Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.01G275500 Carya illinoinensis HOM05D005690 ORTHO05D007075 1.5e-109 399.4 194 100.0
CiPaw.02G175700 Carya illinoinensis HOM05D005690 ORTHO05D007075 8.8e-65 250.8 204 67.6
Cfa001602 Carpinus fangiana HOM05D005690 ORTHO05D007075 1.7e-63 246.5 204 66.2
GSVIVG01016316001 Vitis vinifera HOM05D005690 ORTHO05D007075 5.4e-62 241.5 205 62.4
Haze_16926 Corylus avellana HOM05D005690 ORTHO05D007075 9.1e-62 240.7 204 65.2
Glyma.17G183500 Glycine max HOM05D005690 ORTHO05D007075 3.5e-61 238.8 202 63.9
Dinv11797 Davidia involucrata HOM05D005690 ORTHO05D007075 7.7e-61 237.7 203 64.0
Manes.07G103000 Manihot esculenta HOM05D005690 ORTHO05D007075 2.2e-60 236.1 205 62.4
Gorai.010G204700 Gossypium raimondii HOM05D005690 ORTHO05D007075 3.8e-60 235.3 202 63.4
Thecc.10G069500 Theobroma cacao HOM05D005690 ORTHO05D007075 5.0e-60 235.0 202 62.9
COL.COLO4_32034 Corchorus olitorius HOM05D005690 ORTHO05D007075 8.5e-60 234.2 187 66.8
FAN10G0816 Fragaria x ananassa HOM05D005690 ORTHO05D007075 8.5e-60 234.2 204 61.8
Gohir.A06G178200 Gossypium hirsutum HOM05D005690 ORTHO05D007075 1.9e-59 233.0 202 62.9
Gohir.D06G176800 Gossypium hirsutum HOM05D005690 ORTHO05D007075 2.5e-59 232.6 201 63.2
Prupe.2G217200 Prunus persica HOM05D005690 ORTHO05D007075 2.5e-59 232.6 188 65.4
FAN01G0973 Fragaria x ananassa HOM05D005690 ORTHO05D007075 3.2e-59 232.3 204 61.3
TAR636G2049 Trochodendron aralioides HOM05D005690 ORTHO05D007075 3.2e-59 232.3 208 61.5
Sabra08G0029500 Salix brachista HOM05D005690 ORTHO05D007075 4.2e-59 231.9 202 63.4
Potri.008G042800 Populus trichocarpa HOM05D005690 ORTHO05D007075 5.5e-59 231.5 206 63.1
TAR633G2147 Trochodendron aralioides HOM05D005690 ORTHO05D007075 5.5e-59 231.5 201 61.7
MD07G1177900 Malus domestica HOM05D005690 ORTHO05D007075 7.2e-59 231.1 188 63.8
FvH4_7g20020 Fragaria vesca HOM05D005690 ORTHO05D007075 9.4e-59 230.7 204 61.3
FAN03G1698 Fragaria x ananassa HOM05D005690 ORTHO05D007075 9.4e-59 230.7 204 61.3
FAN06G0212 Fragaria x ananassa HOM05D005690 ORTHO05D007075 9.4e-59 230.7 204 61.3
RcHm_v2.0_Chr1g0363981 Rosa chinensis HOM05D005690 ORTHO05D007075 9.4e-59 230.7 204 61.3
Lalb_Chr19g0129571 Lupinus albus HOM05D005690 ORTHO05D007075 1.2e-58 230.3 204 61.8
Potri.010G219000 Populus trichocarpa HOM05D005690 ORTHO05D007075 1.6e-58 229.9 202 62.9
Potri.010G219400 Populus trichocarpa HOM05D005690 ORTHO05D007075 1.6e-58 229.9 202 62.9
MD01G1111700 Malus domestica HOM05D005690 ORTHO05D007075 2.1e-58 229.6 188 63.8
Duzib114G0556 Durio zibethinus HOM05D005690 ORTHO05D007075 3.6e-58 228.8 202 62.4
Nn2g13015 Nelumbo nucifera HOM05D005690 ORTHO05D007075 2.3e-57 226.1 193 62.7
CANSAT56G3535 Cannabis sativa HOM05D005690 ORTHO05D007075 4.0e-57 225.3 208 59.6
Atru.chr12.697 Acer truncatum HOM05D005690 ORTHO05D007075 8.8e-57 224.2 189 62.4
