Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.01G239100 Carya illinoinensis HOM05D003500 ORTHO05D003919 3.3e-115 418.7 260 100.0
Haze_16428 Corylus avellana HOM05D003500 ORTHO05D003919 2.3e-68 263.1 213 68.1
Cfa002069 Carpinus fangiana HOM05D003500 ORTHO05D003919 4.3e-67 258.8 258 58.5
QL05p023510 Quercus lobata HOM05D003500 ORTHO05D003919 1.9e-62 243.4 216 63.4
MD17G1194800 Malus domestica HOM05D003500 ORTHO05D003919 2.6e-43 179.9 182 61.5
Thecc.06G088400 Theobroma cacao HOM05D003500 ORTHO05D003919 2.6e-43 179.9 214 47.7
Dinv30507 Davidia involucrata HOM05D003500 ORTHO05D003919 7.5e-43 178.3 269 46.5
Potri.003G055200 Populus trichocarpa HOM05D003500 ORTHO05D003919 6.3e-42 175.3 212 50.5
Prupe.3G070800 Prunus persica HOM05D003500 ORTHO05D003919 8.2e-42 174.9 218 52.8
Duzib235G1266 Durio zibethinus HOM05D003500 ORTHO05D003919 1.1e-41 174.5 216 49.1
TWI18G0570 Tripterygium wilfordii HOM05D003500 ORTHO05D003919 1.6e-40 170.6 270 45.2
CANSAT56G2888 Cannabis sativa HOM05D003500 ORTHO05D003919 3.5e-40 169.5 194 52.6
FvH4_6g31220 Fragaria vesca HOM05D003500 ORTHO05D003919 7.7e-40 168.3 258 46.9
FAN14G5419 Fragaria x ananassa HOM05D003500 ORTHO05D003919 7.7e-40 168.3 258 46.9
ClCG07G013080 Citrullus lanatus HOM05D003500 ORTHO05D003919 1.7e-39 167.2 205 51.7
COL.COLO4_30382 Corchorus olitorius HOM05D003500 ORTHO05D003919 1.7e-39 167.2 207 48.8
RcHm_v2.0_Chr2g0137891 Rosa chinensis HOM05D003500 ORTHO05D003919 3.2e-38 162.9 166 62.0
Sc12g0009290 Simmondsia chinensis HOM05D003500 ORTHO05D003919 1.2e-37 161.0 264 40.2
vmacro18911 Vaccinium macrocarpon HOM05D003500 ORTHO05D003919 2.7e-37 159.8 283 41.7
PGR102G2146 Punica granatum HOM05D003500 ORTHO05D003919 6.1e-37 158.7 202 49.5
Sed0003187 Sechium edule HOM05D003500 ORTHO05D003919 1.4e-36 157.5 208 48.6
CsaV3_3G025090 Cucumis sativus L. HOM05D003500 ORTHO05D003919 4.0e-36 156.0 205 50.2
Sed0015651 Sechium edule HOM05D003500 ORTHO05D003919 5.2e-36 155.6 157 58.0
Manes.11G047100 Manihot esculenta HOM05D003500 ORTHO05D003919 1.2e-35 154.5 137 62.0
Ciclev10027012m.g Citrus clementina HOM05D003500 ORTHO05D003919 1.5e-35 154.1 153 54.9
TAR624G1157 Trochodendron aralioides HOM05D003500 ORTHO05D003919 1.3e-34 151.0 275 38.5
Rhsim08G0221500 Rhododendron simsii HOM05D003500 ORTHO05D003919 2.2e-34 150.2 220 46.8
Gohir.D03G063800 Gossypium hirsutum HOM05D003500 ORTHO05D003919 5.4e-33 145.6 211 45.0
Gohir.A02G121400 Gossypium hirsutum HOM05D003500 ORTHO05D003919 3.5e-32 142.9 211 44.1
