Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.01G257600 Carya illinoinensis HOM05D004815 ORTHO05D005742 2.5e-217 758.4 370 100.0
Haze_16704 Corylus avellana HOM05D004815 ORTHO05D005742 7.3e-185 650.6 370 85.1
Cfa001810 Carpinus fangiana HOM05D004815 ORTHO05D005742 4.9e-181 637.9 372 83.6
RcHm_v2.0_Chr1g0351921 Rosa chinensis HOM05D004815 ORTHO05D005742 2.3e-170 602.4 370 77.3
MD02G1195800 Malus domestica HOM05D004815 ORTHO05D005742 1.4e-167 593.2 370 75.4
FAN01G1324 Fragaria x ananassa HOM05D004815 ORTHO05D005742 1.7e-165 586.3 370 74.6
Duzib133G0793 Durio zibethinus HOM05D004815 ORTHO05D005742 2.9e-165 585.5 372 76.9
FAN10G2694 Fragaria x ananassa HOM05D004815 ORTHO05D005742 1.4e-164 583.2 370 74.3
GSVIVG01027589001 Vitis vinifera HOM05D004815 ORTHO05D005742 7.8e-163 577.4 370 75.1
Thecc.01G370200 Theobroma cacao HOM05D004815 ORTHO05D005742 1.0e-162 577.0 370 76.8
Ciclev10020702m.g Citrus clementina HOM05D004815 ORTHO05D005742 3.9e-162 575.1 370 75.9
Potri.002G152300 Populus trichocarpa HOM05D004815 ORTHO05D005742 6.6e-162 574.3 370 75.4
Atru.chr5.381_Atru.chr5.382 Acer truncatum HOM05D004815 ORTHO05D005742 1.5e-161 573.2 370 76.8
Potri.014G078300 Populus trichocarpa HOM05D004815 ORTHO05D005742 4.3e-161 571.6 370 75.4
Manes.05G040900 Manihot esculenta HOM05D004815 ORTHO05D005742 5.6e-161 571.2 370 74.3
Gorai.001G172600 Gossypium raimondii HOM05D004815 ORTHO05D005742 8.1e-160 567.4 371 74.9
Manes.01G263200 Manihot esculenta HOM05D004815 ORTHO05D005742 8.1e-160 567.4 370 74.6
Gohir.D07G150500 Gossypium hirsutum HOM05D004815 ORTHO05D005742 1.8e-159 566.2 371 74.9
TAR629G0568 Trochodendron aralioides HOM05D004815 ORTHO05D005742 2.4e-159 565.8 371 74.7
FAN06G3277 Fragaria x ananassa HOM05D004815 ORTHO05D005742 3.1e-159 565.5 367 73.0
FAN06G3416 Fragaria x ananassa HOM05D004815 ORTHO05D005742 3.1e-159 565.5 367 73.0
Gohir.A07G144600 Gossypium hirsutum HOM05D004815 ORTHO05D005742 5.3e-159 564.7 371 74.1
Cpa.g.sc18.178 Carica papaya HOM05D004815 ORTHO05D005742 7.9e-155 550.8 370 73.2
Lj3g0020425 Lotus japonicus HOM05D004815 ORTHO05D005742 1.0e-154 550.4 370 73.0
TWI59G0538 Tripterygium wilfordii HOM05D004815 ORTHO05D005742 1.0e-154 550.4 370 71.4
Sabra14G0053800 Salix brachista HOM05D004815 ORTHO05D005742 1.8e-154 549.7 378 72.2
TWI23G0970 Tripterygium wilfordii HOM05D004815 ORTHO05D005742 1.9e-153 546.2 370 72.7
CANSAT56G0719 Cannabis sativa HOM05D004815 ORTHO05D005742 4.3e-153 545.0 371 71.2
Medtr8g033040 Medicago truncatula HOM05D004815 ORTHO05D005742 7.4e-153 544.3 370 72.4
TAR636G2513 Trochodendron aralioides HOM05D004815 ORTHO05D005742 2.1e-152 542.7 369 71.8
Lalb_Chr17g0340041 Lupinus albus HOM05D004815 ORTHO05D005742 2.8e-152 542.3 370 71.1
