Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.01G239700 Carya illinoinensis HOM05D004642 ORTHO05D005466 4.1e-256 888.3 725 100.0
QL05p024308 Quercus lobata HOM05D004642 ORTHO05D005466 4.1e-147 526.2 727 60.0
Prupe.3G071700 Prunus persica HOM05D004642 ORTHO05D005466 2.7e-114 417.2 715 44.2
Cfa002061 Carpinus fangiana HOM05D004642 ORTHO05D005466 2.2e-108 397.5 724 47.7
Potri.001G179600 Populus trichocarpa HOM05D004642 ORTHO05D005466 2.7e-98 364.0 758 44.1
MD17G1195700 Malus domestica HOM05D004642 ORTHO05D005466 6.6e-97 359.4 720 46.9
Thecc.06G086400 Theobroma cacao HOM05D004642 ORTHO05D005466 7.3e-96 355.9 773 51.1
MD09G1213800 Malus domestica HOM05D004642 ORTHO05D005466 1.2e-95 355.1 698 60.5
CiPaw.02G151400 Carya illinoinensis HOM05D004642 ORTHO05D005466 2.1e-95 354.4 723 49.7
Haze_16437 Corylus avellana HOM05D004642 ORTHO05D005466 1.5e-93 348.2 632 47.3
Rhsim08G0221000 Rhododendron simsii HOM05D004642 ORTHO05D005466 4.6e-90 336.7 715 46.4
Manes.11G047800 Manihot esculenta HOM05D004642 ORTHO05D005466 1.7e-89 334.7 733 58.7
RcHm_v2.0_Chr2g0137781 Rosa chinensis HOM05D004642 ORTHO05D005466 6.2e-87 326.2 728 60.7
Actinidia08974 Actinidia chinensis HOM05D004642 ORTHO05D005466 2.3e-86 324.3 717 49.1
FAN14G2337 Fragaria x ananassa HOM05D004642 ORTHO05D005466 7.5e-85 319.3 724 59.7
FvH4_6g31081 Fragaria vesca HOM05D004642 ORTHO05D005466 8.3e-84 315.8 733 59.6
GSVIVG01017115001 Vitis vinifera HOM05D004642 ORTHO05D005466 7.1e-83 312.8 536 57.3
Actinidia24760 Actinidia chinensis HOM05D004642 ORTHO05D005466 2.1e-82 311.2 540 46.1
Rhsim12G0197600 Rhododendron simsii HOM05D004642 ORTHO05D005466 4.6e-82 310.1 725 56.8
vmacro18915 Vaccinium macrocarpon HOM05D004642 ORTHO05D005466 2.5e-80 304.3 691 36.8
Nitab4.5_0005851g0030 Nicotiana tabacum HOM05D004642 ORTHO05D005466 2.8e-79 300.8 717 42.8
Duzib235G0715 Durio zibethinus HOM05D004642 ORTHO05D005466 5.2e-78 296.6 765 45.6
Hma1.2p1_0323F.1_g125210 Hydrangea macrophylla HOM05D004642 ORTHO05D005466 2.7e-74 284.3 723 49.1
COL.COLO4_30362 Corchorus olitorius HOM05D004642 ORTHO05D005466 1.1e-72 278.9 797 53.5
Nitab4.5_0000671g0060 Nicotiana tabacum HOM05D004642 ORTHO05D005466 1.9e-72 278.1 685 41.0
FAN09G1651 Fragaria x ananassa HOM05D004642 ORTHO05D005466 7.3e-72 276.2 734 57.6
Sabra01G0147200 Salix brachista HOM05D004642 ORTHO05D005466 7.3e-72 276.2 821 41.9
TAR626G0806 Trochodendron aralioides HOM05D004642 ORTHO05D005466 3.6e-71 273.9 713 42.5
Gohir.A05G129515 Gossypium hirsutum HOM05D004642 ORTHO05D005466 1.1e-70 272.3 732 46.4