Gorai.002G059400 Gossypium raimondii HOM05D003500 ORTHO05D003919 4.5e-32 142.5 211 44.5
Nitab4.5_0000671g0100 Nicotiana tabacum HOM05D003500 ORTHO05D003919 4.5e-32 142.5 184 48.4
Nitab4.5_0005851g0060 Nicotiana tabacum HOM05D003500 ORTHO05D003919 4.5e-32 142.5 184 47.3
Peaxi162Scf00015g10038 Petunia axillaris HOM05D003500 ORTHO05D003919 6.5e-31 138.7 213 43.7
Glyma.07G006100 Glycine max HOM05D003500 ORTHO05D003919 7.2e-30 135.2 209 42.6
Oeu000451.1 Olea europaea HOM05D003500 ORTHO05D003919 1.2e-29 134.4 161 50.9
Medtr4g012520 Medicago truncatula HOM05D003500 ORTHO05D003919 1.6e-29 134.0 214 43.9
CiPaw.07G208500 Carya illinoinensis HOM05D003500 ORTHO05D003919 6.1e-29 132.1 273 35.2
Glyma.08G206700 Glycine max HOM05D003500 ORTHO05D003919 1.0e-28 131.3 209 42.6
VMungo0331G1412 Vigna mungo HOM05D003500 ORTHO05D003919 1.4e-28 131.0 179 45.8
Ca_20390_v3 Cicer arietinum L. HOM05D003500 ORTHO05D003919 4.0e-28 129.4 143 53.8
Lalb_Chr04g0262681 Lupinus albus HOM05D003500 ORTHO05D003919 1.5e-27 127.5 160 47.5
Psat7g252240 Pisum sativum HOM05D003500 ORTHO05D003919 2.2e-26 123.6 133 52.6
Cfa013328 Carpinus fangiana HOM05D003500 ORTHO05D003919 3.7e-26 122.9 271 36.9
Eucgr.F03015 Eucalyptus grandis HOM05D003500 ORTHO05D003919 3.7e-26 122.9 197 39.6
Solyc03g120180.3 Solanum lycopersicum HOM05D003500 ORTHO05D003919 6.3e-26 122.1 169 45.6
Sabra03G0031200 Salix brachista HOM05D003500 ORTHO05D003919 1.8e-25 120.6 108 58.3
Haze_21819 Corylus avellana HOM05D003500 ORTHO05D003919 2.4e-25 120.2 225 40.9
CSS0016282 Camellia sinensis var. sinensis HOM05D003500 ORTHO05D003919 5.4e-25 119.0 172 48.8
CSS0048346 Camellia sinensis var. sinensis HOM05D003500 ORTHO05D003919 5.4e-25 119.0 172 48.8
Lj3g0021763 Lotus japonicus HOM05D003500 ORTHO05D003919 5.4e-25 119.0 204 41.7
Dinv14210 Davidia involucrata HOM05D003500 ORTHO05D003919 9.2e-25 118.2 273 34.8
QL12p026085 Quercus lobata HOM05D003500 ORTHO05D003919 9.2e-25 118.2 165 43.0
Manes.04G123600 Manihot esculenta HOM05D003500 ORTHO05D003919 1.6e-24 117.5 234 38.9
CSS0048332 Camellia sinensis var. sinensis HOM05D003500 ORTHO05D003919 2.7e-24 116.7 196 40.3
Lalb_Chr01g0012691 Lupinus albus HOM05D003500 ORTHO05D003919 2.7e-24 116.7 160 45.0
MELO3C012963.2 Cucumis melo HOM05D003500 ORTHO05D003919 3.5e-24 116.3 177 45.2
Potri.018G035800 Populus trichocarpa HOM05D003500 ORTHO05D003919 4.5e-24 115.9 222 39.2
SHI10927 Sapria himalayana HOM05D003500 ORTHO05D003919 1.3e-23 114.4 155 45.8
