Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.01G245400 Carya illinoinensis HOM05D007863 ORTHO05D009265 1.6e-43 179.1 94 100.0
QL05p028236 Quercus lobata HOM05D007863 ORTHO05D009265 3.9e-18 94.7 93 66.7
Haze_16524 Corylus avellana HOM05D007863 ORTHO05D009265 7.7e-14 80.5 97 54.6
Prupe.3G082000 Prunus persica HOM05D007863 ORTHO05D009265 7.7e-14 80.5 95 54.7
MD17G1207500 Malus domestica HOM05D007863 ORTHO05D009265 5.0e-13 77.8 96 54.2
Cfa001994 Carpinus fangiana HOM05D007863 ORTHO05D009265 6.5e-13 77.4 97 54.6
Hma1.2p1_0515F.1_g170180 Hydrangea macrophylla HOM05D007863 ORTHO05D009265 1.4e-12 76.3 101 54.5
Gohir.D10G076000 Gossypium hirsutum HOM05D007863 ORTHO05D009265 3.2e-12 75.1 96 52.1
Gorai.011G081800 Gossypium raimondii HOM05D007863 ORTHO05D009265 3.2e-12 75.1 96 52.1
RcHm_v2.0_Chr2g0136401 Rosa chinensis HOM05D007863 ORTHO05D009265 5.5e-12 74.3 100 55.0
Cpa.g.sc10.233 Carica papaya HOM05D007863 ORTHO05D009265 7.2e-12 73.9 49 77.6
Thecc.06G070300 Theobroma cacao HOM05D007863 ORTHO05D009265 7.2e-12 73.9 64 67.2
COL.COLO4_12919 Corchorus olitorius HOM05D007863 ORTHO05D009265 9.4e-12 73.6 97 50.5
PGR102G1764 Punica granatum HOM05D007863 ORTHO05D009265 9.4e-12 73.6 49 79.6
Gohir.A10G075500 Gossypium hirsutum HOM05D007863 ORTHO05D009265 2.7e-11 72.0 96 51.0
Nitab4.5_0001764g0040 Nicotiana tabacum HOM05D007863 ORTHO05D009265 2.7e-11 72.0 47 76.6
Potri.003G062300 Populus trichocarpa HOM05D007863 ORTHO05D009265 3.6e-11 71.6 64 67.2
Sabra03G0036200 Salix brachista HOM05D007863 ORTHO05D009265 6.1e-11 70.9 94 51.1
Rhsim08G0215300 Rhododendron simsii HOM05D007863 ORTHO05D009265 1.4e-10 69.7 89 51.7
arahy.Tifrunner.gnm1.ann1.JQ3RYK Arachis hypogaea HOM05D007863 ORTHO05D009265 1.8e-10 69.3 84 53.6
CAN.G407.102 Capsicum annuum HOM05D007863 ORTHO05D009265 1.8e-10 69.3 57 66.7
Solyc03g116510.1 Solanum lycopersicum HOM05D007863 ORTHO05D009265 1.8e-10 69.3 64 64.1
Potri.001G171701 Populus trichocarpa HOM05D007863 ORTHO05D009265 2.3e-10 68.9 94 51.1
TWI12G0528 Tripterygium wilfordii HOM05D007863 ORTHO05D009265 3.0e-10 68.6 78 59.0
Sopen03g035400 Solanum pennellii HOM05D007863 ORTHO05D009265 3.9e-10 68.2 92 48.9
CSS0005162 Camellia sinensis var. sinensis HOM05D007863 ORTHO05D009265 5.1e-10 67.8 94 50.0
FvH4_6g30170 Fragaria vesca HOM05D007863 ORTHO05D009265 6.7e-10 67.4 98 51.0
FAN14G0247 Fragaria x ananassa HOM05D007863 ORTHO05D009265 6.7e-10 67.4 98 51.0
THA.LOC104808229 Tarenaya hassleriana HOM05D007863 ORTHO05D009265 6.7e-10 67.4 54 63.0
Ciclev10027122m.g Citrus clementina HOM05D007863 ORTHO05D009265 8.8e-10 67.0 96 51.0
Psat5g301160 Pisum sativum HOM05D007863 ORTHO05D009265 8.8e-10 67.0 83 48.2
Manes.04G115800 Manihot esculenta HOM05D007863 ORTHO05D009265 1.1e-09 66.6 64 59.4
Nitab4.5_0010254g0050 Nicotiana tabacum HOM05D007863 ORTHO05D009265 1.1e-09 66.6 85 50.6
FAN09G3905 Fragaria x ananassa HOM05D007863 ORTHO05D009265 1.5e-09 66.2 98 51.0
