Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.01G279600 Carya illinoinensis HOM05D000283 ORTHO05D006673 0.0e+00 2646.3 1369 100.0
CiPaw.02G178500 Carya illinoinensis HOM05D000283 ORTHO05D006673 0.0e+00 1580.8 1509 61.8
Cfa001559 Carpinus fangiana HOM05D000283 ORTHO05D005391 0.0e+00 1540.8 1514 60.9
QL08p057512 Quercus lobata HOM05D000283 ORTHO05D006673 0.0e+00 1495.7 1389 62.1
Dinv25941 Davidia involucrata HOM05D000283 ORTHO05D004861 0.0e+00 1089.7 1389 50.4
Prupe.2G224500 Prunus persica HOM05D000283 ORTHO05D006673 5.1e-300 1035.0 1399 48.3
Ciclev10033332m.g Citrus clementina HOM05D000283 ORTHO05D006673 1.8e-284 983.4 1397 44.8
Duzib114G0075 Durio zibethinus HOM05D000283 ORTHO05D006673 5.8e-280 968.4 1331 46.3
CSS0006513 Camellia sinensis var. sinensis HOM05D000283 ORTHO05D006673 6.5e-279 964.9 1405 46.5
CSS0040218 Camellia sinensis var. sinensis HOM05D000283 ORTHO05D006673 5.5e-278 961.8 1402 46.4
Atru.chr12.593 Acer truncatum HOM05D000283 ORTHO05D006673 7.9e-277 958.0 1290 47.9
Thecc.10G063100 Theobroma cacao HOM05D000283 ORTHO05D006673 2.4e-273 946.4 1288 46.1
RcHm_v2.0_Chr1g0365001 Rosa chinensis HOM05D000283 ORTHO05D006673 8.5e-271 937.9 1407 45.9
Glyma.10G292400 Glycine max HOM05D000283 ORTHO05D006673 2.4e-265 919.8 1431 44.0
MD07G1184600 Malus domestica HOM05D000283 ORTHO05D006673 9.1e-265 917.9 1304 47.2
Glyma.20G242400 Glycine max HOM05D000283 ORTHO05D006673 1.7e-263 913.7 1421 44.5
Gorai.012G066900 Gossypium raimondii HOM05D000283 ORTHO05D006673 8.5e-263 911.4 1324 44.5
COL.COLO4_29238 Corchorus olitorius HOM05D000283 ORTHO05D006673 8.8e-252 874.8 1269 45.1
arahy.Tifrunner.gnm1.ann1.SA4FWZ Arachis hypogaea HOM05D000283 ORTHO05D006673 3.7e-250 869.4 1430 42.3
arahy.Tifrunner.gnm1.ann1.U4C8JV Arachis hypogaea HOM05D000283 ORTHO05D006673 1.4e-249 867.5 1429 42.1
Gohir.A05G352800 Gossypium hirsutum HOM05D000283 ORTHO05D006673 4.1e-249 865.9 1344 42.6
MD01G1117200 Malus domestica HOM05D000283 ORTHO05D006673 1.2e-248 864.4 1313 45.6
Phvul.007G007900 Phaseolus vulgaris HOM05D000283 ORTHO05D006673 2.2e-247 860.1 1435 42.1
TWI38G0559 Tripterygium wilfordii HOM05D000283 ORTHO05D006673 4.2e-246 855.9 1388 42.4
Medtr1g115950 Medicago truncatula HOM05D000283 ORTHO05D006673 4.4e-243 845.9 1416 42.4
Potri.008G047600 Populus trichocarpa HOM05D000283 ORTHO05D006673 4.4e-243 845.9 1416 42.3
FAN06G2682 Fragaria x ananassa HOM05D000283 ORTHO05D006673 5.7e-243 845.5 1408 43.3
FvH4_7g20760 Fragaria vesca HOM05D000283 ORTHO05D006673 3.7e-242 842.8 1409 43.5
