Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.01G261900 Carya illinoinensis HOM05D006036 ORTHO05D007736 3.0e-122 441.8 215 100.0
Cfa001720 Carpinus fangiana HOM05D006036 ORTHO05D007736 6.3e-104 380.9 215 84.2
Haze_16816 Corylus avellana HOM05D006036 ORTHO05D007736 9.0e-103 377.1 215 84.7
QL08p052466 Quercus lobata HOM05D006036 ORTHO05D007736 1.8e-95 352.8 221 78.7
Prupe.2G145700 Prunus persica HOM05D006036 ORTHO05D007736 4.7e-91 338.2 219 77.2
Duzib133G1287 Durio zibethinus HOM05D006036 ORTHO05D007736 4.4e-89 331.6 223 75.8
Gohir.A08G134500 Gossypium hirsutum HOM05D006036 ORTHO05D007736 9.7e-89 330.5 220 73.6
TWI14G1308 Tripterygium wilfordii HOM05D006036 ORTHO05D007736 1.3e-88 330.1 223 74.0
RcHm_v2.0_Chr1g0350591 Rosa chinensis HOM05D006036 ORTHO05D007736 2.8e-88 328.9 227 73.6
Thecc.01G376100 Theobroma cacao HOM05D006036 ORTHO05D007736 4.8e-88 328.2 224 76.3
FAN10G3538 Fragaria x ananassa HOM05D006036 ORTHO05D007736 8.2e-88 327.4 222 75.7
FAN03G0372 Fragaria x ananassa HOM05D006036 ORTHO05D007736 3.1e-87 325.5 221 71.9
Nn1g01232 Nelumbo nucifera HOM05D006036 ORTHO05D007736 3.1e-87 325.5 217 73.7
FAN01G0425 Fragaria x ananassa HOM05D006036 ORTHO05D007736 5.3e-87 324.7 221 75.1
FvH4_7g11910 Fragaria vesca HOM05D006036 ORTHO05D007736 3.5e-86 322.0 222 75.7
Cpa.g.sc349.4 Carica papaya HOM05D006036 ORTHO05D007736 4.5e-86 321.6 219 71.7
Actinidia12688 Actinidia chinensis HOM05D006036 ORTHO05D007736 7.7e-86 320.9 217 76.0
Glyma.01G142900 Glycine max HOM05D006036 ORTHO05D007736 2.2e-85 319.3 222 70.7
Manes.05G045200 Manihot esculenta HOM05D006036 ORTHO05D007736 2.2e-85 319.3 224 70.5
Oeu037915.1 Olea europaea HOM05D006036 ORTHO05D007736 2.2e-85 319.3 227 69.2
Glyma.03G023900 Glycine max HOM05D006036 ORTHO05D007736 2.9e-85 318.9 220 71.8
Sc02g0002580 Simmondsia chinensis HOM05D006036 ORTHO05D007736 5.0e-85 318.2 222 69.8
Dinv32378 Davidia involucrata HOM05D006036 ORTHO05D007736 2.5e-84 315.8 201 77.6
Glyma.14G070200 Glycine max HOM05D006036 ORTHO05D007736 3.2e-84 315.5 219 70.3
MD02G1204100 Malus domestica HOM05D006036 ORTHO05D007736 5.5e-84 314.7 225 72.4
CANSAT56G2189 Cannabis sativa HOM05D006036 ORTHO05D007736 7.2e-84 314.3 220 70.9
Lalb_Chr07g0189801 Lupinus albus HOM05D006036 ORTHO05D007736 2.1e-83 312.8 216 69.4
Sed0006891 Sechium edule HOM05D006036 ORTHO05D007736 2.1e-83 312.8 222 70.3
Sed0014119 Sechium edule HOM05D006036 ORTHO05D007736 6.1e-83 311.2 227 68.3
GSVIVG01027612001 Vitis vinifera HOM05D006036 ORTHO05D007736 4.0e-82 308.5 219 70.3
PGR042G0035 Punica granatum HOM05D006036 ORTHO05D007736 5.2e-82 308.1 229 68.1
SalBow5G3583 Salvia bowleyana HOM05D006036 ORTHO05D007736 6.7e-82 307.8 228 69.3
CsaV3_6G006160 Cucumis sativus L. HOM05D006036 ORTHO05D007736 8.8e-82 307.4 226 69.5
Solyc01g091360.4 Solanum lycopersicum HOM05D006036 ORTHO05D007736 1.1e-81 307.0 216 70.8