CANSAT56G0457 Cannabis sativa HOM05D007863 ORTHO05D009265 2.0e-09 65.9 45 77.8
FAN05G0465 Fragaria x ananassa HOM05D007863 ORTHO05D009265 2.0e-09 65.9 98 49.0
Migut.I00793 Erythranthe guttata HOM05D007863 ORTHO05D009265 2.5e-09 65.5 51 66.7
FAN02G1499 Fragaria x ananassa HOM05D007863 ORTHO05D009265 3.3e-09 65.1 98 49.0
Lj3g0003830 Lotus japonicus HOM05D007863 ORTHO05D009265 9.7e-09 63.5 85 49.4
TPR.G37228 Trifolium pratense HOM05D007863 ORTHO05D009265 9.7e-09 63.5 50 68.0
Ca_01070_v3 Cicer arietinum L. HOM05D007863 ORTHO05D009265 1.7e-08 62.8 98 42.9
AUR62011544 Chenopodium quinoa HOM05D007863 ORTHO05D009265 3.7e-08 61.6 46 71.7
Glyma.07G031800 Glycine max HOM05D007863 ORTHO05D009265 3.7e-08 61.6 50 60.0
ClCG09G002780 Citrullus lanatus HOM05D007863 ORTHO05D009265 4.8e-08 61.2 34 85.3
DCAR_025492 Daucus carota HOM05D007863 ORTHO05D009265 4.8e-08 61.2 73 54.8
Glyma.13G364100 Glycine max HOM05D007863 ORTHO05D009265 6.3e-08 60.8 79 45.6
Lalb_Chr14g0373721 Lupinus albus HOM05D007863 ORTHO05D009265 6.3e-08 60.8 97 41.2
Lj3g0006922 Lotus japonicus HOM05D007863 ORTHO05D009265 8.2e-08 60.5 100 43.0
Lalb_Chr04g0262451 Lupinus albus HOM05D007863 ORTHO05D009265 8.2e-08 60.5 86 46.5
Rhsim12G0192500 Rhododendron simsii HOM05D007863 ORTHO05D009265 8.2e-08 60.5 88 48.9
Medtr2g103440 Medicago truncatula HOM05D007863 ORTHO05D009265 1.1e-07 60.1 78 48.7
EL10Ac9g21922 Beta vulgaris HOM05D007863 ORTHO05D009265 1.4e-07 59.7 54 63.0
MELO3C023407.2 Cucumis melo HOM05D007863 ORTHO05D009265 1.4e-07 59.7 34 82.4
Atru.chr1.3052 Acer truncatum HOM05D007863 ORTHO05D009265 1.8e-07 59.3 34 88.2
Lalb_Chr25g0279481 Lupinus albus HOM05D007863 ORTHO05D009265 1.8e-07 59.3 54 61.1
Manes.11G054000 Manihot esculenta HOM05D007863 ORTHO05D009265 2.4e-07 58.9 74 52.7
Sed0016812 Sechium edule HOM05D007863 ORTHO05D009265 2.4e-07 58.9 33 84.8
Glyma.08G211000 Glycine max HOM05D007863 ORTHO05D009265 3.1e-07 58.5 49 61.2
Glyma.15G009600 Glycine max HOM05D007863 ORTHO05D009265 3.1e-07 58.5 54 64.8
SalBow2G0248 Salvia bowleyana HOM05D007863 ORTHO05D009265 3.1e-07 58.5 41 68.3
Lsat_1_v5_gn_5_132141 Lactuca sativa HOM05D007863 ORTHO05D009265 6.9e-07 57.4 42 69.0
DCAR_027319 Daucus carota HOM05D007526 ORTHO05D009350 9.1e-07 57.0 100 43.0
Sed0015441 Sechium edule HOM05D007863 ORTHO05D009265 9.1e-07 57.0 34 79.4
AT1G15385 Arabidopsis thaliana HOM05D010306 ORTHO05D009265 1.2e-06 56.6 49 63.3
MBI01_g37813_MAGBIO Magnolia biondii HOM05D007863 ORTHO05D009265 1.2e-06 56.6 53 62.3
CsaV3_7G032550 Cucumis sativus L. HOM05D007863 ORTHO05D009265 1.5e-06 56.2 34 76.5
Phvul.005G176000 Phaseolus vulgaris HOM05D007863 ORTHO05D009265 2.0e-06 55.8 67 52.2
Psat7g256040 Pisum sativum HOM05D007863 ORTHO05D009265 3.4e-06 55.1 56 53.6
Medtr4g011030 Medicago truncatula HOM05D007863 ORTHO05D009265 4.5e-06 54.7 56 53.6
ATR1156G029 Amborella trichopoda HOM05D007863 ORTHO05D009265 5.9e-06 54.3 65 50.8


User provided reference genes

Program Settings