QL08p056659 Quercus lobata HOM05D005690 ORTHO05D007075 8.8e-57 224.2 203 61.6
Sabra10G0169300 Salix brachista HOM05D005690 ORTHO05D007075 8.8e-57 224.2 202 60.9
VMungo0464G0948 Vigna mungo HOM05D005690 ORTHO05D007075 8.8e-57 224.2 200 61.5
MSTRG.373 Avicennia marina HOM05D005690 ORTHO05D007075 1.5e-56 223.4 189 63.5
arahy.Tifrunner.gnm1.ann1.08HL34 Arachis hypogaea HOM05D005690 ORTHO05D007075 2.6e-56 222.6 191 61.3
arahy.Tifrunner.gnm1.ann1.8E9GH8 Arachis hypogaea HOM05D005690 ORTHO05D007075 2.6e-56 222.6 191 61.3
Phvul.004G075000 Phaseolus vulgaris HOM05D005690 ORTHO05D007075 2.6e-56 222.6 201 60.2
Nitab4.5_0009003g0010 Nicotiana tabacum HOM05D005690 ORTHO05D007075 3.4e-56 222.2 189 61.9
Ca_04676_v3 Cicer arietinum L. HOM05D005690 ORTHO05D007075 4.4e-56 221.9 189 63.0
Cc02_g11390 Coffea canephora HOM05D005690 ORTHO05D007075 9.8e-56 220.7 188 63.3
Lj2g0014971 Lotus japonicus HOM05D005690 ORTHO05D007075 9.8e-56 220.7 189 62.4
Cpa.g.sc53.43 Carica papaya HOM05D005690 ORTHO05D007075 1.3e-55 220.3 189 64.0
Nitab4.5_0000476g0050 Nicotiana tabacum HOM05D005690 ORTHO05D007075 1.7e-55 219.9 189 61.9
CsaV3_5G025890 Cucumis sativus L. HOM05D005690 ORTHO05D007075 2.2e-55 219.5 186 62.9
Nitab4.5_0012288g0020 Nicotiana tabacum HOM05D005690 ORTHO05D007075 2.8e-55 219.2 189 59.3
Atru.chr12.670 Acer truncatum HOM05D005690 ORTHO05D007075 3.7e-55 218.8 189 61.4
Ciclev10032614m.g Citrus clementina HOM05D005690 ORTHO05D007075 3.7e-55 218.8 201 60.7
Eucgr.J01111 Eucalyptus grandis HOM05D005690 ORTHO05D007075 3.7e-55 218.8 205 57.1
Peaxi162Scf00108g00166 Petunia axillaris HOM05D005690 ORTHO05D007075 3.7e-55 218.8 189 59.8
Nitab4.5_0000233g0230 Nicotiana tabacum HOM05D005690 ORTHO05D007075 8.3e-55 217.6 189 59.3
MBI05_g11579_MAGBIO Magnolia biondii HOM05D005690 ORTHO05D007075 1.1e-54 217.2 189 61.9
MELO3C002879.2 Cucumis melo HOM05D005690 ORTHO05D007075 4.1e-54 215.3 186 62.4
Peaxi162Scf01175g00023 Petunia axillaris HOM05D005690 ORTHO05D007075 4.1e-54 215.3 189 60.3
vmacro04884 Vaccinium macrocarpon HOM05D005690 ORTHO05D007075 7.0e-54 214.5 187 60.4
ECA232G2854 Erigeron canadensis HOM05D005690 ORTHO05D007075 1.2e-53 213.8 188 59.6
Medtr6g033405 Medicago truncatula HOM05D005690 ORTHO05D007075 1.6e-53 213.4 189 61.4
Rhsim09G0153300 Rhododendron simsii HOM05D005690 ORTHO05D007075 1.6e-53 213.4 187 59.9
CAN.G694.84 Capsicum annuum HOM05D005690 ORTHO05D007075 2.7e-53 212.6 189 59.8
Sed0011214 Sechium edule HOM05D005690 ORTHO05D007075 2.7e-53 212.6 184 60.3
THA.LOC104802837 Tarenaya hassleriana HOM05D005690 ORTHO05D007075 2.7e-53 212.6 189 60.8
Sed0019941 Sechium edule HOM05D005690 ORTHO05D007075 3.5e-53 212.2 186 61.3
Solyc05g056090.3 Solanum lycopersicum HOM05D005690 ORTHO05D007075 1.0e-52 210.7 189 59.3
Sopen05g034500 Solanum pennellii HOM05D005690 ORTHO05D007075 1.0e-52 210.7 189 59.3