FAN06G0550 Fragaria x ananassa HOM05D000283 ORTHO05D006673 5.4e-241 839.0 1409 43.3
VMungo0720G0439 Vigna mungo HOM05D000283 ORTHO05D006673 5.4e-241 839.0 1426 41.9
Gohir.D04G060201 Gossypium hirsutum HOM05D000283 ORTHO05D006673 9.1e-241 838.2 1324 42.3
Manes.10G039300 Manihot esculenta HOM05D000283 ORTHO05D006673 1.0e-239 834.7 1385 42.8
FAN03G1488 Fragaria x ananassa HOM05D000283 ORTHO05D006673 2.2e-239 833.6 1411 43.4
Potri.010G213800 Populus trichocarpa HOM05D000283 ORTHO05D006673 2.9e-239 833.2 1411 43.2
Hma1.2p1_0348F.1_g131680 Hydrangea macrophylla HOM05D000283 ORTHO05D006673 8.3e-234 815.1 1405 42.7
Duzib106G1116 Durio zibethinus HOM05D000283 ORTHO05D006673 1.4e-233 814.3 1476 41.9
TPR.G10427 Trifolium pratense HOM05D000283 ORTHO05D006673 2.4e-233 813.5 1441 41.7
Haze_16971 Corylus avellana HOM05D000283 ORTHO05D006673 3.1e-233 813.1 962 56.0
FAN10G3387 Fragaria x ananassa HOM05D000283 ORTHO05D005391 5.9e-232 808.9 1405 42.4
Psat6g238520 Pisum sativum HOM05D000283 ORTHO05D006673 5.0e-231 805.8 1449 41.3
Sabra10G0165500 Salix brachista HOM05D000283 ORTHO05D006673 5.0e-231 805.8 1420 41.3
Manes.10G039200 Manihot esculenta HOM05D000283 ORTHO05D006673 2.8e-229 800.0 1386 41.8
Sabra08G0033700 Salix brachista HOM05D000283 ORTHO05D006673 9.5e-222 775.0 1409 40.6
Rhsim09G0155800 Rhododendron simsii HOM05D000283 ORTHO05D006673 1.2e-221 774.6 1427 41.7
Ca_11324_v3 Cicer arietinum L. HOM05D000283 ORTHO05D006673 7.8e-208 728.8 1125 44.8
TAR633G0056 Trochodendron aralioides HOM05D000283 ORTHO05D006673 3.0e-207 726.9 1438 39.5
TAR636G0162 Trochodendron aralioides HOM05D000283 ORTHO05D006673 4.7e-205 719.5 1435 40.6
Lj5g0015824 Lotus japonicus HOM05D000283 ORTHO05D006673 3.4e-203 713.4 1459 38.7
CANSAT56G3782 Cannabis sativa HOM05D000283 ORTHO05D006673 9.9e-203 711.8 1433 38.5
Lalb_Chr02g0143851 Lupinus albus HOM05D000283 ORTHO05D006673 2.3e-191 674.1 1195 41.6
Nn2g11490 Nelumbo nucifera HOM05D000283 ORTHO05D006673 7.1e-177 625.9 1326 37.9
ClCG09G020310 Citrullus lanatus HOM05D000283 ORTHO05D006673 6.3e-165 586.3 1470 34.8
Nitab4.5_0007221g0010 Nicotiana tabacum HOM05D000283 ORTHO05D006673 6.9e-156 556.2 1369 34.3
MSTRG.8954 Avicennia marina HOM05D000283 ORTHO05D006673 1.2e-155 555.4 1408 34.0
Eucgr.G02778 Eucalyptus grandis HOM05D000283 ORTHO05D006673 2.2e-154 551.2 1433 33.8
Nitab4.5_0006737g0060 Nicotiana tabacum HOM05D000283 ORTHO05D006673 2.2e-154 551.2 1369 34.6
SalBow6G2235 Salvia bowleyana HOM05D000283 ORTHO05D006673 2.2e-154 551.2 1409 34.9
Peaxi162Scf00135g00027 Petunia axillaris HOM05D000283 ORTHO05D006673 1.1e-153 548.9 1377 33.6
