Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.01G256500 Carya illinoinensis HOM05D005382 ORTHO05D006795 8.1e-112 407.1 214 100.0
CiPaw.02G163400 Carya illinoinensis HOM05D005382 ORTHO05D006795 1.0e-93 347.1 214 85.0
Potri.003G184925 Populus trichocarpa HOM05D005382 ORTHO05D006795 4.6e-83 311.6 219 75.3
Manes.11G069200 Manihot esculenta HOM05D005382 ORTHO05D006795 7.9e-83 310.8 213 77.0
Potri.001G041900 Populus trichocarpa HOM05D005382 ORTHO05D006795 1.4e-82 310.1 219 74.4
Thecc.06G046600 Theobroma cacao HOM05D005382 ORTHO05D006795 8.8e-82 307.4 206 77.2
Gorai.007G085500 Gossypium raimondii HOM05D005382 ORTHO05D006795 8.2e-80 300.8 210 75.2
Sabra03G0135500 Salix brachista HOM05D005382 ORTHO05D006795 2.4e-79 299.3 219 73.1
Sabra01G0028700 Salix brachista HOM05D005382 ORTHO05D006795 3.1e-79 298.9 219 72.1
Gohir.A11G075200 Gossypium hirsutum HOM05D005382 ORTHO05D006795 5.3e-79 298.1 211 73.9
COL.COLO4_26772 Corchorus olitorius HOM05D005382 ORTHO05D006795 1.5e-78 296.6 209 77.0
RcHm_v2.0_Chr2g0132311 Rosa chinensis HOM05D005382 ORTHO05D006795 4.5e-78 295.0 217 74.7
FAN09G0036 Fragaria x ananassa HOM05D005382 ORTHO05D006795 3.8e-77 292.0 216 73.6
FAN05G5289 Fragaria x ananassa HOM05D005382 ORTHO05D006795 1.4e-76 290.0 217 72.8
MD17G1226400 Malus domestica HOM05D005382 ORTHO05D006795 2.5e-76 289.3 220 70.9
FvH4_6g28270 Fragaria vesca HOM05D005382 ORTHO05D006795 4.2e-76 288.5 217 72.4
Glyma.08G220400 Glycine max HOM05D005382 ORTHO05D006795 4.2e-76 288.5 208 74.0
MD09G1227600 Malus domestica HOM05D005382 ORTHO05D006795 1.4e-74 283.5 212 70.3
Cfa001857 Carpinus fangiana HOM05D005382 ORTHO05D006795 1.8e-74 283.1 178 82.6
Hma1.2p1_0329F.1_g127290 Hydrangea macrophylla HOM05D005382 ORTHO05D006795 3.9e-74 282.0 207 73.9
Manes.04G100900 Manihot esculenta HOM05D005382 ORTHO05D006795 3.3e-73 278.9 196 75.5
Gohir.D11G079900 Gossypium hirsutum HOM05D005382 ORTHO05D006795 7.4e-73 277.7 190 76.8
ClCG09G003490 Citrullus lanatus HOM05D005382 ORTHO05D006795 9.7e-73 277.3 210 70.5
Lj3g0027435 Lotus japonicus HOM05D005382 ORTHO05D006795 2.8e-72 275.8 208 69.7
Medtr4g007700 Medicago truncatula HOM05D005382 ORTHO05D006795 8.2e-72 274.2 190 73.7
Nitab4.5_0004738g0090 Nicotiana tabacum HOM05D005382 ORTHO05D006795 8.2e-72 274.2 208 69.7
Nitab4.5_0002700g0060 Nicotiana tabacum HOM05D005382 ORTHO05D006795 3.1e-71 272.3 206 69.9
Ciclev10026461m.g Citrus clementina HOM05D005382 ORTHO05D006795 4.1e-71 271.9 204 73.0
Nn8g40079 Nelumbo nucifera HOM05D005382 ORTHO05D006795 4.1e-71 271.9 214 71.0
PGR102G0492 Punica granatum HOM05D005382 ORTHO05D006795 4.1e-71 271.9 204 70.6
TAR625G1145 Trochodendron aralioides HOM05D005382 ORTHO05D006795 7.0e-71 271.2 211 69.2
MELO3C023486.2 Cucumis melo HOM05D005382 ORTHO05D006795 1.2e-70 270.4 204 71.1
FAN14G0578 Fragaria x ananassa HOM05D005382 ORTHO05D006795 1.2e-70 270.4 193 75.6
Actinidia08935 Actinidia chinensis HOM05D005382 ORTHO05D006795 3.5e-70 268.9 213 70.0
Glyma.07G021400 Glycine max HOM05D005382 ORTHO05D006795 3.5e-70 268.9 209 68.9