Gorai.009G133100 Gossypium raimondii HOM05D004642 ORTHO05D005466 1.8e-70 271.6 542 41.0
Lalb_Chr14g0373421 Lupinus albus HOM05D004642 ORTHO05D005466 1.5e-69 268.5 685 39.0
Duzib192G0922 Durio zibethinus HOM05D004642 ORTHO05D005466 1.1e-67 262.3 733 50.5
Gohir.A09G083200 Gossypium hirsutum HOM05D004642 ORTHO05D005466 3.2e-67 260.8 767 43.5
Gohir.D05G129000 Gossypium hirsutum HOM05D004642 ORTHO05D005466 5.4e-67 260.0 735 46.8
Cc04_g03480 Coffea canephora HOM05D004642 ORTHO05D005466 1.2e-66 258.8 655 34.8
Eucgr.F03012 Eucalyptus grandis HOM05D004642 ORTHO05D005466 1.6e-66 258.5 663 54.3
Gohir.D09G083200 Gossypium hirsutum HOM05D004642 ORTHO05D005466 1.6e-66 258.5 767 43.4
Phvul.011G092000 Phaseolus vulgaris HOM05D004642 ORTHO05D005466 1.6e-66 258.5 747 52.6
Gorai.006G098800 Gossypium raimondii HOM05D004642 ORTHO05D005466 4.6e-66 256.9 771 42.7
CsaV3_7G033140 Cucumis sativus L. HOM05D004642 ORTHO05D005466 1.1e-64 252.3 728 45.9
ClCG09G002170 Citrullus lanatus HOM05D004642 ORTHO05D005466 3.6e-63 247.3 728 47.4
Sed0016916 Sechium edule HOM05D004642 ORTHO05D005466 9.0e-62 242.7 726 43.8
Ca_19383_v3 Cicer arietinum L. HOM05D004642 ORTHO05D005466 4.5e-61 240.4 725 49.5
Sed0016127 Sechium edule HOM05D004642 ORTHO05D005466 5.8e-61 240.0 584 47.9
CANSAT56G1090 Cannabis sativa HOM05D004642 ORTHO05D005466 4.9e-60 236.9 748 58.7
CSS0030593 Camellia sinensis var. sinensis HOM05D004642 ORTHO05D005466 6.4e-60 236.5 565 48.7
Lj3g0008789 Lotus japonicus HOM05D004642 ORTHO05D005466 1.1e-59 235.7 754 44.4
MELO3C024228.2 Cucumis melo HOM05D004642 ORTHO05D005466 1.9e-59 235.0 731 45.1
Nn8g39228 Nelumbo nucifera HOM05D004642 ORTHO05D005466 1.9e-59 235.0 735 48.2
VMungo1127G1134 Vigna mungo HOM05D004642 ORTHO05D005466 2.4e-59 234.6 749 46.1
Psat7g189080 Pisum sativum HOM05D004642 ORTHO05D005466 5.4e-59 233.4 694 52.3
PGR102G3321 Punica granatum HOM05D004642 ORTHO05D005466 9.3e-59 232.6 514 40.5
Nn2g11790 Nelumbo nucifera HOM05D004642 ORTHO05D005466 4.6e-58 230.3 732 45.1
TWI75G1656 Tripterygium wilfordii HOM05D004642 ORTHO05D005466 6.0e-58 229.9 748 48.5
Lalb_Chr04g0262651 Lupinus albus HOM05D004642 ORTHO05D005466 3.9e-57 227.3 714 40.8
Lsat_1_v5_gn_4_103580 Lactuca sativa HOM05D004642 ORTHO05D005466 8.7e-57 226.1 734 45.0
SalBow2G0306 Salvia bowleyana HOM05D004642 ORTHO05D005466 1.5e-56 225.3 659 41.6
FAN05G5776 Fragaria x ananassa HOM05D004642 ORTHO05D005466 9.6e-56 222.6 730 54.8
Atru.chr1.3266 Acer truncatum HOM05D004642 ORTHO05D005466 6.2e-55 219.9 731 45.1