Sopen01g037100 Solanum pennellii HOM05D006036 ORTHO05D007736 2.0e-81 306.2 216 70.4
Medtr4g023550 Medicago truncatula HOM05D006036 ORTHO05D007736 2.6e-81 305.8 204 70.6
SalBow5G0783 Salvia bowleyana HOM05D006036 ORTHO05D007736 2.6e-81 305.8 228 68.9
PGSC0003DMG400012774 Solanum tuberosum HOM05D006036 ORTHO05D007736 4.4e-81 305.1 215 68.8
Rhsim01G0147400 Rhododendron simsii HOM05D006036 ORTHO05D007736 7.5e-81 304.3 229 69.4
MSTRG.4890 Avicennia marina HOM05D006036 ORTHO05D007736 1.3e-80 303.5 227 67.8
Potri.002G148400 Populus trichocarpa HOM05D006036 ORTHO05D007736 1.7e-80 303.1 220 69.5
Phvul.010G084400 Phaseolus vulgaris HOM05D006036 ORTHO05D007736 2.8e-80 302.4 196 73.5
Psat7g231640 Pisum sativum HOM05D006036 ORTHO05D007736 2.8e-80 302.4 223 68.2
Sabra02G0117300 Salix brachista HOM05D006036 ORTHO05D007736 2.8e-80 302.4 221 69.2
Hund17020 Selenicereus undatus HOM05D006036 ORTHO05D007736 3.7e-80 302.0 230 67.4
Lj3g0008791 Lotus japonicus HOM05D006036 ORTHO05D007736 4.8e-80 301.6 222 68.9
Sabra02G0115600 Salix brachista HOM05D006036 ORTHO05D007736 4.8e-80 301.6 192 75.5
Aqoxy7G00627 Aquilegia oxysepala HOM05D006036 ORTHO05D007736 1.1e-79 300.4 206 70.4
Eucgr.E01417 Eucalyptus grandis HOM05D006036 ORTHO05D007736 1.4e-79 300.1 195 74.4
AUR62013628 Chenopodium quinoa HOM05D006036 ORTHO05D007736 1.8e-79 299.7 227 67.0
Ca_03013_v3 Cicer arietinum L. HOM05D006036 ORTHO05D007736 3.1e-79 298.9 188 73.9
TPR.G9852 Trifolium pratense HOM05D006036 ORTHO05D007736 3.1e-79 298.9 176 79.0
Cc02_g36690 Coffea canephora HOM05D006036 ORTHO05D007736 9.1e-79 297.4 225 67.1
MBI04_g35276_MAGBIO Magnolia biondii HOM05D006036 ORTHO05D007736 1.6e-78 296.6 207 69.1
EL10Ac1g00899 Beta vulgaris HOM05D006036 ORTHO05D007736 3.5e-78 295.4 223 67.3
CDE02G2016 Ceratophyllum demersum HOM05D006036 ORTHO05D007736 3.5e-78 295.4 191 74.3
Ah.16g109830 Amaranthus hybridus HOM05D006036 ORTHO05D007736 4.5e-78 295.0 228 67.5
Atru.chr5.310 Acer truncatum HOM05D006036 ORTHO05D007736 7.7e-78 294.3 218 68.8
unitig_8.g4983 Utricularia gibba HOM05D006036 ORTHO05D007736 1.7e-77 293.1 221 67.0
CARHR171200 Cardamine hirsuta HOM05D006036 ORTHO05D007736 2.9e-77 292.4 220 68.2
Glyma.08G286100 Glycine max HOM05D006036 ORTHO05D007736 2.9e-77 292.4 203 69.0
AL5G43130 Arabidopsis lyrata HOM05D006036 ORTHO05D007736 5.0e-77 291.6 218 68.3
THA.LOC104802443 Tarenaya hassleriana HOM05D006036 ORTHO05D007736 1.5e-76 290.0 220 67.7
DCAR_031531 Daucus carota HOM05D006036 ORTHO05D007736 2.5e-76 289.3 204 72.1
HanXRQChr16g0520241 Helianthus annuus HOM05D006036 ORTHO05D007736 2.5e-76 289.3 228 67.1
Carub.0005s2756 Capsella rubella HOM05D006036 ORTHO05D007736 3.2e-76 288.9 218 69.3
ECA234G4399 Erigeron canadensis HOM05D006036 ORTHO05D007736 1.2e-75 287.0 201 69.7
Sp5g02440 Schrenkiella parvula HOM05D006036 ORTHO05D007736 2.7e-75 285.8 217 68.7