QL05p036845 Quercus lobata HOM05D005382 ORTHO05D006795 4.5e-70 268.5 172 82.0
TWI12G1456 Tripterygium wilfordii HOM05D005382 ORTHO05D006795 4.5e-70 268.5 199 72.4
CAN.G1008.7 Capsicum annuum HOM05D005382 ORTHO05D006795 2.2e-69 266.2 204 67.6
Nn8g40087 Nelumbo nucifera HOM05D005382 ORTHO05D006795 6.5e-69 264.6 214 68.7
Phvul.008G253200 Phaseolus vulgaris HOM05D005382 ORTHO05D006795 1.1e-68 263.8 207 68.6
Cc04_g05300 Coffea canephora HOM05D005382 ORTHO05D006795 1.9e-68 263.1 206 68.0
CsaV3_7G031710 Cucumis sativus L. HOM05D005382 ORTHO05D006795 1.9e-68 263.1 207 69.1
Peaxi162Scf00314g01032 Petunia axillaris HOM05D005382 ORTHO05D006795 2.5e-68 262.7 215 65.6
THA.LOC104808172 Tarenaya hassleriana HOM05D005382 ORTHO05D006795 2.5e-68 262.7 214 67.3
Sed0008280 Sechium edule HOM05D005382 ORTHO05D006795 3.2e-68 262.3 199 68.8
HanXRQChr04g0100021 Helianthus annuus HOM05D005382 ORTHO05D006795 5.5e-68 261.5 202 67.3
VMungo0647G2390 Vigna mungo HOM05D005382 ORTHO05D006795 5.5e-68 261.5 212 67.9
DCAR_021374 Daucus carota HOM05D005382 ORTHO05D006795 2.1e-67 259.6 208 68.3
Lsat_1_v5_gn_1_30801 Lactuca sativa HOM05D005382 ORTHO05D006795 4.7e-67 258.5 209 67.9
Eucgr.F03985 Eucalyptus grandis HOM05D005382 ORTHO05D006795 6.1e-67 258.1 202 69.3
Aa31LG4G1250 Aethionema arabicum HOM05D005382 ORTHO05D006795 1.4e-66 256.9 218 65.1
Thhalv10019121m.g Eutrema salsugineum HOM05D005382 ORTHO05D006795 3.0e-66 255.8 209 68.4
Rhsim12G0185400 Rhododendron simsii HOM05D005382 ORTHO05D006795 4.0e-66 255.4 241 62.2
MSTRG.22842 Avicennia marina HOM05D005382 ORTHO05D006795 5.2e-66 255.0 229 61.6
ECA247G2189 Erigeron canadensis HOM05D005382 ORTHO05D006795 1.5e-65 253.4 196 68.9
FAN02G4537 Fragaria x ananassa HOM05D005382 ORTHO05D006795 1.5e-65 253.4 181 75.7
Dinv21426 Davidia involucrata HOM05D005382 ORTHO05D006795 3.3e-65 252.3 207 66.2
Rhsim08G0203100 Rhododendron simsii HOM05D005382 ORTHO05D006795 4.4e-65 251.9 231 63.2
Sp5g34800 Schrenkiella parvula HOM05D005382 ORTHO05D006795 4.4e-65 251.9 207 68.6
AT1G80940 Arabidopsis thaliana HOM05D005382 ORTHO05D006795 5.7e-65 251.5 209 67.5
CSS0039254 Camellia sinensis var. sinensis HOM05D005382 ORTHO05D006795 5.7e-65 251.5 228 63.6
Carub.0002s2660 Capsella rubella HOM05D005382 ORTHO05D006795 5.7e-65 251.5 215 67.0
Eucgr.J03130 Eucalyptus grandis HOM05D005382 ORTHO05D006795 9.7e-65 250.8 191 71.2
Haze_16689 Corylus avellana HOM05D005382 ORTHO05D006795 1.3e-64 250.4 153 86.3
ECA232G4196 Erigeron canadensis HOM05D005382 ORTHO05D006795 1.7e-64 250.0 206 67.5
GSVIVG01016103001 Vitis vinifera HOM05D005382 ORTHO05D006795 2.2e-64 249.6 203 69.0
A07p26960 Brassica napus HOM05D005382 ORTHO05D006795 3.7e-64 248.8 216 66.2
BraA07t30340Z Brassica rapa HOM05D005382 ORTHO05D006795 3.7e-64 248.8 216 66.2
C06p29630 Brassica napus HOM05D005382 ORTHO05D006795 4.8e-64 248.4 216 65.7
Lalb_Chr25g0278731 Lupinus albus HOM05D005382 ORTHO05D006795 6.3e-64 248.1 200 64.0
