Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.01G270900 Carya illinoinensis HOM05D004577 ORTHO05D005062 2.9e-71 271.9 154 100.0
Cfa001670 Carpinus fangiana HOM05D004577 ORTHO05D005062 1.3e-34 150.2 156 62.8
Haze_16864 Corylus avellana HOM05D004577 ORTHO05D005062 1.1e-33 147.1 156 62.2
QL08p055193 Quercus lobata HOM05D004577 ORTHO05D005062 7.3e-30 134.4 153 55.6
CiPaw.11G206900 Carya illinoinensis HOM05D004577 ORTHO05D005062 9.3e-17 90.9 151 53.0
Cfa021890 Carpinus fangiana HOM05D004577 ORTHO05D005062 2.7e-16 89.4 137 55.5
Haze_09864 Corylus avellana HOM05D004577 ORTHO05D005062 7.9e-16 87.8 137 54.0
CiPaw.12G140600 Carya illinoinensis HOM05D004577 ORTHO05D005062 5.1e-15 85.1 148 50.0
MD03G1035300 Malus domestica HOM05D004577 ORTHO05D005062 3.3e-14 82.4 107 58.9
MD11G1037000 Malus domestica HOM05D004577 ORTHO05D005062 7.3e-14 81.3 107 59.8
unitig_8.g4693 Utricularia gibba HOM05D002703 ORTHO05D002921 1.6e-13 80.1 128 53.9
unitig_578.g16418 Utricularia gibba HOM05D004577 ORTHO05D005062 2.1e-13 79.7 129 55.0
CANSAT11G1943 Cannabis sativa HOM05D004577 ORTHO05D005062 2.8e-13 79.3 157 47.8
QL08p002692 Quercus lobata HOM05D004577 ORTHO05D005062 3.6e-13 79.0 107 61.7
Ca_12454_v3 Cicer arietinum L. HOM05D004577 ORTHO05D005062 2.4e-12 76.3 106 54.7
ClCG10G003880 Citrullus lanatus HOM05D004577 ORTHO05D005062 2.4e-12 76.3 101 59.4
ClCG10G004020 Citrullus lanatus HOM05D004577 ORTHO05D005062 2.4e-12 76.3 101 59.4
ClCG10G004040 Citrullus lanatus HOM05D004577 ORTHO05D005062 2.4e-12 76.3 101 59.4
MELO3C014068.2 Cucumis melo HOM05D004577 ORTHO05D005062 2.4e-12 76.3 101 60.4
Sed0027009 Sechium edule HOM05D004577 ORTHO05D005062 2.4e-12 76.3 101 60.4
Lalb_Chr16g0391221 Lupinus albus HOM05D004577 ORTHO05D005062 3.1e-12 75.9 100 60.0
RcHm_v2.0_Chr5g0075591 Rosa chinensis HOM05D004577 ORTHO05D005062 3.1e-12 75.9 110 55.5
MBI15_g38535_MAGBIO Magnolia biondii HOM05D004577 ORTHO05D005062 4.0e-12 75.5 104 61.5
FAN25G2651 Fragaria x ananassa HOM05D004577 ORTHO05D005062 5.3e-12 75.1 100 59.0
CSS0013049 Camellia sinensis var. sinensis HOM05D004577 ORTHO05D005062 6.9e-12 74.7 123 55.3
FAN21G3744 Fragaria x ananassa HOM05D004577 ORTHO05D005062 6.9e-12 74.7 110 55.5
Glyma.18G074400 Glycine max HOM05D004577 ORTHO05D005062 6.9e-12 74.7 109 56.0
PGR004G1013 Punica granatum HOM05D004577 ORTHO05D005062 6.9e-12 74.7 147 49.7
Phvul.006G059254 Phaseolus vulgaris HOM05D004577 ORTHO05D005062 9.0e-12 74.3 93 63.4
Dinv40884 Davidia involucrata HOM05D002691 ORTHO05D003304 2.0e-11 73.2 128 50.8
Prupe.6G028300 Prunus persica HOM05D004577 ORTHO05D005062 2.0e-11 73.2 109 56.0
