ORTHO05D004331 2.5e-10 68.6 71 49.3
Rhsim04G0158600 Rhododendron simsii HOM05D004372 ORTHO05D004331 2.5e-10 68.6 59 50.8
ClCG07G003460 Citrullus lanatus HOM05D004372 ORTHO05D004331 3.2e-10 68.2 62 54.8
Medtr5g080060 Medicago truncatula HOM05D004372 ORTHO05D004331 3.2e-10 68.2 60 48.3
CiPaw.13G091200 Carya illinoinensis HOM05D004372 ORTHO05D004331 4.2e-10 67.8 67 47.8
CiPaw.15G088800 Carya illinoinensis HOM05D004372 ORTHO05D004331 4.2e-10 67.8 66 43.9
TAR623G0224 Trochodendron aralioides HOM05D004372 ORTHO05D004331 4.2e-10 67.8 50 58.0
AT5G02220 Arabidopsis thaliana HOM05D004372 ORTHO05D004331 5.5e-10 67.4 77 46.8
Hma1.2p1_1889F.1_g306650 Hydrangea macrophylla HOM05D004372 ORTHO05D004331 5.5e-10 67.4 73 47.9
Hma1.2p1_2197F.1_g316913 Hydrangea macrophylla HOM05D004372 ORTHO05D004331 5.5e-10 67.4 73 47.9
Sed0010480 Sechium edule HOM05D004372 ORTHO05D004331 5.5e-10 67.4 67 46.3
CDE02G0964 Ceratophyllum demersum HOM05D000511 ORTHO05D000413 7.2e-10 67.0 63 47.6
MELO3C009251.2 Cucumis melo HOM05D004372 ORTHO05D004331 7.2e-10 67.0 63 46.0
Sp6g40230 Schrenkiella parvula HOM05D004372 ORTHO05D004331 7.2e-10 67.0 77 45.5
AL6G11450 Arabidopsis lyrata HOM05D004372 ORTHO05D004331 9.4e-10 66.6 77 45.5
C05p05520 Brassica napus HOM05D004372 ORTHO05D004331 9.4e-10 66.6 65 46.2
BolC5t29323H Brassica oleracea HOM05D004372 ORTHO05D004331 9.4e-10 66.6 65 46.2
Cc01_g13170 Coffea canephora HOM05D004372 ORTHO05D004331 1.2e-09 66.2 66 53.0
Peaxi162Scf00165g00075 Petunia axillaris HOM05D019299 ORTHO05D025949 1.2e-09 66.2 56 50.0
COL.COLO4_18555 Corchorus olitorius HOM05D004372 ORTHO05D004331 1.6e-09 65.9 65 47.7
Thhalv10015202m.g Eutrema salsugineum HOM05D004372 ORTHO05D004331 1.6e-09 65.9 63 49.2
Nitab4.5_0001326g0030 Nicotiana tabacum HOM05D004372 ORTHO05D004331 1.6e-09 65.9 61 45.9
Solyc05g053050.1 Solanum lycopersicum HOM05D004372 ORTHO05D004331 1.6e-09 65.9 66 47.0
Actinidia05322 Actinidia chinensis HOM05D004372 ORTHO05D004331 2.1e-09 65.5 62 48.4
Gohir.D05G094500 Gossypium hirsutum HOM05D004372 ORTHO05D004331 2.1e-09 65.5 65 47.7
Sed0017148 Sechium edule HOM05D004372 ORTHO05D004331 2.1e-09 65.5 61 50.8
Gorai.009G097700 Gossypium raimondii HOM05D004372 ORTHO05D004331 2.7e-09 65.1 65 47.7
Nitab4.5_0016190g0010 Nicotiana tabacum HOM05D004372 ORTHO05D004331 3.6e-09 64.7 69 43.5
Rhsim01G0230700 Rhododendron simsii HOM05D004372 ORTHO05D004331 3.6e-09 64.7 84 45.2
BcaC05g24693 Brassica carinata HOM05D004372 ORTHO05D004331 4.6e-09 64.3 65 44.6
AL1G17680 Arabidopsis lyrata HOM05D004372 ORTHO05D004331 7.9e-09 63.5 66 43.9
Glyma.14G067700 Glycine max HOM05D004372 ORTHO05D004331 7.9e-09 63.5 61 45.9
QL07p048809 Quercus lobata HOM05D004372 ORTHO05D004331 7.9e-09 63.5 69 44.9
Sp1g06230 Schrenkiella parvula HOM05D004372 ORTHO05D004331 1.0e-08 63.2 77 39.0
BcaB02g06736 Brassica carinata HOM05D004372 ORTHO05D004331 1.4e-08 62.8 65 43.1
A10p06030 Brassica napus HOM05D004372 ORTHO05D004331 1.8e-08 62.4 78 39.7
BraA10t42865Z Brassica rapa HOM05D004372 ORTHO05D004331 1.8e-08 62.4 78 39.7
CARHR211160 Cardamine hirsuta HOM05D004372 ORTHO05D004331 1.8e-08 62.4 77 44.2
Phvul.008G231900 Phaseolus vulgaris HOM05D004372 ORTHO05D004331 2.3e-08 62.0 64 45.3
THA.LOC109117276 Tarenaya hassleriana HOM05D004372 ORTHO05D004331 2.3e-08 62.0 67 46.3
CsaV3_4G025140 Cucumis sativus L. HOM05D004372 ORTHO05D004331 3.0e-08 61.6 62 45.2
Carub.0001s0682 Capsella rubella HOM05D004372 ORTHO05D004331 1.5e-07 59.3 51 47.1