TPR.G3367 Trifolium pratense HOM05D005382 ORTHO05D006795 6.3e-64 248.1 177 72.9
BcaNung04166 Brassica carinata HOM05D005382 ORTHO05D006795 1.4e-63 246.9 216 64.8
BolC6t38128H Brassica oleracea HOM05D005382 ORTHO05D006795 1.4e-63 246.9 210 67.6
HanXRQChr09g0274181 Helianthus annuus HOM05D005382 ORTHO05D006795 3.1e-63 245.7 210 65.2
Psat7g262200 Pisum sativum HOM05D005382 ORTHO05D006795 9.1e-63 244.2 176 71.6
MSTRG.11221 Avicennia marina HOM05D005382 ORTHO05D006795 1.2e-62 243.8 228 58.8
BcaB02g08711 Brassica carinata HOM05D005382 ORTHO05D006795 1.2e-62 243.8 215 65.6
AL2G40440 Arabidopsis lyrata HOM05D005382 ORTHO05D006795 1.6e-62 243.4 218 64.7
BcaB02g07237 Brassica carinata HOM05D005382 ORTHO05D006795 2.7e-62 242.7 199 67.8
Duzib192G0805 Durio zibethinus HOM05D005382 ORTHO05D006795 2.7e-62 242.7 157 80.3
EL10Ac8g19398 Beta vulgaris HOM05D005382 ORTHO05D006795 3.5e-62 242.3 196 66.8
Sopen03g036580 Solanum pennellii HOM05D005382 ORTHO05D006795 3.5e-62 242.3 218 61.5
CDE04G1090 Ceratophyllum demersum HOM05D005382 ORTHO05D006795 4.5e-62 241.9 194 68.0
Solyc03g117670.4 Solanum lycopersicum HOM05D005382 ORTHO05D006795 5.9e-62 241.5 218 61.5
BcaC08g47533 Brassica carinata HOM05D005382 ORTHO05D006795 7.7e-62 241.1 216 63.9
A07p44750 Brassica napus HOM05D005382 ORTHO05D006795 7.7e-62 241.1 215 63.7
BolC6t40373H Brassica oleracea HOM05D005382 ORTHO05D006795 7.7e-62 241.1 216 63.9
vmacro16842 Vaccinium macrocarpon HOM05D005382 ORTHO05D006795 7.7e-62 241.1 198 67.2
C06p53570 Brassica napus HOM05D005382 ORTHO05D006795 1.0e-61 240.7 204 66.2
TWI75G0559 Tripterygium wilfordii HOM05D005382 ORTHO05D006795 1.7e-61 240.0 179 72.1
BraA07t31983Z Brassica rapa HOM05D005382 ORTHO05D006795 3.8e-61 238.8 215 63.3
Duzib235G0288 Durio zibethinus HOM05D005382 ORTHO05D006795 3.8e-61 238.8 157 79.6
AUR62032996 Chenopodium quinoa HOM05D005382 ORTHO05D006795 1.1e-60 237.3 198 66.2
MBI15_g08404_MAGBIO Magnolia biondii HOM05D005382 ORTHO05D006795 1.1e-60 237.3 205 63.4
Migut.I00626 Erythranthe guttata HOM05D005382 ORTHO05D006795 1.9e-60 236.5 213 60.6
Sc12g0008250 Simmondsia chinensis HOM05D005382 ORTHO05D006795 1.9e-60 236.5 205 64.9
MSTRG.9395 Avicennia marina HOM05D005382 ORTHO05D006795 4.2e-60 235.3 197 63.5
Prupe.3G103600 Prunus persica HOM05D005382 ORTHO05D006795 4.2e-60 235.3 148 79.7
Lsat_1_v5_gn_4_85061 Lactuca sativa HOM05D005382 ORTHO05D006795 3.6e-59 232.3 213 61.5
Lalb_Chr01g0011991 Lupinus albus HOM05D005382 ORTHO05D006795 3.6e-59 232.3 198 63.1
SGA_v2.0_scaffold515G52664 Striga asiatica HOM05D003096 ORTHO05D003521 4.7e-59 231.9 215 60.5
PSO782G0145 Papaver somniferum HOM05D005382 ORTHO05D006795 6.1e-59 231.5 197 66.5
PSO063G0682 Papaver somniferum HOM05D005382 ORTHO05D006795 3.0e-58 229.2 198 66.7
Oeu003125.1 Olea europaea HOM05D005382 ORTHO05D006795 3.4e-57 225.7 178 68.5
arahy.Tifrunner.gnm1.ann1.7IZ6IW Arachis hypogaea HOM05D005382 ORTHO05D006795 3.7e-56 222.2 208 62.5
Lj5A81T85 Lonicera japonica HOM05D005382 ORTHO05D006795 4.8e-56 221.9 188 64.9