Glyma.03G018700 Glycine max HOM05D004815 ORTHO05D005742 1.1e-151 540.4 370 71.6
Ca_23774_v3 Cicer arietinum L. HOM05D004815 ORTHO05D005742 1.2e-150 537.0 370 72.4
MELO3C022521.2 Cucumis melo HOM05D004815 ORTHO05D005742 7.6e-150 534.3 370 67.6
Actinidia31455 Actinidia chinensis HOM05D004815 ORTHO05D005742 2.9e-149 532.3 375 68.5
CsaV3_6G005940 Cucumis sativus L. HOM05D004815 ORTHO05D005742 4.2e-148 528.5 370 67.3
Lalb_Chr10g0097591 Lupinus albus HOM05D004815 ORTHO05D005742 7.9e-147 524.2 370 69.5
QL08p050919 Quercus lobata HOM05D004815 ORTHO05D005742 3.0e-146 522.3 329 79.3
TPR.G17395 Trifolium pratense HOM05D004815 ORTHO05D005742 3.9e-146 521.9 371 70.9
VMungo0331G0142 Vigna mungo HOM05D004815 ORTHO05D005742 4.3e-145 518.5 370 70.3
arahy.Tifrunner.gnm1.ann1.GZV6IQ Arachis hypogaea HOM05D004815 ORTHO05D005742 5.7e-145 518.1 370 69.7
TPR.G17590 Trifolium pratense HOM05D004815 ORTHO05D005742 7.4e-145 517.7 369 70.2
Lj7C524T7 Lonicera japonica HOM05D004815 ORTHO05D005742 1.6e-144 516.5 370 68.9
arahy.Tifrunner.gnm1.ann1.32Q5MD Arachis hypogaea HOM05D004815 ORTHO05D005742 2.1e-144 516.2 370 69.2
PGR031G2979 Punica granatum HOM05D004815 ORTHO05D005742 5.8e-142 508.1 370 66.8
FvH4_7g12840 Fragaria vesca HOM05D004815 ORTHO05D005742 7.6e-142 507.7 329 72.9
Glyma.07G080200 Glycine max HOM05D004815 ORTHO05D005742 2.2e-141 506.1 353 71.1
Sabra02G0120600 Salix brachista HOM05D004815 ORTHO05D005742 1.9e-140 503.1 370 68.6
Cc02_g37080 Coffea canephora HOM05D004815 ORTHO05D005742 4.2e-140 501.9 370 65.7
Aqoxy7G00483 Aquilegia oxysepala HOM05D004815 ORTHO05D005742 3.5e-139 498.8 371 67.1
EL10Ac1g00976 Beta vulgaris HOM05D004815 ORTHO05D005742 3.0e-138 495.7 372 66.1
AUR62033376 Chenopodium quinoa HOM05D004815 ORTHO05D005742 8.7e-138 494.2 371 65.8
Cc09_g02920 Coffea canephora HOM05D004815 ORTHO05D005742 8.7e-138 494.2 370 65.4
Rhsim07G0022400 Rhododendron simsii HOM05D004815 ORTHO05D005742 3.3e-137 492.3 361 66.5
Sed0027777 Sechium edule HOM05D004815 ORTHO05D005742 1.3e-136 490.3 372 63.2
Duzib138G1778 Durio zibethinus HOM05D004815 ORTHO05D005742 2.2e-136 489.6 340 70.3
Psat4g200880 Pisum sativum HOM05D004815 ORTHO05D005742 6.3e-136 488.0 348 71.0
Phvul.010G089200 Phaseolus vulgaris HOM05D004815 ORTHO05D005742 1.8e-135 486.5 350 70.3
SGA_v2.0_scaffold153G37057 Striga asiatica HOM05D004815 ORTHO05D005742 1.8e-135 486.5 370 64.1
MBI04_g28567_MAGBIO Magnolia biondii HOM05D004815 ORTHO05D005742 1.1e-132 477.2 360 65.6
ClCG06G000170 Citrullus lanatus HOM05D004815 ORTHO05D005742 1.4e-132 476.9 370 62.4
Nitab4.5_0013229g0020 Nicotiana tabacum HOM05D004815 ORTHO05D005742 2.5e-132 476.1 372 62.6