Glyma.12G087100 Glycine max HOM05D004642 ORTHO05D005466 8.1e-55 219.5 744 37.6
vmacro16950 Vaccinium macrocarpon HOM05D004642 ORTHO05D005466 2.6e-53 214.5 723 45.0
Peaxi162Scf00015g00335 Petunia axillaris HOM05D004642 ORTHO05D005466 3.4e-53 214.2 517 49.3
CARHR091130 Cardamine hirsuta HOM05D004642 ORTHO05D005466 4.9e-52 210.3 531 36.7
Ciclev10025273m.g Citrus clementina HOM05D004642 ORTHO05D005466 1.1e-51 209.1 570 45.3
Hund00614 Selenicereus undatus HOM05D004642 ORTHO05D005466 1.1e-51 209.1 641 46.6
AUR62016441 Chenopodium quinoa HOM05D004642 ORTHO05D005466 3.2e-51 207.6 666 36.3
Medtr4g054960 Medicago truncatula HOM05D004642 ORTHO05D005466 7.1e-51 206.5 647 47.1
Solyc03g120230.3 Solanum lycopersicum HOM05D004642 ORTHO05D005466 1.2e-50 205.7 515 39.6
THA.LOC104817998 Tarenaya hassleriana HOM05D004642 ORTHO05D005466 2.7e-50 204.5 548 44.9
CAN.G438.64 Capsicum annuum HOM05D004642 ORTHO05D005466 1.3e-49 202.2 718 51.3
SGA_v2.0_scaffold4G01996 Striga asiatica HOM05D004642 ORTHO05D005466 3.0e-49 201.1 707 36.4
Sopen03g039110 Solanum pennellii HOM05D004642 ORTHO05D005466 2.5e-48 198.0 711 37.1
Dinv30514 Davidia involucrata HOM05D004642 ORTHO05D005466 5.7e-48 196.8 635 41.6
Aa31LG8G3170 Aethionema arabicum HOM05D004642 ORTHO05D005466 6.9e-46 189.9 525 31.4
Glyma.11G187500 Glycine max HOM05D004642 ORTHO05D005466 6.9e-46 189.9 746 38.5
Aqoxy7G01787 Aquilegia oxysepala HOM05D004642 ORTHO05D005466 9.0e-46 189.5 571 35.6
AT3G16000 Arabidopsis thaliana HOM05D004642 ORTHO05D005466 9.0e-46 189.5 555 47.4
AL3G28650 Arabidopsis lyrata HOM05D004642 ORTHO05D005466 1.5e-45 188.7 542 48.0
PGSC0003DMG400002564 Solanum tuberosum HOM05D004642 ORTHO05D005466 1.5e-45 188.7 676 36.4
PSO782G0786 Papaver somniferum HOM05D004642 ORTHO05D005466 2.6e-45 188.0 716 29.9
Lalb_Chr01g0012651 Lupinus albus HOM05D004642 ORTHO05D005466 3.8e-44 184.1 452 40.7
TPR.G15588 Trifolium pratense HOM05D004642 ORTHO05D005466 2.1e-42 178.3 635 48.7
AUR62011627 Chenopodium quinoa HOM05D004642 ORTHO05D005466 3.5e-42 177.6 666 36.2
arahy.Tifrunner.gnm1.ann1.CA04QB Arachis hypogaea HOM05D004642 ORTHO05D005466 6.1e-42 176.8 731 48.3
arahy.Tifrunner.gnm1.ann1.Z6VQ0W Arachis hypogaea HOM05D004642 ORTHO05D005466 6.1e-42 176.8 731 48.3
PSO063G4770 Papaver somniferum HOM05D004642 ORTHO05D005466 7.9e-42 176.4 484 40.3
Sc21g0005100 Simmondsia chinensis HOM05D004642 ORTHO05D005466 1.0e-41 176.0 691 48.8
Lj5A61G44 Lonicera japonica HOM05D004642 ORTHO05D005466 1.3e-41 175.6 447 37.1
Thhalv10020153m.g Eutrema salsugineum HOM05D004642 ORTHO05D005466 3.3e-40 171.0 533 29.3