Aqoxy2G01934 Aquilegia oxysepala HOM05D000283 ORTHO05D006673 1.6e-152 545.0 1405 32.8
Lj8A92T85 Lonicera japonica HOM05D000283 ORTHO05D006673 3.9e-151 540.4 1321 36.1
Cc02_g08660 Coffea canephora HOM05D000283 ORTHO05D006673 1.5e-150 538.5 1406 33.8
Lalb_Chr02g0143831 Lupinus albus HOM05D000283 ORTHO05D006673 2.0e-147 528.1 1172 36.9
MSTRG.27328 Avicennia marina HOM05D000283 ORTHO05D006673 2.1e-144 518.1 1426 33.9
Sopen04g005360 Solanum pennellii HOM05D000283 ORTHO05D006673 1.3e-130 472.2 1401 32.1
PGSC0003DMG400011483 Solanum tuberosum HOM05D000283 ORTHO05D006673 7.2e-129 466.5 1416 31.7
Migut.F00680 Erythranthe guttata HOM05D000283 ORTHO05D006673 6.5e-122 443.4 1190 34.2
GSVIVG01032629001 Vitis vinifera HOM05D000283 ORTHO05D006673 8.5e-122 443.0 572 48.3
ClCG09G020330 Citrullus lanatus HOM05D000283 ORTHO05D006673 5.6e-105 387.1 1330 30.3
PGSC0003DMG400011491 Solanum tuberosum HOM05D000283 ORTHO05D006673 3.6e-104 384.4 1112 32.5
Solyc04g010185.1 Solanum lycopersicum HOM05D000283 ORTHO05D006673 4.7e-104 384.0 932 34.4
Cpa.g.sc1.302 Carica papaya HOM05D000283 ORTHO05D006673 3.1e-103 381.3 291 64.3
PSO782G0271 Papaver somniferum HOM05D000283 ORTHO05D006673 7.0e-100 370.2 1312 30.6
PSO478G2008 Papaver somniferum HOM05D000283 ORTHO05D006673 2.3e-98 365.2 1257 31.2
Cpa.g.sc1.301 Carica papaya HOM05D000283 ORTHO05D006673 1.9e-97 362.1 951 33.9
THA.LOC104799366 Tarenaya hassleriana HOM05D000283 ORTHO05D006673 6.0e-91 340.5 1465 29.1
Sed0006338 Sechium edule HOM05D000283 ORTHO05D006673 7.8e-91 340.1 677 37.4
Oeu025162.3 Olea europaea HOM05D000283 ORTHO05D006673 3.9e-90 337.8 1225 28.6
Sed0026677 Sechium edule HOM05D000283 ORTHO05D006673 4.3e-89 334.3 1325 29.0
MELO3C025491.2 Cucumis melo HOM05D000283 ORTHO05D006673 1.2e-86 326.2 770 34.3
MELO3C025488.2 Cucumis melo HOM05D000283 ORTHO05D006673 2.6e-86 325.1 728 35.6
DCAR_010662 Daucus carota HOM05D000283 ORTHO05D006673 9.2e-84 316.6 1435 28.4
CsaV3_5G026060 Cucumis sativus L. HOM05D000283 ORTHO05D006673 3.3e-81 308.1 1343 28.1
MELO3C025492.2 Cucumis melo HOM05D000283 ORTHO05D006673 1.3e-69 269.6 730 31.5
THA.LOC104809887 Tarenaya hassleriana HOM05D000283 ORTHO05D006673 1.9e-68 265.8 1233 28.6
Sopen04g005270 Solanum pennellii HOM05D000283 ORTHO05D006673 2.1e-67 262.3 1147 28.7
DCAR_020267 Daucus carota HOM05D000457 ORTHO05D000560 1.1e-63 250.0 1150 27.9
CsaV3_5G026100 Cucumis sativus L. HOM05D000283 ORTHO05D006673 3.4e-62 245.0 401 40.4
AL6G24200 Arabidopsis lyrata HOM05D010678 ORTHO05D006673 1.6e-56 226.1 1330 26.7