PGSC0003DMG400000005 Solanum tuberosum HOM05D004815 ORTHO05D005742 4.2e-132 475.3 372 62.1
Lalb_Chr19g0127171 Lupinus albus HOM05D004815 ORTHO05D005742 1.2e-131 473.8 375 64.0
Solyc01g091900.3 Solanum lycopersicum HOM05D004815 ORTHO05D005742 1.6e-131 473.4 373 62.5
Prupe.2G152800 Prunus persica HOM05D004815 ORTHO05D005742 2.1e-131 473.0 306 75.5
Aa31LG1G27160 Aethionema arabicum HOM05D004815 ORTHO05D005742 2.7e-131 472.6 374 64.2
SalBow7G0216 Salvia bowleyana HOM05D004815 ORTHO05D005742 8.8e-130 467.6 414 58.0
CAN.G170.62 Capsicum annuum HOM05D004815 ORTHO05D005742 2.5e-129 466.1 372 61.3
Migut.B01673 Erythranthe guttata HOM05D004815 ORTHO05D005742 4.3e-129 465.3 370 62.4
Carub.0004s2834 Capsella rubella HOM05D004815 ORTHO05D005742 1.4e-127 460.3 382 62.8
MSTRG.20784 Avicennia marina HOM05D004815 ORTHO05D005742 1.8e-127 459.9 370 63.0
MD02G1195700 Malus domestica HOM05D004815 ORTHO05D005742 6.9e-127 458.0 335 66.3
Sp4g27730 Schrenkiella parvula HOM05D004815 ORTHO05D005742 1.2e-126 457.2 378 61.1
Oeu059223.1 Olea europaea HOM05D003859 ORTHO05D004927 2.6e-126 456.1 371 62.8
Nn1g01309 Nelumbo nucifera HOM05D004815 ORTHO05D005742 3.4e-126 455.7 326 68.7
BcaB01g03258 Brassica carinata HOM05D004815 ORTHO05D005742 7.7e-126 454.5 374 61.5
PSO478G4379 Papaver somniferum HOM05D004815 ORTHO05D005742 7.7e-126 454.5 374 62.0
PSO782G2788 Papaver somniferum HOM05D004815 ORTHO05D005742 2.2e-125 453.0 374 62.0
vmacro13348 Vaccinium macrocarpon HOM05D004815 ORTHO05D005742 2.2e-125 453.0 401 58.4
Hund27330 Selenicereus undatus HOM05D004815 ORTHO05D005742 2.9e-125 452.6 387 61.0
Actinidia09581 Actinidia chinensis HOM05D004815 ORTHO05D005742 7.2e-124 448.0 321 67.0
BraA05t19537Z Brassica rapa HOM05D004815 ORTHO05D005742 9.4e-124 447.6 382 60.2
AL4G44860 Arabidopsis lyrata HOM05D004815 ORTHO05D005742 1.2e-123 447.2 376 60.6
BcaC02g12192 Brassica carinata HOM05D004815 ORTHO05D005742 1.2e-123 447.2 382 59.4
BolC4t22283H Brassica oleracea HOM05D004815 ORTHO05D005742 1.2e-123 447.2 382 59.4
A03p25310 Brassica napus HOM05D004815 ORTHO05D005742 1.6e-123 446.8 381 60.6
Thhalv10001499m.g Eutrema salsugineum HOM05D004815 ORTHO05D005742 2.7e-123 446.0 379 61.7
A05p05650 Brassica napus HOM05D004815 ORTHO05D005742 3.6e-123 445.7 378 59.5
BcaB02g09018 Brassica carinata HOM05D004815 ORTHO05D005742 6.1e-123 444.9 384 59.6
Sc02g0002260 Simmondsia chinensis HOM05D004815 ORTHO05D005742 7.9e-123 444.5 349 62.2
ECA236G5005 Erigeron canadensis HOM05D004815 ORTHO05D005742 2.3e-122 443.0 376 60.1
Ciclev10023945m.g Citrus clementina HOM05D004815 ORTHO05D005742 3.0e-122 442.6 370 62.7
AT2G45690 Arabidopsis thaliana HOM05D004815 ORTHO05D005742 5.1e-122 441.8 374 60.7