DCAR_019165 Daucus carota HOM05D004577 ORTHO05D005062 2.6e-11 72.8 95 62.1
FvH4_3g42270 Fragaria vesca HOM05D004577 ORTHO05D005062 2.6e-11 72.8 100 58.0
Medtr3g461020 Medicago truncatula HOM05D004577 ORTHO05D005062 2.6e-11 72.8 92 60.9
FAN16G3679 Fragaria x ananassa HOM05D004577 ORTHO05D005062 3.4e-11 72.4 100 58.0
VMungo0540G1151 Vigna mungo HOM05D004577 ORTHO05D005062 3.4e-11 72.4 93 61.3
C03p76790 Brassica napus HOM05D004577 ORTHO05D005062 4.5e-11 72.0 95 54.7
Nn1g08321 Nelumbo nucifera HOM05D004577 ORTHO05D005062 4.5e-11 72.0 113 57.5
Psat5g166440 Pisum sativum HOM05D004577 ORTHO05D005062 4.5e-11 72.0 101 56.4
CsaV3_3G003860 Cucumis sativus L. HOM05D004577 ORTHO05D005062 5.8e-11 71.6 101 56.4
Glyma.08G332600 Glycine max HOM05D004577 ORTHO05D005062 5.8e-11 71.6 120 51.7
Manes.01G021500 Manihot esculenta HOM05D004577 ORTHO05D005062 5.8e-11 71.6 137 46.0
MSTRG.13031 Avicennia marina HOM05D004577 ORTHO05D005062 7.6e-11 71.2 103 59.2
FAN11G1489 Fragaria x ananassa HOM05D004577 ORTHO05D005062 1.3e-10 70.5 97 58.8
Oeu021394.1 Olea europaea HOM05D004577 ORTHO05D005062 1.3e-10 70.5 114 54.4
MSTRG.14503 Avicennia marina HOM05D004577 ORTHO05D005062 1.7e-10 70.1 100 60.0
A08p24420 Brassica napus HOM05D004577 ORTHO05D005062 2.2e-10 69.7 139 43.9
BraA08t34397Z Brassica rapa HOM05D004577 ORTHO05D005062 2.2e-10 69.7 139 43.9
TWI38G1007 Tripterygium wilfordii HOM05D004577 ORTHO05D005062 2.9e-10 69.3 134 47.0
BolC3t19933H Brassica oleracea HOM05D004577 ORTHO05D005062 3.8e-10 68.9 139 43.9
Carub.0001s2869 Capsella rubella HOM05D004577 ORTHO05D005062 3.8e-10 68.9 142 45.8
TAR627G0729 Trochodendron aralioides HOM05D004577 ORTHO05D005062 3.8e-10 68.9 138 51.4
Migut.M01633 Erythranthe guttata HOM05D004577 ORTHO05D005062 4.9e-10 68.6 116 54.3
Eucgr.K00372 Eucalyptus grandis HOM05D004577 ORTHO05D005062 6.4e-10 68.2 95 61.1
Sp1g26310 Schrenkiella parvula HOM05D004577 ORTHO05D005062 6.4e-10 68.2 95 53.7
TPR.G17935 Trifolium pratense HOM05D004577 ORTHO05D005062 6.4e-10 68.2 92 53.3
CSS0030856 Camellia sinensis var. sinensis HOM05D004577 ORTHO05D005062 8.4e-10 67.8 116 54.3
AT1G56200 Arabidopsis thaliana HOM05D004577 ORTHO05D005062 1.1e-09 67.4 95 57.9
BcaNung05263 Brassica carinata HOM05D004577 ORTHO05D005062 1.1e-09 67.4 102 52.0
Carub.0001s4488 Capsella rubella HOM05D004577 ORTHO05D005062 1.1e-09 67.4 95 57.9
DCAR_015198 Daucus carota HOM05D004577 ORTHO05D005062 1.1e-09 67.4 98 57.1
arahy.Tifrunner.gnm1.ann1.DGYJ7N Arachis hypogaea HOM05D004577 ORTHO05D005062 1.4e-09 67.0 93 59.1