TWI38G1302 Tripterygium wilfordii HOM05D005690 ORTHO05D007075 1.0e-52 210.7 203 56.2
Hma1.2p1_0453F.1_g156020 Hydrangea macrophylla HOM05D005690 ORTHO05D007075 2.9e-52 209.1 191 59.2
Hma1.2p1_2080F.1_g313490 Hydrangea macrophylla HOM05D005690 ORTHO05D007075 2.9e-52 209.1 191 59.2
PGSC0003DMG400023460 Solanum tuberosum HOM05D005690 ORTHO05D007075 2.9e-52 209.1 189 58.2
PGR044G2452 Punica granatum HOM05D005690 ORTHO05D007075 1.5e-51 206.8 200 55.0
unitig_0.g529 Utricularia gibba HOM05D005690 ORTHO05D007075 1.5e-51 206.8 189 56.6
HanXRQChr09g0246501 Helianthus annuus HOM05D005690 ORTHO05D007075 2.5e-51 206.1 186 57.5
Lsat_1_v5_gn_9_67140 Lactuca sativa HOM05D005690 ORTHO05D007075 2.5e-51 206.1 186 57.0
TPR.G36634 Trifolium pratense HOM05D005690 ORTHO05D007075 2.5e-51 206.1 190 60.0
HPP92_003607 Vanilla planifolia HOM05D005690 ORTHO05D007075 2.5e-51 206.1 190 60.0
Rhsim03G0123000 Rhododendron simsii HOM05D005690 ORTHO05D007075 3.3e-51 205.7 207 55.6
ATR1159G074 Amborella trichopoda HOM05D005690 ORTHO05D007075 7.3e-51 204.5 192 59.4
HanXRQChr17g0563371 Helianthus annuus HOM05D005690 ORTHO05D007075 1.2e-50 203.8 185 57.3
ClCG09G020510 Citrullus lanatus HOM05D005690 ORTHO05D007075 1.4e-49 200.3 180 60.6
Hund19342 Selenicereus undatus HOM05D005690 ORTHO05D007075 3.0e-49 199.1 186 57.5
AUR62027946 Chenopodium quinoa HOM05D005690 ORTHO05D007075 1.5e-48 196.8 208 53.4
SGA_v2.0_scaffold28G12052 Striga asiatica HOM05D005690 ORTHO05D007075 1.5e-48 196.8 186 59.1
SalBow4G1295 Salvia bowleyana HOM05D005690 ORTHO05D007075 2.0e-48 196.4 187 56.1
CDE04G0636 Ceratophyllum demersum HOM05D005690 ORTHO05D007075 5.7e-48 194.9 199 52.8
Eucgr.J01110 Eucalyptus grandis HOM05D005690 ORTHO05D007075 9.8e-48 194.1 189 52.9
Migut.F01989 Erythranthe guttata HOM05D005690 ORTHO05D007075 1.7e-47 193.4 190 55.3
Aa31LG9G7550 Aethionema arabicum HOM05D005690 ORTHO05D007075 6.4e-47 191.4 199 50.8
AUR62020766 Chenopodium quinoa HOM05D005690 ORTHO05D007075 8.3e-47 191.0 186 54.8
PSO339G2382 Papaver somniferum HOM05D005690 ORTHO05D007075 8.3e-47 191.0 203 52.7
PSO384G2564 Papaver somniferum HOM05D005690 ORTHO05D007075 1.4e-46 190.3 203 53.2
EL10Ac2g03578 Beta vulgaris HOM05D005690 ORTHO05D007075 9.2e-46 187.6 188 54.3
Ah.16g108410 Amaranthus hybridus HOM05D005690 ORTHO05D007075 1.2e-45 187.2 197 51.8
CDE07G1130 Ceratophyllum demersum HOM05D005690 ORTHO05D007075 1.7e-44 183.3 201 49.3
Zm00001eb064810 Zea mays HOM05D005690 ORTHO05D007075 1.7e-44 183.3 191 54.5
Carub.0004s1755 Capsella rubella HOM05D005690 ORTHO05D007075 6.6e-44 181.4 201 50.7
Aqoxy6G02013 Aquilegia oxysepala HOM05D005690 ORTHO05D007075 8.6e-44 181.0 194 52.1
Os03g0853800 Oryza sativa ssp. japonica HOM05D005690 ORTHO05D007075 8.6e-44 181.0 124 71.8
Peaxi162Scf00108g00173 Petunia axillaris HOM05D005690 ORTHO05D007075 1.1e-43 180.6 121 71.9