Aa31LG10G15050 Aethionema arabicum HOM05D006036 ORTHO05D007736 3.6e-75 285.4 219 69.4
Thhalv10006234m.g Eutrema salsugineum HOM05D006036 ORTHO05D007736 8.0e-75 284.3 216 68.1
Lsat_1_v5_gn_4_40940 Lactuca sativa HOM05D006036 ORTHO05D007736 1.0e-74 283.9 234 64.1
arahy.Tifrunner.gnm1.ann1.B3VI1A Arachis hypogaea HOM05D006036 ORTHO05D007736 2.3e-74 282.7 175 75.4
AT3G60810 Arabidopsis thaliana HOM05D006036 ORTHO05D007736 3.0e-74 282.3 218 68.3
BolC8t51167H Brassica oleracea HOM05D006036 ORTHO05D007736 3.0e-74 282.3 217 68.2
A09p53070 Brassica napus HOM05D006036 ORTHO05D007736 4.0e-74 282.0 217 67.7
Ciclev10022362m.g Citrus clementina HOM05D006036 ORTHO05D007736 4.0e-74 282.0 218 66.5
BcaC07g40602 Brassica carinata HOM05D006036 ORTHO05D007736 8.8e-74 280.8 217 67.7
C08p35770 Brassica napus HOM05D006036 ORTHO05D007736 8.8e-74 280.8 219 67.1
Lj9A569G50 Lonicera japonica HOM05D006036 ORTHO05D007736 8.8e-74 280.8 206 67.0
BcaC07g42642 Brassica carinata HOM05D006036 ORTHO05D007736 3.4e-73 278.9 220 65.9
SEGI_01363 Sequoiadendron giganteum HOM05D006036 ORTHO05D007736 1.3e-72 276.9 198 65.7
CSS0011162 Camellia sinensis var. sinensis HOM05D006036 ORTHO05D007736 3.7e-72 275.4 221 65.6
CSS0022013 Camellia sinensis var. sinensis HOM05D006036 ORTHO05D007736 6.3e-72 274.6 222 65.3
Medtr7g074920 Medicago truncatula HOM05D006036 ORTHO05D007736 1.8e-71 273.1 193 66.3
Nitab4.5_0005372g0020 Nicotiana tabacum HOM05D006036 ORTHO05D007736 3.1e-71 272.3 225 63.6
BraA09t40733Z Brassica rapa HOM05D006036 ORTHO05D007736 4.1e-71 271.9 215 67.0
Zm00001eb210410 Zea mays HOM05D006036 ORTHO05D007736 5.9e-70 268.1 180 68.9
FAN10G0738 Fragaria x ananassa HOM05D006036 ORTHO05D007736 3.8e-69 265.4 151 83.4
ATR0810G113 Amborella trichopoda HOM05D006036 ORTHO05D007736 1.5e-68 263.5 179 70.4
AUR62004220 Chenopodium quinoa HOM05D006036 ORTHO05D007736 5.5e-68 261.5 173 71.7
arahy.Tifrunner.gnm1.ann1.Y8TVDJ Arachis hypogaea HOM05D006036 ORTHO05D007736 5.2e-66 255.0 156 76.9
vmacro21008 Vaccinium macrocarpon HOM05D006036 ORTHO05D007736 5.2e-66 255.0 152 80.3
vmacro21009 Vaccinium macrocarpon HOM05D006036 ORTHO05D007736 8.8e-66 254.2 204 65.2
Os03g0858700 Oryza sativa ssp. japonica HOM05D006036 ORTHO05D007736 2.0e-65 253.1 178 65.2
Gohir.D08G155400 Gossypium hirsutum HOM05D006036 ORTHO05D007736 5.7e-65 251.5 181 70.7
PSO782G0421 Papaver somniferum HOM05D006036 ORTHO05D007736 1.1e-63 247.3 227 57.3
VMungo0251G0926 Vigna mungo HOM05D006036 ORTHO05D007736 1.4e-63 246.9 196 64.8
Mapoly0007s0216 Marchantia polymorpha HOM05D006036 ORTHO05D007736 1.0e-61 240.7 179 61.5
PSO478G2400 Papaver somniferum HOM05D006036 ORTHO05D007736 1.0e-61 240.7 231 55.8
AagrBONN_evm.TU.Sc2ySwM_117.1558 Anthoceros agrestis HOM05D006036 ORTHO05D007736 2.9e-61 239.2 169 66.3
Pp3c23_9860 Physcomitrium patens HOM05D006036 ORTHO05D007736 1.1e-60 237.3 203 57.6