TAR636G0685 Trochodendron aralioides HOM05D003500 ORTHO05D003919 1.3e-23 114.4 247 36.0
Sabra18G0036300 Salix brachista HOM05D003500 ORTHO05D003919 1.9e-22 110.5 224 37.5
arahy.Tifrunner.gnm1.ann1.Y86J0E Arachis hypogaea HOM05D003500 ORTHO05D003919 2.5e-22 110.2 215 38.1
Dinv30238 Davidia involucrata HOM05D003500 ORTHO05D003919 2.5e-22 110.2 219 38.4
arahy.Tifrunner.gnm1.ann1.AD7SDK Arachis hypogaea HOM05D003500 ORTHO05D003919 4.3e-22 109.4 214 37.9
BcaB02g11002 Brassica carinata HOM05D003500 ORTHO05D003919 7.3e-22 108.6 174 42.5
Migut.D01030 Erythranthe guttata HOM05D003500 ORTHO05D003919 7.3e-22 108.6 133 45.9
Migut.I00867 Erythranthe guttata HOM05D003500 ORTHO05D003919 9.5e-22 108.2 142 46.5
SGA_v2.0_scaffold37G14827 Striga asiatica HOM05D003500 ORTHO05D003919 1.2e-21 107.8 169 43.2
Phvul.010G150500 Phaseolus vulgaris HOM05D003500 ORTHO05D003919 2.8e-21 106.7 141 45.4
MSTRG.4733 Avicennia marina HOM05D003500 ORTHO05D003919 4.7e-21 105.9 134 47.8
PSO063G0209 Papaver somniferum HOM05D003500 ORTHO05D003919 4.7e-21 105.9 162 46.9
Hma1.2p1_0140F.1_g063720 Hydrangea macrophylla HOM05D003500 ORTHO05D003919 6.1e-21 105.5 180 39.4
SGA_v2.0_scaffold68G23002 Striga asiatica HOM05D003500 ORTHO05D003919 6.1e-21 105.5 148 46.6
Atru.chr7.2303 Acer truncatum HOM05D003500 ORTHO05D003919 8.0e-21 105.1 224 35.7
Carub.0001s4135 Capsella rubella HOM05D003500 ORTHO05D003919 8.0e-21 105.1 155 45.2
SalBow2G3431 Salvia bowleyana HOM05D003500 ORTHO05D003919 8.0e-21 105.1 150 45.3
THA.LOC104810618 Tarenaya hassleriana HOM05D003500 ORTHO05D003919 8.0e-21 105.1 145 51.0
Thhalv10012010m.g Eutrema salsugineum HOM05D003500 ORTHO05D003919 1.0e-20 104.8 182 41.2
Actinidia15719 Actinidia chinensis HOM05D003500 ORTHO05D003919 1.4e-20 104.4 272 33.8
C06p07810 Brassica napus HOM05D003500 ORTHO05D003919 1.4e-20 104.4 157 45.2
Actinidia32755 Actinidia chinensis HOM05D003500 ORTHO05D003919 1.8e-20 104.0 118 58.5
BcaC08g43415 Brassica carinata HOM05D003500 ORTHO05D003919 1.8e-20 104.0 157 44.6
BolC6t35867H Brassica oleracea HOM05D003500 ORTHO05D003919 1.8e-20 104.0 157 44.6
Aqoxy7G01735 Aquilegia oxysepala HOM05D003500 ORTHO05D003919 4.0e-20 102.8 135 45.9
CARHR042490 Cardamine hirsuta HOM05D003500 ORTHO05D003919 4.0e-20 102.8 180 38.9
Sp1g38960 Schrenkiella parvula HOM05D003500 ORTHO05D003919 4.0e-20 102.8 174 40.8
BraA06t23403Z Brassica rapa HOM05D003500 ORTHO05D003919 5.2e-20 102.4 157 43.9
