Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.01G285600 Carya illinoinensis HOM05D007860 ORTHO05D009950 1.6e-28 128.6 63 100.0
CiPaw.01G286200 Carya illinoinensis HOM05D007860 ORTHO05D009950 1.8e-27 125.2 63 96.8
Cfa009596 Carpinus fangiana HOM05D007860 ORTHO05D009950 2.9e-25 117.9 63 87.3
Prupe.1G341800 Prunus persica HOM05D007860 ORTHO05D009950 4.3e-21 104.0 64 81.2
CAN.G786.12 Capsicum annuum HOM05D007860 ORTHO05D009950 1.6e-20 102.1 63 73.0
Cc00_g31060 Coffea canephora HOM05D007860 ORTHO05D009950 1.6e-20 102.1 64 76.6
Gohir.A07G000500 Gossypium hirsutum HOM05D007860 ORTHO05D009950 2.8e-20 101.3 59 78.0
Phvul.008G011200 Phaseolus vulgaris HOM05D007860 ORTHO05D009950 2.8e-20 101.3 63 76.2
Glyma.18G290700 Glycine max HOM05D007860 ORTHO05D009950 3.7e-20 100.9 63 74.6
Cc02_g07910 Coffea canephora HOM05D007860 ORTHO05D009950 4.8e-20 100.5 64 75.0
Thecc.10G043200 Theobroma cacao HOM05D007860 ORTHO05D009950 4.8e-20 100.5 62 74.2
RcHm_v2.0_Chr4g0445811 Rosa chinensis HOM05D007860 ORTHO05D009950 6.3e-20 100.1 62 75.8
Peaxi162Scf00760g00224 Petunia axillaris HOM05D007860 ORTHO05D009950 1.1e-19 99.4 61 73.8
Solyc04g150108.1 Solanum lycopersicum HOM05D007860 ORTHO05D009950 1.4e-19 99.0 63 71.4
PGSC0003DMG400027747 Solanum tuberosum HOM05D007860 ORTHO05D009950 1.4e-19 99.0 63 71.4
Glyma.02G092000 Glycine max HOM05D007860 ORTHO05D009950 1.8e-19 98.6 63 73.0
Gohir.D04G062700 Gossypium hirsutum HOM05D007860 ORTHO05D009950 1.8e-19 98.6 59 76.3
Gorai.012G070100 Gossypium raimondii HOM05D007860 ORTHO05D009950 1.8e-19 98.6 59 76.3
CDE08G0617 Ceratophyllum demersum HOM05D007860 ORTHO05D009950 2.0e-18 95.1 58 69.0
Nn4g22694 Nelumbo nucifera HOM05D007860 ORTHO05D009950 2.0e-18 95.1 63 76.2
TWI63G0334 Tripterygium wilfordii HOM05D007860 ORTHO05D009950 2.0e-18 95.1 61 77.0
Gohir.A05G349600 Gossypium hirsutum HOM05D007860 ORTHO05D009950 2.6e-18 94.7 59 72.9
Medtr7g026210 Medicago truncatula HOM05D007860 ORTHO05D009950 2.6e-18 94.7 63 69.8
Lj1g0016082 Lotus japonicus HOM05D007860 ORTHO05D009950 4.5e-18 94.0 61 70.5
TPR.G1333 Trifolium pratense HOM05D007860 ORTHO05D009950 4.5e-18 94.0 62 67.7
Aqoxy4G02946 Aquilegia oxysepala HOM05D007860 ORTHO05D009950 1.3e-17 92.4 63 71.4
Lsat_1_v5_gn_8_15760 Lactuca sativa HOM05D007860 ORTHO05D009950 1.7e-17 92.0 63 69.8
Sabra10G0157800 Salix brachista HOM05D007860 ORTHO05D009950 1.7e-17 92.0 64 70.3
Hund16092 Selenicereus undatus HOM05D007860 ORTHO05D009950 1.7e-17 92.0 60 76.7
HanXRQChr08g0220681 Helianthus annuus HOM05D007860 ORTHO05D009950 2.9e-17 91.3 63 71.4
vmacro04194 Vaccinium macrocarpon HOM05D007860 ORTHO05D009950 5.0e-17 90.5 61 65.6
COL.COLO4_15031 Corchorus olitorius HOM05D007860 ORTHO05D009950 8.5e-17 89.7 62 64.5
Lalb_Chr11g0073451 Lupinus albus HOM05D007860 ORTHO05D009950 8.5e-17 89.7 63 66.7
Migut.E01407 Erythranthe guttata HOM05D007860 ORTHO05D009950 3.2e-16 87.8 61 68.9
Migut.E01421 Erythranthe guttata HOM05D007860 ORTHO05D009950 3.2e-16 87.8 61 68.9
Nn3g16785 Nelumbo nucifera HOM05D007860 ORTHO05D009950 3.2e-16 87.8 47 78.7
Potri.010G204200 Populus trichocarpa HOM05D007860 ORTHO05D009950 3.2e-16 87.8 64 68.8
SalBow8G2293 Salvia bowleyana HOM05D007860 ORTHO05D009950 3.2e-16 87.8 61 63.9
Aa31LG3G410 Aethionema arabicum HOM05D007860 ORTHO05D009950 4.2e-16 87.4 63 68.3
DCAR_011692 Daucus carota HOM05D007860 ORTHO05D009950 5.5e-16 87.0 60 70.0
unitig_747.g21379 Utricularia gibba HOM05D007860 ORTHO05D009950 5.5e-16 87.0 58 69.0
Lalb_Chr10g0091671 Lupinus albus HOM05D007860 ORTHO05D009950 7.2e-16 86.7 55 72.7