arahy.Tifrunner.gnm1.ann1.JWFX0I Arachis hypogaea HOM05D004577 ORTHO05D005062 1.4e-09 67.0 93 59.1
CSS0048553 Camellia sinensis var. sinensis HOM05D004577 ORTHO05D005062 1.4e-09 67.0 109 57.8
CARHR045970 Cardamine hirsuta HOM05D004577 ORTHO05D005062 1.4e-09 67.0 95 57.9
MBI07_g28243_MAGBIO Magnolia biondii HOM05D004577 ORTHO05D005062 1.4e-09 67.0 99 49.5
PSO541G2111 Papaver somniferum HOM05D004577 ORTHO05D005062 1.4e-09 67.0 145 45.5
Lsat_1_v5_gn_9_89100 Lactuca sativa HOM05D004577 ORTHO05D005062 1.9e-09 66.6 110 55.5
AL1G64510 Arabidopsis lyrata HOM05D004577 ORTHO05D005062 2.4e-09 66.2 131 47.3
Cc10_g02580 Coffea canephora HOM05D004577 ORTHO05D005062 2.4e-09 66.2 128 50.0
TAR629G1725 Trochodendron aralioides HOM05D004577 ORTHO05D005062 2.4e-09 66.2 115 55.7
arahy.Tifrunner.gnm1.ann1.8LZ2EL Arachis hypogaea HOM05D011393 ORTHO05D013493 3.2e-09 65.9 113 47.8
BcaC01g00196 Brassica carinata HOM05D004577 ORTHO05D005062 4.2e-09 65.5 139 43.2
A07p09910 Brassica napus HOM05D004577 ORTHO05D005062 4.2e-09 65.5 92 54.3
BcaB03g13825 Brassica carinata HOM05D004577 ORTHO05D005062 5.5e-09 65.1 146 43.8
C07p15110 Brassica napus HOM05D004577 ORTHO05D005062 5.5e-09 65.1 128 44.5
BolC7t42015H Brassica oleracea HOM05D004577 ORTHO05D005062 5.5e-09 65.1 128 44.5
Eucgr.E00269 Eucalyptus grandis HOM05D004577 ORTHO05D005062 7.1e-09 64.7 152 42.8
CARHR029880 Cardamine hirsuta HOM05D004577 ORTHO05D005062 9.3e-09 64.3 89 58.4
PSO675G7851 Papaver somniferum HOM05D004577 ORTHO05D005062 9.3e-09 64.3 145 45.5
C04p16620 Brassica napus HOM05D004577 ORTHO05D005062 1.6e-08 63.5 96 56.2
GSVIVG01014742001 Vitis vinifera HOM05D004577 ORTHO05D005062 1.6e-08 63.5 65 56.9
arahy.Tifrunner.gnm1.ann1.GG3KEQ Arachis hypogaea HOM05D011393 ORTHO05D013493 2.1e-08 63.2 106 48.1
A05p12690 Brassica napus HOM05D004577 ORTHO05D005062 2.1e-08 63.2 95 56.8
BolC4t23212H Brassica oleracea HOM05D004577 ORTHO05D005062 2.1e-08 63.2 95 56.8
SGA_v2.0_scaffold8G04425 Striga asiatica HOM05D004577 ORTHO05D005062 2.1e-08 63.2 110 51.8
ATR0681G062 Amborella trichopoda HOM05D004577 ORTHO05D005062 2.7e-08 62.8 93 53.8
BraA07t28780Z Brassica rapa HOM05D004577 ORTHO05D005062 2.7e-08 62.8 105 50.5
Ciclev10009709m.g Citrus clementina HOM05D004577 ORTHO05D005062 2.7e-08 62.8 152 39.5
Sopen08g002020 Solanum pennellii HOM05D004577 ORTHO05D005062 2.7e-08 62.8 118 49.2
BraA05t20207Z Brassica rapa HOM05D004577 ORTHO05D005062 3.5e-08 62.4 95 56.8
CDE02G2114 Ceratophyllum demersum HOM05D000091 ORTHO05D002116 3.5e-08 62.4 100 56.0
CDE01G0461 Ceratophyllum demersum HOM05D004577 ORTHO05D005062 4.6e-08 62.0 103 57.3