PSO782G3147 Papaver somniferum HOM05D003500 ORTHO05D003919 5.2e-20 102.4 162 45.1
arahy.Tifrunner.gnm1.ann1.V41S3G Arachis hypogaea HOM05D003500 ORTHO05D003919 8.9e-20 101.7 258 29.8
A06p01860 Brassica napus HOM05D003500 ORTHO05D003919 8.9e-20 101.7 157 43.9
Ciclev10009124m.g Citrus clementina HOM05D003500 ORTHO05D003919 8.9e-20 101.7 215 34.9
Actinidia14650 Actinidia chinensis HOM05D003500 ORTHO05D003919 4.4e-19 99.4 216 37.0
Rhsim07G0154900 Rhododendron simsii HOM05D003500 ORTHO05D003919 1.7e-18 97.4 214 35.5
Thecc.09G037900 Theobroma cacao HOM05D003500 ORTHO05D003919 1.7e-18 97.4 171 38.6
Manes.16G069800 Manihot esculenta HOM05D003500 ORTHO05D003919 2.2e-18 97.1 136 45.6
ClCG08G012430 Citrullus lanatus HOM05D003500 ORTHO05D003919 3.7e-18 96.3 275 32.0
GSVIVG01035753001 Vitis vinifera HOM05D003500 ORTHO05D003919 3.7e-18 96.3 233 33.5
Duzib168G0612 Durio zibethinus HOM05D003500 ORTHO05D003919 4.9e-18 95.9 221 37.1
Duzib187G1538 Durio zibethinus HOM05D003500 ORTHO05D003919 5.4e-17 92.4 224 35.7
Sed0000644 Sechium edule HOM05D003500 ORTHO05D003919 7.0e-17 92.0 153 41.2
MD15G1099900 Malus domestica HOM05D003500 ORTHO05D003919 9.2e-17 91.7 138 39.1
Gorai.001G029300 Gossypium raimondii HOM05D003500 ORTHO05D003919 2.0e-16 90.5 153 38.6
AL1G60570 Arabidopsis lyrata HOM05D003500 ORTHO05D003919 2.7e-16 90.1 175 39.4
Gohir.A07G024400 Gossypium hirsutum HOM05D003500 ORTHO05D003919 2.7e-16 90.1 194 36.1
FAN27G2449 Fragaria x ananassa HOM05D003500 ORTHO05D003919 3.5e-16 89.7 176 35.8
Sc09g0008940 Simmondsia chinensis HOM05D003500 ORTHO05D003919 3.5e-16 89.7 195 33.8
SGA_v2.0_scaffold169G38640 Striga asiatica HOM05D003500 ORTHO05D003919 3.5e-16 89.7 263 32.7
arahy.Tifrunner.gnm1.ann1.HR3BJH Arachis hypogaea HOM05D003500 ORTHO05D003919 6.0e-16 89.0 263 29.7
CsaV3_2G031120 Cucumis sativus L. HOM05D003500 ORTHO05D003919 6.0e-16 89.0 201 35.8
Oeu014656.1 Olea europaea HOM05D003500 ORTHO05D003919 6.0e-16 89.0 180 35.0
TPR.G31013 Trifolium pratense HOM05D003500 ORTHO05D003919 7.8e-16 88.6 211 32.2
FAN20G2191 Fragaria x ananassa HOM05D003500 ORTHO05D003919 1.7e-15 87.4 262 30.2
Gohir.D07G028000 Gossypium hirsutum HOM05D003500 ORTHO05D003919 2.3e-15 87.0 200 34.0
FvH4_2g36330 Fragaria vesca HOM05D003500 ORTHO05D003919 3.0e-15 86.7 262 29.8
Lalb_Chr03g0029341 Lupinus albus HOM05D003500 ORTHO05D003919 3.0e-15 86.7 184 35.3
RcHm_v2.0_Chr6g0305551 Rosa chinensis HOM05D003500 ORTHO05D003919 3.9e-15 86.3 187 35.8
MELO3C011162.2 Cucumis melo HOM05D003500 ORTHO05D003919 6.6e-15 85.5 195 35.9