Manes.09G185000 Manihot esculenta HOM05D007860 ORTHO05D009950 9.3e-16 86.3 60 63.3
Sed0021911 Sechium edule HOM05D007860 ORTHO05D009950 2.1e-15 85.1 51 76.5
THA.LOC104817766 Tarenaya hassleriana HOM05D007860 ORTHO05D009950 2.7e-15 84.7 55 72.7
Oeu017367.1 Olea europaea HOM05D007860 ORTHO05D009950 3.6e-15 84.3 61 67.2
Zm00001eb205410 Zea mays HOM05D007860 ORTHO05D009950 4.6e-15 84.0 51 72.5
VMungo1383G1282 Vigna mungo HOM05D007860 ORTHO05D009950 1.8e-14 82.0 50 76.0
AT4G26055 Arabidopsis thaliana HOM05D007860 ORTHO05D009950 6.7e-14 80.1 59 64.4
MBI05_g22876_MAGBIO Magnolia biondii HOM05D007860 ORTHO05D009950 6.7e-14 80.1 54 66.7
HPP92_012590 Vanilla planifolia HOM05D007860 ORTHO05D009950 6.7e-14 80.1 47 72.3
MELO3C033702.2 Cucumis melo HOM05D007860 ORTHO05D009950 8.7e-14 79.7 57 63.2
CsaV3_5G026630 Cucumis sativus L. HOM05D007860 ORTHO05D009950 8.7e-14 79.7 58 60.3
AL7G26930 Arabidopsis lyrata HOM05D007860 ORTHO05D009950 1.1e-13 79.3 61 65.6
Sc10g0001510 Simmondsia chinensis HOM05D007860 ORTHO05D009950 1.5e-13 79.0 43 79.1
Actinidia13876 Actinidia chinensis HOM05D007860 ORTHO05D009950 2.5e-13 78.2 45 71.1
SpUn0576_0010 Schrenkiella parvula HOM05D007860 ORTHO05D009950 3.3e-13 77.8 59 66.1
Ciclev10033443m.g Citrus clementina HOM05D007860 ORTHO05D009950 4.3e-13 77.4 85 51.8
PSO170G0009 Papaver somniferum HOM05D007860 ORTHO05D009950 5.7e-13 77.0 51 74.5
CSS0034636 Camellia sinensis var. sinensis HOM05D007860 ORTHO05D009950 9.7e-13 76.3 43 76.7
Carub.0007s1490 Capsella rubella HOM05D007860 ORTHO05D009950 1.6e-12 75.5 47 74.5
Psat3g182840 Pisum sativum HOM05D007860 ORTHO05D009950 1.6e-12 75.5 43 74.4
CARHR233560 Cardamine hirsuta HOM05D007860 ORTHO05D009950 2.8e-12 74.7 59 64.4
arahy.Tifrunner.gnm1.ann1.WKZY2Y Arachis hypogaea HOM05D007860 ORTHO05D009950 3.7e-12 74.3 42 76.2
Thhalv10026736m.g Eutrema salsugineum HOM05D007860 ORTHO05D009950 3.7e-12 74.3 50 74.0
Sp6g18800 Schrenkiella parvula HOM05D007860 ORTHO05D009950 3.7e-12 74.3 58 65.5
FAN22G0325 Fragaria x ananassa HOM05D007860 ORTHO05D009950 4.8e-12 73.9 65 56.9
BraA03t10609Z Brassica rapa HOM05D007860 ORTHO05D009950 8.2e-12 73.2 52 71.2
MD16G1008700 Malus domestica HOM05D007860 ORTHO05D009950 8.2e-12 73.2 43 76.7
AT5G57080 Arabidopsis thaliana HOM05D007860 ORTHO05D009950 2.4e-11 71.6 48 72.9
BcaB01g04442 Brassica carinata HOM05D007860 ORTHO05D009950 3.1e-11 71.2 52 69.2
EL10Ac2g04657 Beta vulgaris HOM05D007860 ORTHO05D009950 6.9e-11 70.1 48 62.5
BcaC07g38219 Brassica carinata HOM05D007860 ORTHO05D009950 6.9e-11 70.1 50 70.0
A08p20930 Brassica napus HOM05D007860 ORTHO05D009950 6.9e-11 70.1 50 70.0
C08p09770 Brassica napus HOM05D002589 ORTHO05D002742 6.9e-11 70.1 50 70.0
BolC8t48648H Brassica oleracea HOM05D002589 ORTHO05D002742 6.9e-11 70.1 50 70.0
BraA08t34046Z Brassica rapa HOM05D007860 ORTHO05D009950 6.9e-11 70.1 50 70.0
ClCG09G019790 Citrullus lanatus HOM05D007860 ORTHO05D009950 9.1e-11 69.7 44 68.2
A03p56460 Brassica napus HOM05D002589 ORTHO05D002742 4.5e-10 67.4 59 57.6
BraA03t14716Z Brassica rapa HOM05D007860 ORTHO05D009950 4.5e-10 67.4 59 57.6
C07p54670 Brassica napus HOM05D007860 ORTHO05D009950 5.9e-10 67.0 50 66.0
BolC7t45956H Brassica oleracea HOM05D007860 ORTHO05D009950 5.9e-10 67.0 50 66.0
BcaNung07291 Brassica carinata HOM05D007860 ORTHO05D009950 1.3e-09 65.9 52 69.2
SEGI_33557 Sequoiadendron giganteum HOM05D007860 ORTHO05D009950 6.5e-09 63.5 45 62.2
RcHm_v2.0_Chr4g0445941 Rosa chinensis HOM05D007860 ORTHO05D009950 1.8e-06 55.5 45 66.7


User provided reference genes

Program Settings