BolC4t27955H Brassica oleracea HOM05D005690 ORTHO05D007075 5.6e-43 178.3 188 53.7
CARHR130040 Cardamine hirsuta HOM05D005690 ORTHO05D007075 7.3e-43 177.9 189 54.0
SalBow3G1299 Salvia bowleyana HOM05D005690 ORTHO05D007075 7.3e-43 177.9 187 51.9
AL4G31900 Arabidopsis lyrata HOM05D005690 ORTHO05D007075 9.5e-43 177.6 201 49.8
AT2G35790 Arabidopsis thaliana HOM05D005690 ORTHO05D007075 9.5e-43 177.6 204 49.5
BcaB06g28872 Brassica carinata HOM05D005690 ORTHO05D007075 1.2e-42 177.2 192 53.1
C04p64770 Brassica napus HOM05D005690 ORTHO05D007075 1.2e-42 177.2 181 54.1
BcaB01g03881 Brassica carinata HOM05D005690 ORTHO05D007075 3.6e-42 175.6 122 68.9
BcaC01g05707 Brassica carinata HOM05D005690 ORTHO05D007075 3.6e-42 175.6 122 68.9
C03p22980 Brassica napus HOM05D005690 ORTHO05D007075 3.6e-42 175.6 122 68.9
Sp4g18050 Schrenkiella parvula HOM05D005690 ORTHO05D007075 3.6e-42 175.6 122 68.9
A03p19730 Brassica napus HOM05D005690 ORTHO05D007075 4.7e-42 175.3 122 68.0
A04p27260 Brassica napus HOM05D005690 ORTHO05D007075 4.7e-42 175.3 189 51.3
BcaC02g07668 Brassica carinata HOM05D005690 ORTHO05D007075 1.4e-41 173.7 188 52.7
Lj8C97T4 Lonicera japonica HOM05D005690 ORTHO05D007075 1.4e-41 173.7 117 71.8
BraA04t18224Z Brassica rapa HOM05D005690 ORTHO05D007075 1.8e-41 173.3 122 68.0
Sc06g0001780 Simmondsia chinensis HOM05D005690 ORTHO05D007075 3.1e-41 172.6 117 71.8
Thhalv10017166m.g Eutrema salsugineum HOM05D005690 ORTHO05D007075 1.5e-40 170.2 122 66.4
SEGI_15078 Sequoiadendron giganteum HOM05D005690 ORTHO05D007075 4.4e-40 168.7 124 64.5
CSS0000246 Camellia sinensis var. sinensis HOM05D005690 ORTHO05D007075 3.5e-37 159.1 145 62.1
Psat1g099440 Pisum sativum HOM05D005690 ORTHO05D007075 5.6e-35 151.8 154 53.2
BcaB01g03882 Brassica carinata HOM05D005690 ORTHO05D007075 7.3e-35 151.4 108 66.7
Nitab4.5_0003072g0050 Nicotiana tabacum HOM05D005690 ORTHO05D007075 1.2e-34 150.6 194 45.4
AagrBONN_evm.TU.Sc2ySwM_362.1612 Anthoceros agrestis HOM05D005690 ORTHO05D007075 8.1e-26 121.3 122 49.2
Mapoly0033s0041 Marchantia polymorpha HOM05D005690 ORTHO05D007075 2.3e-25 119.8 195 35.4
Mapoly0033s0042 Marchantia polymorpha HOM05D005690 ORTHO05D007075 3.4e-24 115.9 118 46.6
Pp3c10_15170 Physcomitrium patens HOM05D005690 ORTHO05D007075 3.4e-24 115.9 124 44.4
Psat2g052960 Pisum sativum HOM05D004553 ORTHO05D005426 4.4e-24 115.5 155 43.2
Lalb_Chr01g0010161 Lupinus albus HOM05D005690 ORTHO05D007075 2.8e-18 96.3 65 70.8
SMO239G0063 Selaginella moellendorffii HOM05D005690 ORTHO05D007075 5.2e-17 92.0 124 35.5
Cre12.g540051 Chlamydomonas reinhardtii HOM05D005690 ORTHO05D007075 2.1e-10 70.1 113 33.6
CDE07G0610 Ceratophyllum demersum HOM05D005690 ORTHO05D007075 3.4e-08 62.8 120 34.2


User provided reference genes

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