VMungo0331G0186 Vigna mungo HOM05D006036 ORTHO05D007736 1.9e-60 236.5 232 55.2
Hma1.2p1_1122F.1_g259290 Hydrangea macrophylla HOM05D006036 ORTHO05D007736 8.0e-59 231.1 174 66.7
SMO143G0045 Selaginella moellendorffii HOM05D006036 ORTHO05D007736 1.5e-57 226.9 151 69.5
ClCG06G000370 Citrullus lanatus HOM05D006036 ORTHO05D007736 7.5e-57 224.6 221 55.2
COL.COLO4_12549 Corchorus olitorius HOM05D006036 ORTHO05D007736 1.2e-54 217.2 166 70.5
Nitab4.5_0000457g0290 Nicotiana tabacum HOM05D006036 ORTHO05D007736 2.7e-54 216.1 210 57.6
SGA_v2.0_scaffold153G37014 Striga asiatica HOM05D006036 ORTHO05D001464 1.0e-50 204.1 219 50.7
Cre11.g468750 Chlamydomonas reinhardtii HOM05D006036 ORTHO05D007736 1.0e-45 187.6 174 54.6
MELO3C035247.2 Cucumis melo HOM05D006036 ORTHO05D007736 8.6e-45 184.5 106 81.1
Peaxi162Scf00021g01720 Petunia axillaris HOM05D006036 ORTHO05D007736 1.6e-43 180.3 227 48.0
Glyma.09G269100 Glycine max HOM05D006036 ORTHO05D007736 1.2e-41 174.1 141 65.2
CAN.G388.12 Capsicum annuum HOM05D006036 ORTHO05D007736 3.7e-40 169.1 108 73.1
FAN06G1700 Fragaria x ananassa HOM05D006036 ORTHO05D007736 9.2e-39 164.5 95 83.2
Lalb_Chr03g0039561 Lupinus albus HOM05D006036 ORTHO05D007736 5.6e-36 155.2 125 62.4
Migut.N01635 Erythranthe guttata HOM05D006036 ORTHO05D007736 8.9e-34 147.9 134 56.0
Ca_19909_v3 Cicer arietinum L. HOM05D006036 ORTHO05D007736 1.5e-33 147.1 98 67.3
Ca_07819_v3 Cicer arietinum L. HOM05D006036 ORTHO05D007736 4.9e-32 142.1 95 68.4
FAN06G2896 Fragaria x ananassa HOM05D006036 ORTHO05D007736 1.1e-31 141.0 76 85.5
Ciclev10033315m.g Citrus clementina HOM05D006036 ORTHO05D007736 1.6e-30 137.1 142 53.5
MELO3C034959.2 Cucumis melo HOM05D006036 ORTHO05D007736 3.5e-30 136.0 112 64.3
CBR_g54966 Chara braunii HOM05D006036 ORTHO05D007736 8.6e-29 131.3 83 72.3
MCO13G087 Micromonas commoda HOM05D006036 ORTHO05D007736 1.9e-28 130.2 159 45.3
Gorai.007G091200 Gossypium raimondii HOM05D001611 ORTHO05D001464 7.6e-25 118.2 92 64.1
Gohir.D11G085366 Gossypium hirsutum HOM05D001611 ORTHO05D001464 1.4e-23 114.0 92 62.0
Lalb_Chr03g0039551 Lupinus albus HOM05D006036 ORTHO05D007736 2.7e-22 109.8 81 61.7
Psat3g116040 Pisum sativum HOM05D006036 ORTHO05D007736 4.6e-22 109.0 84 61.9
Lj1g0011795 Lotus japonicus HOM05D006036 ORTHO05D007736 4.0e-18 95.9 54 75.9
arahy.Tifrunner.gnm1.ann1.WD24C8 Arachis hypogaea HOM05D006036 ORTHO05D007736 6.9e-18 95.1 62 69.4
Gorai.004G161600 Gossypium raimondii HOM05D006036 ORTHO05D007736 7.6e-17 91.7 95 54.7
arahy.Tifrunner.gnm1.ann1.BW32E7 Arachis hypogaea HOM05D006036 ORTHO05D000587 1.2e-14 84.3 59 66.1
Pp3c13_20640 Physcomitrium patens HOM05D020894 ORTHO05D021334 4.2e-07 59.3 131 35.1
Cre16.g674200 Chlamydomonas reinhardtii HOM05D020894 ORTHO05D021334 1.2e-06 57.8 191 27.7


User provided reference genes

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