Os03g0822400 Oryza sativa ssp. japonica HOM05D004372 ORTHO05D004331 1.5e-07 59.3 75 45.3
Aa31LG1G6940 Aethionema arabicum HOM05D004372 ORTHO05D004331 2.0e-07 58.9 56 44.6
CiPaw.09G194900 Carya illinoinensis HOM05D004372 ORTHO05D004331 2.0e-07 58.9 67 46.3
ATR0559G371 Amborella trichopoda HOM05D004372 ORTHO05D004331 3.3e-07 58.2 63 41.3
THA.LOC109117261 Tarenaya hassleriana HOM05D004372 ORTHO05D004331 4.4e-07 57.8 63 44.4
Zm00001eb211640 Zea mays HOM05D004372 ORTHO05D004331 5.7e-07 57.4 71 39.4
Lsat_1_v5_gn_5_169301 Lactuca sativa HOM05D004372 ORTHO05D004331 9.7e-07 56.6 70 41.4
Ah.16g102460 Amaranthus hybridus HOM05D004372 ORTHO05D004331 1.3e-06 56.2 62 43.5
AL8G23740 Arabidopsis lyrata HOM05D004372 ORTHO05D004331 1.3e-06 56.2 70 41.4
Migut.F00765 Erythranthe guttata HOM05D004372 ORTHO05D004331 1.3e-06 56.2 55 49.1
PGR004G0648 Punica granatum HOM05D004372 ORTHO05D004331 1.3e-06 56.2 63 39.7
Aa31LG1G22520 Aethionema arabicum HOM05D004372 ORTHO05D004331 1.7e-06 55.8 66 45.5
COL.COLO4_15084 Corchorus olitorius HOM05D022458 ORTHO05D025182 1.7e-06 55.8 79 44.3
Glyma.03G138300 Glycine max HOM05D003595 ORTHO05D004132 1.7e-06 55.8 75 34.7
HanXRQChr02g0056211 Helianthus annuus HOM05D003595 ORTHO05D004132 1.7e-06 55.8 58 46.6
Oeu001860.2 Olea europaea HOM05D004372 ORTHO05D292743 1.7e-06 55.8 97 32.0
SEGI_13071 Sequoiadendron giganteum HOM05D002383 ORTHO05D002515 1.7e-06 55.8 55 45.5
Solyc06g076310.1 Solanum lycopersicum HOM05D004372 ORTHO05D004331 1.7e-06 55.8 70 41.4
Sopen06g032730 Solanum pennellii HOM05D004372 ORTHO05D004331 1.7e-06 55.8 70 41.4
AL3G43490 Arabidopsis lyrata HOM05D004372 ORTHO05D004331 2.2e-06 55.5 70 41.4
MELO3C021579.2 Cucumis melo HOM05D002383 ORTHO05D002515 2.8e-06 55.1 55 43.6
Lj3g0010706 Lotus japonicus HOM05D004372 ORTHO05D004331 2.8e-06 55.1 64 40.6
Atru.chr8.1996 Acer truncatum HOM05D004372 ORTHO05D004331 3.7e-06 54.7 72 44.4
BcaB03g13391 Brassica carinata HOM05D004372 ORTHO05D004331 3.7e-06 54.7 65 35.4
Lalb_Chr03g0042351 Lupinus albus HOM05D004372 ORTHO05D004331 3.7e-06 54.7 67 38.8
Sc01g0004440 Simmondsia chinensis HOM05D004372 ORTHO05D004331 3.7e-06 54.7 55 45.5
PGSC0003DMG402008903 Solanum tuberosum HOM05D019299 ORTHO05D025949 3.7e-06 54.7 62 41.9
CsaV3_5G027140 Cucumis sativus L. HOM05D002383 ORTHO05D002515 4.8e-06 54.3 55 41.8
Medtr5g033220 Medicago truncatula HOM05D002383 ORTHO05D002515 4.8e-06 54.3 54 44.4
Medtr7g062230 Medicago truncatula HOM05D017754 ORTHO05D004331 4.8e-06 54.3 63 42.9
Phvul.008G119300 Phaseolus vulgaris HOM05D017754 ORTHO05D004331 4.8e-06 54.3 63 41.3
Potri.016G100000 Populus trichocarpa HOM05D004372 ORTHO05D004331 4.8e-06 54.3 57 47.4
VMungo1383G0344 Vigna mungo HOM05D017754 ORTHO05D004331 4.8e-06 54.3 63 41.3
CAN.G394.69 Capsicum annuum HOM05D004372 ORTHO05D004331 6.3e-06 53.9 57 36.8
Migut.J00317 Erythranthe guttata HOM05D019299 ORTHO05D004331 6.3e-06 53.9 52 40.4
Solyc09g010980.1 Solanum lycopersicum HOM05D019299 ORTHO05D025949 6.3e-06 53.9 58 44.8
Ca_25907_v3 Cicer arietinum L. HOM05D017754 ORTHO05D004331 8.2e-06 53.5 63 41.3
Ciclev10029728m.g Citrus clementina HOM05D004372 ORTHO05D004331 8.2e-06 53.5 57 45.6
Glyma.07G133800 Glycine max HOM05D017754 ORTHO05D004331 8.2e-06 53.5 63 41.3
Gohir.D10G233116 Gossypium hirsutum HOM05D022458 ORTHO05D025182 8.2e-06 53.5 56 50.0
Gorai.011G266500 Gossypium raimondii HOM05D022458 ORTHO05D025182 8.2e-06 53.5 56 50.0


User provided reference genes

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