Actinidia29198 Actinidia chinensis HOM05D000283 ORTHO05D006673 2.8e-56 225.3 694 33.9
Sp6g30440 Schrenkiella parvula HOM05D010678 ORTHO05D006673 2.6e-54 218.8 1270 26.9
CDE07G1705 Ceratophyllum demersum HOM05D000283 ORTHO05D006673 1.9e-52 212.6 1428 25.7
AT5G13590 Arabidopsis thaliana HOM05D010678 ORTHO05D006673 2.7e-51 208.8 1289 26.9
Carub.0006s1175 Capsella rubella HOM05D010678 ORTHO05D006673 1.5e-49 203.0 1258 26.1
Thhalv10012490m.g Eutrema salsugineum HOM05D010678 ORTHO05D006673 1.5e-49 203.0 1288 26.1
SGA_v2.0_scaffold60G20995 Striga asiatica HOM05D000283 ORTHO05D006673 5.7e-49 201.1 1378 26.0
PGSC0003DMG400011472 Solanum tuberosum HOM05D000283 ORTHO05D006673 1.6e-48 199.5 312 39.4
ATR0681G260 Amborella trichopoda HOM05D000283 ORTHO05D006673 2.6e-46 192.2 1244 27.3
CDE04G2023 Ceratophyllum demersum HOM05D000283 ORTHO05D006673 1.8e-39 169.5 1409 24.6
CARHR199850 Cardamine hirsuta HOM05D010678 ORTHO05D006673 2.6e-38 165.6 1383 24.5
Solyc04g010155.2 Solanum lycopersicum HOM05D000283 ORTHO05D006673 1.0e-37 163.7 340 40.3
TAR629G2332 Trochodendron aralioides HOM05D006627 ORTHO05D007753 1.0e-37 163.7 1511 24.8
MBI04_g35056_MAGBIO Magnolia biondii HOM05D006627 ORTHO05D007753 9.4e-36 157.1 773 29.5
Sopen04g005310 Solanum pennellii HOM05D000283 ORTHO05D006673 2.7e-35 155.6 400 35.8
PGSC0003DMG400011487 Solanum tuberosum HOM05D000283 ORTHO05D006673 3.6e-35 155.2 1150 24.1
Sopen04g005330 Solanum pennellii HOM05D000283 ORTHO05D006673 1.1e-33 150.2 366 35.8
BolC2t06571H Brassica oleracea HOM05D010678 ORTHO05D006673 2.6e-30 139.0 570 29.6
C02p06270 Brassica napus HOM05D010678 ORTHO05D006673 7.7e-30 137.5 684 27.2
BcaNung01143 Brassica carinata HOM05D010678 ORTHO05D006673 1.0e-29 137.1 476 30.5
BraA02t05176Z Brassica rapa HOM05D010678 ORTHO05D006673 6.5e-29 134.4 586 28.8
Nn1g01607 Nelumbo nucifera HOM05D006627 ORTHO05D007753 3.6e-27 128.6 798 27.9
A02p02040 Brassica napus HOM05D010678 ORTHO05D006673 1.0e-26 127.1 645 27.0
BcaNung01899 Brassica carinata HOM05D010678 ORTHO05D006673 9.7e-25 120.6 535 28.8
TAR375G0196 Trochodendron aralioides HOM05D006627 ORTHO05D007753 3.7e-24 118.6 915 27.7
BolC9t59195H Brassica oleracea HOM05D010678 ORTHO05D006673 4.8e-24 118.2 1253 25.5
PGSC0003DMG400011471 Solanum tuberosum HOM05D000283 ORTHO05D006673 9.1e-23 114.0 452 28.3
PSO478G1013 Papaver somniferum HOM05D006627 ORTHO05D007753 1.3e-21 110.2 747 27.6
A10p24680 Brassica napus HOM05D010678 ORTHO05D006673 2.2e-21 109.4 1296 24.5
Nn1g01606 Nelumbo nucifera HOM05D006627 ORTHO05D007753 6.5e-21 107.8 873 26.7