Peaxi162Scf00359g00123 Petunia axillaris HOM05D004577 ORTHO05D005062 4.6e-08 62.0 106 53.8
Solyc08g006050.2 Solanum lycopersicum HOM05D004577 ORTHO05D005062 4.6e-08 62.0 125 48.8
Aqoxy5G01161 Aquilegia oxysepala HOM05D004577 ORTHO05D005062 6.0e-08 61.6 147 45.6
Thhalv10008915m.g Eutrema salsugineum HOM05D004577 ORTHO05D005062 6.0e-08 61.6 139 44.6
Thhalv10011850m.g Eutrema salsugineum HOM05D004577 ORTHO05D005062 6.0e-08 61.6 106 51.9
THA.LOC104826365 Tarenaya hassleriana HOM05D004577 ORTHO05D005062 6.0e-08 61.6 113 51.3
Sc22g0002120 Simmondsia chinensis HOM05D004577 ORTHO05D005062 7.9e-08 61.2 95 56.8
BcaB02g10507 Brassica carinata HOM05D004577 ORTHO05D005062 1.0e-07 60.8 92 57.6
AL1G44500 Arabidopsis lyrata HOM05D004577 ORTHO05D005062 1.3e-07 60.5 140 45.7
EL10Ac7g17857 Beta vulgaris HOM05D004577 ORTHO05D005062 1.3e-07 60.5 93 57.0
CSS0050514 Camellia sinensis var. sinensis HOM05D004577 ORTHO05D005062 1.3e-07 60.5 89 61.8
Lj6g0018119 Lotus japonicus HOM05D004577 ORTHO05D005062 1.8e-07 60.1 95 57.9
Nitab4.5_0000904g0010 Nicotiana tabacum HOM05D004577 ORTHO05D005062 2.3e-07 59.7 113 50.4
Sp1g41840 Schrenkiella parvula HOM05D004577 ORTHO05D005062 3.0e-07 59.3 95 54.7
Solyc04g051850.3 Solanum lycopersicum HOM05D004577 ORTHO05D005062 3.0e-07 59.3 147 44.2
AT1G30475 Arabidopsis thaliana HOM05D004577 ORTHO05D005062 3.9e-07 58.9 91 57.1
Sopen04g023180 Solanum pennellii HOM05D004577 ORTHO05D005062 3.9e-07 58.9 147 44.2
PGSC0003DMG400016552 Solanum tuberosum HOM05D004577 ORTHO05D005062 3.9e-07 58.9 147 44.2
Dinv26646 Davidia involucrata HOM05D004577 ORTHO05D005062 6.7e-07 58.2 81 61.7
Migut.H01738 Erythranthe guttata HOM05D004577 ORTHO05D005062 1.1e-06 57.4 97 55.7
Nitab4.5_0005865g0040 Nicotiana tabacum HOM05D004577 ORTHO05D005062 1.1e-06 57.4 121 47.9
THA.LOC104798603 Tarenaya hassleriana HOM05D004577 ORTHO05D005062 1.1e-06 57.4 99 56.6
TWI39G1131 Tripterygium wilfordii HOM05D004577 ORTHO05D005062 1.1e-06 57.4 129 43.4
Glyma.10G109400 Glycine max HOM05D011393 ORTHO05D013493 1.5e-06 57.0 150 36.0
EL10Ac2g03806 Beta vulgaris HOM05D004577 ORTHO05D005062 1.9e-06 56.6 100 52.0
ECA240G1529 Erigeron canadensis HOM05D000491 ORTHO05D000359 1.9e-06 56.6 96 57.3
PGSC0003DMG400014846 Solanum tuberosum HOM05D004577 ORTHO05D005062 4.3e-06 55.5 71 47.9
HanXRQChr13g0408461 Helianthus annuus HOM05D004577 ORTHO05D005062 5.6e-06 55.1 127 44.9
HanXRQChr03g0080381 Helianthus annuus HOM05D004577 ORTHO05D005062 7.4e-06 54.7 103 52.4
HPP92_011618 Vanilla planifolia HOM05D004577 ORTHO05D005062 7.4e-06 54.7 98 53.1


User provided reference genes

Program Settings