Hund06610 Selenicereus undatus HOM05D004642 ORTHO05D005466 6.3e-39 166.8 760 37.1
Carub.0003s1573 Capsella rubella HOM05D004642 ORTHO05D005466 1.1e-38 166.0 531 46.5
Hma1.2p1_0323F.1_g125200 Hydrangea macrophylla HOM05D004642 ORTHO05D005466 1.8e-38 165.2 150 62.7
FAN02G1410 Fragaria x ananassa HOM05D004642 ORTHO05D005466 2.4e-38 164.9 203 54.2
Oeu033484.1 Olea europaea HOM05D004642 ORTHO05D005466 6.9e-38 163.3 511 30.3
A05p33450 Brassica napus HOM05D004642 ORTHO05D005466 2.0e-37 161.8 574 37.6
Sp3g14350 Schrenkiella parvula HOM05D004642 ORTHO05D005466 2.6e-37 161.4 542 42.8
BraA03t13110Z Brassica rapa HOM05D004642 ORTHO05D005466 4.5e-37 160.6 530 33.4
arahy.Tifrunner.gnm1.ann1.I53961 Arachis hypogaea HOM05D004642 ORTHO05D005466 1.9e-35 155.2 553 38.9
ECA248G0988 Erigeron canadensis HOM05D004642 ORTHO05D005466 2.7e-34 151.4 433 43.2
MSTRG.9454 Avicennia marina HOM05D004642 ORTHO05D005466 4.6e-34 150.6 527 51.0
BcaB04g18872 Brassica carinata HOM05D004642 ORTHO05D005466 7.9e-34 149.8 571 33.5
SalBow2G2616 Salvia bowleyana HOM05D004642 ORTHO05D005466 3.9e-33 147.5 498 41.4
TAR636G0382 Trochodendron aralioides HOM05D004642 ORTHO05D005466 3.9e-33 147.5 191 50.3
arahy.Tifrunner.gnm1.ann1.D5EQ93 Arachis hypogaea HOM05D004642 ORTHO05D005466 2.0e-32 145.2 556 38.8
MD09G1213500 Malus domestica HOM05D004642 ORTHO05D005466 7.4e-32 143.3 322 41.6
A03p39630 Brassica napus HOM05D004642 ORTHO05D005466 2.8e-31 141.4 529 31.6
BolC5t33791H Brassica oleracea HOM05D004642 ORTHO05D005466 4.8e-31 140.6 555 38.0
Ah.01g021290 Amaranthus hybridus HOM05D004642 ORTHO05D005466 1.8e-30 138.7 709 32.0
HanXRQChr16g0500971 Helianthus annuus HOM05D004642 ORTHO05D005466 4.1e-30 137.5 491 38.5
BraA05t22169Z Brassica rapa HOM05D004642 ORTHO05D005466 5.3e-30 137.1 571 39.4
BcaB06g25698 Brassica carinata HOM05D004642 ORTHO05D005466 5.9e-29 133.7 532 36.3
Dinv38051 Davidia involucrata HOM05D004642 ORTHO05D005466 1.0e-28 132.9 334 31.1
CDE06G0246 Ceratophyllum demersum HOM05D004642 ORTHO05D005466 1.7e-28 132.1 594 37.9
HanXRQChr09g0275271 Helianthus annuus HOM05D004642 ORTHO05D005466 3.9e-25 120.9 515 40.8
C05p50450 Brassica napus HOM05D004642 ORTHO05D005466 2.6e-24 118.2 556 39.0
EL10Ac9g21996 Beta vulgaris HOM05D004642 ORTHO05D005466 5.7e-24 117.1 167 47.9
CDE07G1358 Ceratophyllum demersum HOM05D004642 ORTHO05D005466 5.7e-24 117.1 467 24.2
HPP92_020045 Vanilla planifolia HOM05D004642 ORTHO05D005466 9.7e-24 116.3 709 32.9
Zm00001eb283760 Zea mays HOM05D004642 ORTHO05D005466 2.2e-23 115.2 664 31.0