SGA_v2.0_scaffold74G24593 Striga asiatica HOM05D005382 ORTHO05D006795 4.8e-56 221.9 192 62.5
CARHR073510 Cardamine hirsuta HOM05D005382 ORTHO05D006795 1.1e-55 220.7 180 67.8
SalBow1G1272 Salvia bowleyana HOM05D005382 ORTHO05D006795 1.1e-55 220.7 166 70.5
arahy.Tifrunner.gnm1.ann1.HUQR60 Arachis hypogaea HOM05D005382 ORTHO05D006795 1.8e-55 219.9 208 62.0
Oeu051555.1 Olea europaea HOM05D005382 ORTHO05D006795 7.0e-55 218.0 159 73.6
PGSC0003DMG400014155 Solanum tuberosum HOM05D005382 ORTHO05D006795 3.2e-52 209.1 139 74.1
CDE07G1687 Ceratophyllum demersum HOM05D005382 ORTHO05D006795 1.6e-51 206.8 141 76.6
HPP92_010348 Vanilla planifolia HOM05D005382 ORTHO05D006795 1.6e-51 206.8 204 59.8
Os02g0793900 Oryza sativa ssp. japonica HOM05D005382 ORTHO05D006795 2.7e-51 206.1 200 62.0
Zm00001eb257680 Zea mays HOM05D005382 ORTHO05D006795 3.6e-51 205.7 203 58.6
ATR0580G392 Amborella trichopoda HOM05D005382 ORTHO05D006795 4.7e-51 205.3 194 62.9
AUR62034069 Chenopodium quinoa HOM05D007611 ORTHO05D006795 6.1e-51 204.9 180 64.4
CANSAT56G2690 Cannabis sativa HOM05D005382 ORTHO05D006795 1.0e-45 187.6 185 55.7
Cpa.g.c28380.1 Carica papaya HOM05D005382 ORTHO05D006795 6.6e-45 184.9 128 72.7
Ah.14g085670 Amaranthus hybridus HOM05D005382 ORTHO05D006795 5.2e-42 175.3 192 54.7
Mapoly0128s0009 Marchantia polymorpha HOM05D005382 ORTHO05D006795 2.6e-41 172.9 132 66.7
SMO145G0139 Selaginella moellendorffii HOM05D005382 ORTHO05D006795 9.8e-41 171.0 131 64.9
Pp3c16_25700 Physcomitrium patens HOM05D005382 ORTHO05D006795 6.4e-40 168.3 127 66.9
Pp3c25_9780 Physcomitrium patens HOM05D005382 ORTHO05D006795 2.4e-39 166.4 128 67.2
SEGI_41275 Sequoiadendron giganteum HOM05D005382 ORTHO05D006795 4.1e-39 165.6 131 66.4
Atru.chr1.2804_Atru.chr1.2805 Acer truncatum HOM05D005382 ORTHO05D006795 3.5e-38 162.5 199 54.8
SEGI_02613 Sequoiadendron giganteum HOM05D005382 ORTHO05D006795 5.2e-34 148.7 113 67.3
Hund12559 Selenicereus undatus HOM05D005382 ORTHO05D006795 7.5e-33 144.8 139 60.4
Actinidia36864 Actinidia chinensis HOM05D005382 ORTHO05D006795 9.8e-33 144.4 207 45.4
CSS0015514 Camellia sinensis var. sinensis HOM05D005382 ORTHO05D006795 4.1e-31 139.0 130 63.8
BcaB07g33703 Brassica carinata HOM05D005382 ORTHO05D006795 9.2e-31 137.9 143 55.9
unitig_22.g6275 Utricularia gibba HOM05D005382 ORTHO05D006795 9.2e-23 111.3 77 77.9
BcaB07g33704 Brassica carinata HOM05D005382 ORTHO05D006795 1.5e-20 104.0 75 70.7
BcaB07g33705 Brassica carinata HOM05D005382 ORTHO05D006795 1.5e-20 104.0 75 70.7
Actinidia26580 Actinidia chinensis HOM05D005382 ORTHO05D006795 1.4e-15 87.4 70 70.0
AagrBONN_evm.TU.Sc2ySwM_117.2014 Anthoceros agrestis HOM05D005382 ORTHO05D006795 9.2e-15 84.7 67 64.2
Actinidia26581 Actinidia chinensis HOM05D005382 ORTHO05D054410 1.6e-14 84.0 136 38.2
TPR.G1583 Trifolium pratense HOM05D005382 ORTHO05D006795 4.0e-10 69.3 45 77.8
QL05p036841 Quercus lobata HOM05D005382 ORTHO05D338076 3.2e-07 59.7 40 80.0


User provided reference genes

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