BcaC01g05112 Brassica carinata HOM05D004815 ORTHO05D005742 5.1e-122 441.8 386 59.6
C03p30200 Brassica napus HOM05D004815 ORTHO05D005742 6.7e-122 441.4 385 59.7
DCAR_006900 Daucus carota HOM05D004815 ORTHO05D005742 1.5e-121 440.3 349 63.6
BolC3t15369H Brassica oleracea HOM05D004815 ORTHO05D005742 2.0e-121 439.9 385 59.7
HanXRQChr06g0169351 Helianthus annuus HOM05D004815 ORTHO05D005742 6.3e-120 434.9 372 58.9
Peaxi162Scf00021g00232 Petunia axillaris HOM05D004815 ORTHO05D005742 8.2e-120 434.5 349 62.5
BraA03t11735Z Brassica rapa HOM05D004815 ORTHO05D005742 3.5e-118 429.1 381 59.8
AUR62004281 Chenopodium quinoa HOM05D004815 ORTHO05D005742 9.4e-116 421.0 371 58.2
HanXRQChr04g0121731 Helianthus annuus HOM05D004815 ORTHO05D005742 4.7e-115 418.7 353 60.6
unitig_749.g14360 Utricularia gibba HOM05D003518 ORTHO05D005164 6.1e-115 418.3 349 61.3
Lsat_1_v5_gn_7_8041 Lactuca sativa HOM05D004815 ORTHO05D005742 3.0e-114 416.0 356 60.4
Solyc06g074460.4 Solanum lycopersicum HOM05D004815 ORTHO05D005742 3.0e-114 416.0 370 54.1
C04p06610 Brassica napus HOM05D004815 ORTHO05D005742 1.7e-112 410.2 360 58.1
Sopen06g030930 Solanum pennellii HOM05D004815 ORTHO05D005742 1.7e-112 410.2 370 53.5
Ah.15g094120 Amaranthus hybridus HOM05D001215 ORTHO05D001387 6.3e-112 408.3 385 54.8
CAN.G919.13 Capsicum annuum HOM05D004815 ORTHO05D005742 1.8e-111 406.8 370 53.2
Sed0004795 Sechium edule HOM05D004815 ORTHO05D005742 2.4e-111 406.4 306 62.7
THA.LOC104817269 Tarenaya hassleriana HOM05D004815 ORTHO05D005742 2.0e-110 403.3 332 61.1
HPP92_004960 Vanilla planifolia HOM05D004815 ORTHO05D005742 5.0e-109 398.7 374 53.2
Lalb_Chr01g0021231 Lupinus albus HOM05D004815 ORTHO05D005742 1.9e-108 396.7 370 58.4
Sopen01g037670 Solanum pennellii HOM05D004815 ORTHO05D005742 2.3e-106 389.8 323 60.1
Nitab4.5_0001901g0030 Nicotiana tabacum HOM05D004815 ORTHO05D005742 8.8e-106 387.9 373 51.5
Nitab4.5_0005459g0020 Nicotiana tabacum HOM05D004815 ORTHO05D005742 6.3e-104 381.7 394 50.8
Peaxi162Scf00114g00211 Petunia axillaris HOM05D004815 ORTHO05D005742 1.1e-100 370.9 346 52.3
Zm00001eb208530 Zea mays HOM05D004815 ORTHO05D005742 4.2e-100 369.0 381 49.9
Nitab4.5_0001127g0010 Nicotiana tabacum HOM05D004815 ORTHO05D005742 8.6e-93 344.7 372 50.5
COL.COLO4_12639 Corchorus olitorius HOM05D004815 ORTHO05D005742 3.6e-91 339.3 232 69.4
SHI13492 Sapria himalayana HOM05D004815 ORTHO05D005742 4.4e-89 332.4 480 42.3
CSS0047010 Camellia sinensis var. sinensis HOM05D004815 ORTHO05D005742 2.7e-86 323.2 273 59.7
Dinv43746 Davidia involucrata HOM05D004815 ORTHO05D005742 7.8e-86 321.6 300 57.0
CARHR140910 Cardamine hirsuta HOM05D004815 ORTHO05D005742 7.3e-84 315.1 300 56.3
CSS0023679 Camellia sinensis var. sinensis HOM05D004815 ORTHO05D005742 9.5e-84 314.7 287 56.4