Sopen03g020140 Solanum pennellii HOM05D000002 ORTHO05D000001 1.5e-20 106.7 331 30.5
PGSC0003DMG400042471 Solanum tuberosum HOM05D000283 ORTHO05D006673 1.9e-20 106.3 232 38.8
BcaC04g19099 Brassica carinata HOM05D010678 ORTHO05D006673 2.5e-20 105.9 496 30.0
C09p63510 Brassica napus HOM05D010678 ORTHO05D006673 2.5e-20 105.9 501 30.1
PSO782G1175 Papaver somniferum HOM05D006627 ORTHO05D007753 6.1e-19 101.3 749 27.8
PGSC0003DMG400011503 Solanum tuberosum HOM05D000283 ORTHO05D006673 1.8e-18 99.8 192 39.1
TAR374G1318 Trochodendron aralioides HOM05D006627 ORTHO05D007753 8.8e-18 97.4 1146 24.4
PGSC0003DMG400011488 Solanum tuberosum HOM05D000283 ORTHO05D006673 2.0e-17 96.3 632 26.1
CAN.G786.35 Capsicum annuum HOM05D000283 ORTHO05D006673 2.4e-15 89.4 145 35.9
SGA_v2.0_scaffold44G16697 Striga asiatica HOM05D000283 ORTHO05D006673 3.1e-15 89.0 281 33.8
Oeu025164.1 Olea europaea HOM05D000283 ORTHO05D010811 4.5e-14 85.1 300 27.3
CsaV3_5G026070 Cucumis sativus L. HOM05D000283 ORTHO05D006673 5.9e-14 84.7 370 27.8
Dinv38916 Davidia involucrata HOM05D006627 ORTHO05D007753 1.0e-13 84.0 1129 23.6
BraA10t44531Z Brassica rapa HOM05D010678 ORTHO05D006673 5.0e-13 81.6 457 27.8
Hund11448 Selenicereus undatus HOM05D006627 ORTHO05D007753 4.2e-12 78.6 1132 21.4
GSVIVG01019397001 Vitis vinifera HOM05D006627 ORTHO05D007753 5.5e-12 78.2 694 24.9
Psat3g141160 Pisum sativum HOM05D000846 ORTHO05D001340 9.4e-12 77.4 142 35.2
PGSC0003DMG400039757 Solanum tuberosum HOM05D000283 ORTHO05D006673 1.2e-11 77.0 165 32.1
Solyc04g010130.1 Solanum lycopersicum HOM05D000283 ORTHO05D006673 3.6e-11 75.5 89 40.4
Psat3g141280 Pisum sativum HOM05D000846 ORTHO05D001340 1.0e-10 73.9 137 34.3
AUR62010719 Chenopodium quinoa HOM05D006627 ORTHO05D007753 3.4e-09 68.9 269 34.9
Oeu025165.1 Olea europaea HOM05D008194 ORTHO05D010811 7.5e-09 67.8 141 34.0
AUR62027266 Chenopodium quinoa HOM05D006627 ORTHO05D007753 2.8e-08 65.9 274 34.3
AUR62027265 Chenopodium quinoa HOM05D006627 ORTHO05D007753 1.8e-07 63.2 267 34.1
Sopen04g005280 Solanum pennellii HOM05D000283 ORTHO05D006673 5.4e-07 61.6 90 42.2
COL.COLO4_31476 Corchorus olitorius HOM05D000283 ORTHO05D006673 7.0e-07 61.2 46 67.4
Sopen04g005300 Solanum pennellii HOM05D000283 ORTHO05D006673 1.2e-06 60.5 122 32.8
EL10Ac5g12810 Beta vulgaris HOM05D006627 ORTHO05D007753 1.6e-06 60.1 469 27.7
Os08g0430000 Oryza sativa ssp. japonica HOM05D006627 ORTHO05D007753 3.5e-06 58.9 392 26.5
Haze_00034 Corylus avellana HOM05D006627 ORTHO05D007753 5.9e-06 58.2 330 27.9


User provided reference genes

Program Settings