Prupe.1G454700 Prunus persica HOM05D003500 ORTHO05D003919 6.6e-15 85.5 175 33.1
TWI32G0121 Tripterygium wilfordii HOM05D003500 ORTHO05D003919 6.6e-15 85.5 137 40.9
AT1G52343 Arabidopsis thaliana HOM05D003500 ORTHO05D003919 1.1e-14 84.7 177 39.0
Ca_26668_v3 Cicer arietinum L. HOM05D003500 ORTHO05D003919 1.9e-14 84.0 140 37.9
TPR.G21779 Trifolium pratense HOM05D003500 ORTHO05D003919 1.9e-14 84.0 211 30.8
DCAR_003060 Daucus carota HOM05D003500 ORTHO05D003919 2.5e-14 83.6 128 39.1
ECA248G2427 Erigeron canadensis HOM05D002222 ORTHO05D002354 2.5e-14 83.6 183 33.3
Lj8A606T22 Lonicera japonica HOM05D003500 ORTHO05D003919 2.5e-14 83.6 270 30.7
Eucgr.C02880 Eucalyptus grandis HOM05D003500 ORTHO05D003919 3.3e-14 83.2 221 31.7
Lsat_1_v5_gn_1_49081 Lactuca sativa HOM05D003500 ORTHO05D003919 9.5e-14 81.6 181 34.3
Migut.E01507 Erythranthe guttata HOM05D003500 ORTHO05D003919 1.6e-13 80.9 261 30.3
Ah.10g025530 Amaranthus hybridus HOM05D003500 ORTHO05D003919 8.0e-13 78.6 132 36.4
unitig_899.g14777 Utricularia gibba HOM05D003500 ORTHO05D003919 8.0e-13 78.6 138 42.0
AUR62024822 Chenopodium quinoa HOM05D003500 ORTHO05D003919 1.4e-12 77.8 220 26.8
AUR62032393 Chenopodium quinoa HOM05D003500 ORTHO05D003919 1.4e-12 77.8 205 29.8
Psat7g063400 Pisum sativum HOM05D003500 ORTHO05D003919 1.4e-12 77.8 165 35.2
Medtr6g007370 Medicago truncatula HOM05D003500 ORTHO05D003919 1.8e-12 77.4 179 32.4
Medtr7g446310 Medicago truncatula HOM05D003500 ORTHO05D003919 1.8e-12 77.4 179 32.4
SalBow2G0526 Salvia bowleyana HOM05D003500 ORTHO05D003919 1.8e-12 77.4 134 40.3
vmacro05351 Vaccinium macrocarpon HOM05D003500 ORTHO05D003919 3.1e-12 76.6 249 30.9
EL10Ac2g02525 Beta vulgaris HOM05D003500 ORTHO05D003919 4.0e-12 76.3 225 30.2
Glyma.12G113900 Glycine max HOM05D003500 ORTHO05D003919 4.0e-12 76.3 146 35.6
MBI11_g07535_MAGBIO Magnolia biondii HOM05D003500 ORTHO05D003919 4.0e-12 76.3 159 37.7
HanXRQChr01g0029371 Helianthus annuus HOM05D003500 ORTHO05D003919 5.2e-12 75.9 167 35.3
Phvul.011G117800 Phaseolus vulgaris HOM05D003500 ORTHO05D003919 2.0e-11 73.9 135 34.8
MSTRG.14007 Avicennia marina HOM05D003500 ORTHO05D003919 2.6e-11 73.6 162 37.0
VMungo1127G1234 Vigna mungo HOM05D003500 ORTHO05D003919 3.4e-11 73.2 142 34.5
Lj3g0003659 Lotus japonicus HOM05D003500 ORTHO05D003919 4.4e-11 72.8 187 31.6
THA.LOC104818564 Tarenaya hassleriana HOM05D003500 ORTHO05D003919 1.7e-10 70.9 209 33.5