Eucgr.D02393 Eucalyptus grandis HOM05D004815 ORTHO05D005742 1.6e-83 313.9 241 62.7
SEGI_15318 Sequoiadendron giganteum HOM05D004815 ORTHO05D005742 1.6e-83 313.9 383 45.4
Mapoly0047s0037 Marchantia polymorpha HOM05D004815 ORTHO05D005742 2.0e-81 307.0 410 42.0
Os02g0123200 Oryza sativa ssp. japonica HOM05D004815 ORTHO05D005742 5.8e-81 305.4 342 46.8
Dinv32412 Davidia involucrata HOM05D004815 ORTHO05D005742 2.3e-77 293.5 253 60.1
SMO147G0187 Selaginella moellendorffii HOM05D004815 ORTHO05D005742 3.7e-72 276.2 385 40.0
ATR0757G223 Amborella trichopoda HOM05D004815 ORTHO05D005742 2.7e-70 270.0 222 60.4
AagrBONN_evm.TU.Sc2ySwM_228.5506 Anthoceros agrestis HOM05D004815 ORTHO05D005742 1.3e-69 267.7 387 37.7
Eucgr.D02410 Eucalyptus grandis HOM05D004815 ORTHO05D005742 4.0e-66 256.1 241 54.8
Gohir.A11G084200 Gossypium hirsutum HOM05D004815 ORTHO05D005742 2.0e-65 253.8 255 54.9
PGSC0003DMG400007146 Solanum tuberosum HOM05D004815 ORTHO05D005742 4.9e-64 249.2 260 49.2
CDE11G0368 Ceratophyllum demersum HOM05D004815 ORTHO05D005742 1.7e-61 240.7 211 54.0
Eucgr.D02397 Eucalyptus grandis HOM05D004815 ORTHO05D005742 2.0e-57 227.3 205 58.5
Pp3c20_6130 Physcomitrium patens HOM05D004815 ORTHO05D005742 2.6e-57 226.9 337 39.2
AagrBONN_evm.TU.Sc2ySwM_369.172 Anthoceros agrestis HOM05D004815 ORTHO05D005742 7.8e-54 215.3 389 33.9
ATR0757G181 Amborella trichopoda HOM05D004815 ORTHO05D005742 1.1e-50 204.9 153 66.0
FAN10G0991 Fragaria x ananassa HOM05D004815 ORTHO05D005742 4.4e-49 199.5 115 78.3
CDE11G0585 Ceratophyllum demersum HOM05D004815 ORTHO05D005742 3.8e-48 196.4 137 67.9
Aa31LG6G10720 Aethionema arabicum HOM05D004815 ORTHO05D005742 5.1e-29 132.9 149 52.3
Glyma.04G148600 Glycine max HOM05D004815 ORTHO05D005742 2.1e-27 127.5 74 81.1
PRCOL_00005618 Prasinoderma coloniale HOM05D004815 ORTHO05D005742 8.2e-27 125.6 425 23.5
CBR_g3181 Chara braunii HOM05D004815 ORTHO05D005742 3.2e-23 113.6 202 32.7
COL.COLO4_24134 Corchorus olitorius HOM05D000638 ORTHO05D000801 3.7e-19 100.1 73 69.9
Aa31sc1021G10 Aethionema arabicum HOM05D004815 ORTHO05D005742 6.3e-19 99.4 120 45.8
RcHm_v2.0_Chr1g0351871 Rosa chinensis HOM05D004815 ORTHO05D005742 4.6e-14 83.2 51 76.5
Lj3g0018651 Lotus japonicus HOM05D004815 ORTHO05D005742 6.1e-14 82.8 42 90.5
MBI11_g13051_MAGBIO Magnolia biondii HOM05D004815 ORTHO05D005742 1.4e-10 71.6 75 49.3
Hund16967 Selenicereus undatus HOM05D004815 ORTHO05D005742 1.4e-10 71.6 89 47.2
RcHm_v2.0_Chr1g0351881 Rosa chinensis HOM05D004815 ORTHO05D005742 5.9e-09 66.2 39 79.5
C07p07230 Brassica napus HOM05D004815 ORTHO05D005742 1.1e-07 62.0 59 52.5


User provided reference genes

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