Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.01G239000 Carya illinoinensis HOM05D007609 ORTHO05D009539 1.1e-46 189.5 88 100.0
QL05p023464 Quercus lobata HOM05D007609 ORTHO05D009539 1.0e-23 113.2 91 67.0
QL10p054851 Quercus lobata HOM05D007609 ORTHO05D009539 1.4e-22 109.4 91 65.9
Dinv38045 Davidia involucrata HOM05D007609 ORTHO05D009539 8.8e-12 73.6 83 45.8
Hma1.2p1_0092F.1_g046650 Hydrangea macrophylla HOM05D007609 ORTHO05D009539 5.7e-11 70.9 90 45.6
Hma1.2p1_0018F.1_g013450 Hydrangea macrophylla HOM05D007609 ORTHO05D009539 6.3e-10 67.4 92 40.2
Eucgr.C01049 Eucalyptus grandis HOM05D007609 ORTHO05D009539 8.2e-10 67.0 81 43.2
Gohir.D06G060000 Gossypium hirsutum HOM05D007609 ORTHO05D009539 4.1e-09 64.7 52 48.1
Gorai.010G069800 Gossypium raimondii HOM05D007609 ORTHO05D009539 4.1e-09 64.7 52 48.1
TAR626G0143 Trochodendron aralioides HOM05D007609 ORTHO05D025968 4.1e-09 64.7 88 40.9
Potri.006G159300 Populus trichocarpa HOM05D007609 ORTHO05D009539 5.3e-09 64.3 88 43.2
CSS0012617 Camellia sinensis var. sinensis HOM05D007609 ORTHO05D009539 6.9e-09 63.9 87 42.5
Eucgr.C03849 Eucalyptus grandis HOM05D007609 ORTHO05D009539 6.9e-09 63.9 92 42.4
ECA232G3029 Erigeron canadensis HOM05D007609 ORTHO05D009539 1.2e-08 63.2 85 37.6
Gohir.A07G006801 Gossypium hirsutum HOM05D007609 ORTHO05D009539 1.5e-08 62.8 43 58.1
Sabra18G0066900 Salix brachista HOM05D007609 ORTHO05D009539 1.5e-08 62.8 82 45.1
Gorai.001G004700 Gossypium raimondii HOM05D007609 ORTHO05D009539 2.0e-08 62.4 44 56.8
CsaV3_1G030560 Cucumis sativus L. HOM05D007609 ORTHO05D009539 4.5e-08 61.2 82 42.7
Sed0020512 Sechium edule HOM05D007609 ORTHO05D009539 4.5e-08 61.2 82 39.0
Cpa.g.sc451.1 Carica papaya HOM05D007609 ORTHO05D009539 5.9e-08 60.8 28 78.6
Peaxi162Scf00207g00095 Petunia axillaris HOM05D007609 ORTHO05D009539 5.9e-08 60.8 83 38.6
Thecc.09G111700 Theobroma cacao HOM05D007609 ORTHO05D009539 5.9e-08 60.8 63 46.0
DCAR_023052 Daucus carota HOM05D007609 ORTHO05D009539 7.7e-08 60.5 65 47.7
Sc18g0001160 Simmondsia chinensis HOM05D007609 ORTHO05D009539 7.7e-08 60.5 30 70.0
Gohir.A06G061700 Gossypium hirsutum HOM05D007609 ORTHO05D009539 1.0e-07 60.1 52 46.2
Manes.16G116800 Manihot esculenta HOM05D007609 ORTHO05D009539 1.0e-07 60.1 82 43.9
Potri.018G078900 Populus trichocarpa HOM05D007609 ORTHO05D009539 1.0e-07 60.1 32 75.0
TAR383G0714 Trochodendron aralioides HOM05D007609 ORTHO05D009539 1.0e-07 60.1 87 40.2
Gohir.D07G005100 Gossypium hirsutum HOM05D007609 ORTHO05D009539 1.3e-07 59.7 44 54.5
AUR62011005 Chenopodium quinoa HOM05D007609 ORTHO05D009539 1.7e-07 59.3 57 47.4
SGA_v2.0_scaffold5G02584 Striga asiatica HOM05D007609 ORTHO05D009539 1.7e-07 59.3 84 42.9
Glyma.07G087100 Glycine max HOM05D007609 ORTHO05D009539 2.2e-07 58.9 34 58.8