TAR624G1258 Trochodendron aralioides HOM05D004642 ORTHO05D005466 8.2e-23 113.2 303 45.2
BcaC01g03843 Brassica carinata HOM05D004642 ORTHO05D005466 2.4e-22 111.7 528 32.4
C03p48030 Brassica napus HOM05D004642 ORTHO05D005466 2.4e-22 111.7 528 32.4
BolC3t17082H Brassica oleracea HOM05D004642 ORTHO05D005466 2.4e-22 111.7 528 32.4
BcaC09g48580 Brassica carinata HOM05D004642 ORTHO05D005466 5.3e-22 110.5 699 24.3
unitig_578.g16688 Utricularia gibba HOM05D004642 ORTHO05D005466 4.5e-21 107.5 759 26.1
Migut.D01034 Erythranthe guttata HOM05D004642 ORTHO05D005466 1.3e-20 105.9 689 35.3
BcaB04g20887 Brassica carinata HOM05D004642 ORTHO05D005466 6.5e-20 103.6 692 28.3
Os05g0180400 Oryza sativa ssp. japonica HOM05D004642 ORTHO05D005466 1.1e-19 102.8 664 40.8
SEGI_16798 Sequoiadendron giganteum HOM05D004642 ORTHO05D005466 3.2e-19 101.3 600 36.8
Cpa.g.sc1188.1 Carica papaya HOM05D004642 ORTHO05D005466 2.7e-18 98.2 306 57.8
SGA_v2.0_scaffold37G14818 Striga asiatica HOM05D004642 ORTHO05D005466 2.7e-18 98.2 713 41.5
MD09G1212900 Malus domestica HOM05D004642 ORTHO05D005466 3.9e-17 94.4 89 60.7
Os01g0180300 Oryza sativa ssp. japonica HOM05D004642 ORTHO05D005466 8.8e-17 93.2 485 35.9
MD09G1213400 Malus domestica HOM05D004642 ORTHO05D005466 1.5e-16 92.4 107 54.2
unitig_744.g24335 Utricularia gibba HOM05D004642 ORTHO05D005466 1.3e-15 89.4 365 27.9
ATR0037G055 Amborella trichopoda HOM05D004642 ORTHO05D005466 2.8e-15 88.2 688 32.4
Zm00001eb122200 Zea mays HOM05D004642 ORTHO05D005466 5.3e-14 84.0 265 28.3
Glyma.11G237600 Glycine max HOM05D004642 ORTHO05D005466 2.6e-13 81.6 388 26.5
CDE07G0399 Ceratophyllum demersum HOM05D004642 ORTHO05D005466 4.5e-13 80.9 462 22.7
MD09G1213300 Malus domestica HOM05D004642 ORTHO05D005466 3.0e-09 68.2 48 75.0
C01p48370 Brassica napus HOM05D004642 ORTHO05D005466 1.2e-08 66.2 531 24.1
COL.COLO4_36913 Corchorus olitorius HOM05D004642 ORTHO05D005466 9.8e-08 63.2 62 56.5
Thhalv10023042m.g Eutrema salsugineum HOM05D004642 ORTHO05D005466 2.2e-07 62.0 97 40.2
A01p38100 Brassica napus HOM05D015723 ORTHO05D003275 3.7e-07 61.2 384 25.0
BolC1t04795H Brassica oleracea HOM05D004642 ORTHO05D005466 6.3e-07 60.5 206 32.0
BolC1t04793H Brassica oleracea HOM05D004642 ORTHO05D005466 3.1e-06 58.2 229 31.0
CSS0005738 Camellia sinensis var. sinensis HOM05D004642 ORTHO05D005466 4.1e-06 57.8 48 60.4
BolC1t04796H Brassica oleracea HOM05D004642 ORTHO05D005466 7.0e-06 57.0 104 36.5
TAR624G0442 Trochodendron aralioides HOM05D004642 ORTHO05D005466 9.1e-06 56.6 45 66.7


User provided reference genes

Program Settings