HPP92_005532 Vanilla planifolia HOM05D003500 ORTHO05D003919 2.2e-10 70.5 130 34.6
ATR0051G010 Amborella trichopoda HOM05D003500 ORTHO05D003919 3.7e-10 69.7 134 35.8
PGR044G1892 Punica granatum HOM05D003500 ORTHO05D003919 6.4e-10 68.9 270 31.5
Hund25650 Selenicereus undatus HOM05D003500 ORTHO05D003919 1.4e-09 67.8 129 27.1
CANSAT35G1218 Cannabis sativa HOM05D003500 ORTHO05D003919 1.9e-09 67.4 223 30.9
Sopen08g021950 Solanum pennellii HOM05D003500 ORTHO05D003919 5.4e-09 65.9 149 32.2
Solyc08g068060.3 Solanum lycopersicum HOM05D003500 ORTHO05D003919 9.2e-09 65.1 149 32.2
PGSC0003DMG400014491 Solanum tuberosum HOM05D003500 ORTHO05D003919 9.2e-09 65.1 149 32.2
CAN.G886.10 Capsicum annuum HOM05D003500 ORTHO05D003919 2.1e-08 63.9 149 32.2
CARHR240660 Cardamine hirsuta HOM05D003500 ORTHO05D003919 2.7e-08 63.5 128 35.9
Nitab4.5_0002393g0050 Nicotiana tabacum HOM05D003500 ORTHO05D003919 2.7e-08 63.5 216 28.7
A08p18080 Brassica napus HOM05D003500 ORTHO05D003919 1.0e-07 61.6 128 33.6
BraA08t33760Z Brassica rapa HOM05D003500 ORTHO05D003919 1.3e-07 61.2 128 34.4
BcaB03g12755 Brassica carinata HOM05D003500 ORTHO05D003919 1.7e-07 60.8 128 34.4
Sp7g30440 Schrenkiella parvula HOM05D003500 ORTHO05D003919 2.3e-07 60.5 130 35.4
AL7G19060 Arabidopsis lyrata HOM05D003500 ORTHO05D003919 3.9e-07 59.7 128 34.4
BcaC09g52062 Brassica carinata HOM05D003500 ORTHO05D003919 8.6e-07 58.5 129 36.4
Zm00001eb366780 Zea mays HOM05D039918 ORTHO05D003919 8.6e-07 58.5 132 34.8
A01p05660 Brassica napus HOM05D003500 ORTHO05D003919 1.1e-06 58.2 129 36.4
BolC1t00621H Brassica oleracea HOM05D003500 ORTHO05D003919 1.1e-06 58.2 128 35.9
BraA01t00536Z Brassica rapa HOM05D003500 ORTHO05D003919 1.1e-06 58.2 129 36.4
unitig_32.g11118 Utricularia gibba HOM05D003500 ORTHO05D003919 2.5e-06 57.0 141 34.0
AT4G32680 Arabidopsis thaliana HOM05D003500 ORTHO05D003919 3.3e-06 56.6 128 33.6
BcaC01g01007 Brassica carinata HOM05D003500 ORTHO05D003919 3.3e-06 56.6 128 32.8
C01p06230 Brassica napus HOM05D003500 ORTHO05D003919 3.3e-06 56.6 129 35.7
AL7G19270 Arabidopsis lyrata HOM05D002156 ORTHO05D003919 4.3e-06 56.2 128 33.6
Sabra06G0191500 Salix brachista HOM05D003500 ORTHO05D003919 4.3e-06 56.2 81 43.2
ECA233G0641 Erigeron canadensis HOM05D003500 ORTHO05D003919 7.3e-06 55.5 137 26.3
Potri.006G244600 Populus trichocarpa HOM05D003500 ORTHO05D003919 7.3e-06 55.5 123 33.3
HanXRQChr17g0541731 Helianthus annuus HOM05D003500 ORTHO05D003919 9.5e-06 55.1 210 26.7


User provided reference genes

Program Settings