Lsat_1_v5_gn_4_103641 Lactuca sativa HOM05D007609 ORTHO05D009539 2.9e-07 58.5 30 70.0
Lj2g0010717 Lotus japonicus HOM05D007609 ORTHO05D009539 2.9e-07 58.5 83 38.6
Peaxi162Scf00015g00416 Petunia axillaris HOM05D007609 ORTHO05D009539 2.9e-07 58.5 75 44.0
vmacro18908 Vaccinium macrocarpon HOM05D007609 ORTHO05D009539 2.9e-07 58.5 35 68.6
Atru.chr1.3276 Acer truncatum HOM05D007609 ORTHO05D009539 3.8e-07 58.2 93 38.7
Sed0019634 Sechium edule HOM05D007609 ORTHO05D009539 3.8e-07 58.2 73 43.8
COL.COLO4_34908 Corchorus olitorius HOM05D007609 ORTHO05D009539 8.5e-07 57.0 28 71.4
Lalb_Chr22g0352851 Lupinus albus HOM05D007609 ORTHO05D009539 1.4e-06 56.2 33 60.6
Aqoxy7G01699 Aquilegia oxysepala HOM05D007609 ORTHO05D009539 1.9e-06 55.8 33 69.7
Lalb_Chr05g0222821 Lupinus albus HOM05D007609 ORTHO05D009539 1.9e-06 55.8 30 63.3
Ah.14g081870 Amaranthus hybridus HOM05D007609 ORTHO05D009539 2.5e-06 55.5 29 65.5
Ciclev10010038m.g Citrus clementina HOM05D007609 ORTHO05D009539 2.5e-06 55.5 49 49.0
Nn2g11764 Nelumbo nucifera HOM05D007609 ORTHO05D009539 2.5e-06 55.5 92 39.1
Nitab4.5_0000351g0200 Nicotiana tabacum HOM05D007609 ORTHO05D009539 2.5e-06 55.5 87 35.6
Migut.D01028 Erythranthe guttata HOM05D007609 ORTHO05D009539 3.2e-06 55.1 86 39.5
Eucgr.F03018 Eucalyptus grandis HOM05D007609 ORTHO05D009539 3.2e-06 55.1 89 36.0
Gohir.A08G241000 Gossypium hirsutum HOM05D007609 ORTHO05D009539 3.2e-06 55.1 52 48.1
Gohir.D08G261700 Gossypium hirsutum HOM05D007609 ORTHO05D009539 3.2e-06 55.1 52 48.1
Gorai.004G279800 Gossypium raimondii HOM05D007609 ORTHO05D009539 3.2e-06 55.1 52 48.1
HanXRQChr10g0317871 Helianthus annuus HOM05D007609 ORTHO05D009539 3.2e-06 55.1 30 70.0
Sed0016972 Sechium edule HOM05D007609 ORTHO05D009539 3.2e-06 55.1 42 52.4
Zm00001eb369910 Zea mays HOM05D026810 ORTHO05D025968 3.2e-06 55.1 39 61.5
CARHR042480 Cardamine hirsuta HOM05D010933 ORTHO05D013136 4.2e-06 54.7 79 35.4
Ca_25525_v3 Cicer arietinum L. HOM05D007609 ORTHO05D009539 4.2e-06 54.7 35 60.0
AUR62021516 Chenopodium quinoa HOM05D007609 ORTHO05D009539 5.5e-06 54.3 58 44.8
Phvul.004G162600 Phaseolus vulgaris HOM05D007609 ORTHO05D009539 5.5e-06 54.3 33 57.6
Solyc06g066700.1 Solanum lycopersicum HOM05D007609 ORTHO05D009539 5.5e-06 54.3 60 41.7
AL1G60560 Arabidopsis lyrata HOM05D010933 ORTHO05D013136 7.2e-06 53.9 51 43.1
ATR0559G294 Amborella trichopoda HOM05D007609 ORTHO05D009539 9.4e-06 53.5 30 66.7
Medtr6g086445 Medicago truncatula HOM05D007609 ORTHO05D009539 9.4e-06 53.5 28 67.9
Sp1g38930 Schrenkiella parvula HOM05D010933 ORTHO05D013136 9.4e-06 53.5 49 53.1
PGSC0003DMG400005605 Solanum tuberosum HOM05D007609 ORTHO05D009539 9.4e-06 53.5 31 67.7
VMungo0464G1934 Vigna mungo HOM05D007609 ORTHO05D009539 9.4e-06 53.5 33 57.6


User provided reference genes

Program Settings