Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.01G235200 Carya illinoinensis HOM05D005761 ORTHO05D007286 2.0e-86 322.4 159 100.0
QL05p021523 Quercus lobata HOM05D005761 ORTHO05D007286 7.7e-75 283.9 158 85.4
Haze_16351 Corylus avellana HOM05D005761 ORTHO05D007286 6.5e-74 280.8 159 84.9
Cfa014791 Carpinus fangiana HOM05D005761 ORTHO05D007286 5.5e-73 277.7 159 85.5
CSS0019454 Camellia sinensis var. sinensis HOM05D005761 ORTHO05D007286 7.2e-73 277.3 160 84.4
CSS0045926 Camellia sinensis var. sinensis HOM05D005761 ORTHO05D007286 7.2e-73 277.3 160 84.4
Duzib192G1004 Durio zibethinus HOM05D005761 ORTHO05D007286 3.6e-72 275.0 160 85.6
Eucgr.F03043 Eucalyptus grandis HOM05D005761 ORTHO05D007286 4.7e-72 274.6 160 84.4
Thecc.06G093100 Theobroma cacao HOM05D005761 ORTHO05D007286 3.0e-71 271.9 160 84.4
RcHm_v2.0_Chr2g0139151 Rosa chinensis HOM05D005761 ORTHO05D007286 4.0e-71 271.6 160 81.9
Cfa002100 Carpinus fangiana HOM05D005761 ORTHO05D001133 5.2e-71 271.2 159 83.6
Dinv38013 Davidia involucrata HOM05D005761 ORTHO05D007286 6.8e-71 270.8 155 85.2
TWI12G1054 Tripterygium wilfordii HOM05D005761 ORTHO05D007286 6.8e-71 270.8 159 81.1
CAN.G438.30 Capsicum annuum HOM05D005761 ORTHO05D007286 8.8e-71 270.4 159 81.8
Hma1.2p1_1195F.1_g265890 Hydrangea macrophylla HOM05D005761 ORTHO05D007286 8.8e-71 270.4 160 83.1
vmacro18882 Vaccinium macrocarpon HOM05D005761 ORTHO05D007286 1.5e-70 269.6 159 81.1
Gorai.011G073900 Gossypium raimondii HOM05D005761 ORTHO05D007286 2.0e-70 269.2 159 83.0
Prupe.6G357100 Prunus persica HOM05D005761 ORTHO05D007286 2.0e-70 269.2 160 83.1
Gohir.D10G069650 Gossypium hirsutum HOM05D005761 ORTHO05D007286 2.6e-70 268.9 159 83.0
TWI75G0371 Tripterygium wilfordii HOM05D005761 ORTHO05D007286 3.4e-70 268.5 159 81.8
arahy.Tifrunner.gnm1.ann1.QAD112 Arachis hypogaea HOM05D005761 ORTHO05D007286 5.7e-70 267.7 160 80.6
arahy.Tifrunner.gnm1.ann1.IDML3X Arachis hypogaea HOM05D005761 ORTHO05D007286 7.5e-70 267.3 160 80.6
Potri.003G052000 Populus trichocarpa HOM05D005761 ORTHO05D007286 7.5e-70 267.3 156 80.8
CsaV3_3G005910 Cucumis sativus L. HOM05D005761 ORTHO05D007286 9.8e-70 266.9 159 79.9
Gohir.A10G081800 Gossypium hirsutum HOM05D005761 ORTHO05D007286 9.8e-70 266.9 159 81.8
Solyc03g120610.3 Solanum lycopersicum HOM05D005761 ORTHO05D007286 9.8e-70 266.9 154 83.1
Sopen00g008190 Solanum pennellii HOM05D005761 ORTHO05D007286 9.8e-70 266.9 154 83.1
Cc04_g07670 Coffea canephora HOM05D005761 ORTHO05D007286 1.3e-69 266.5 160 80.6
Rhsim08G0224400 Rhododendron simsii HOM05D005761 ORTHO05D007286 1.3e-69 266.5 160 81.2
PGSC0003DMG401002548 Solanum tuberosum HOM05D005761 ORTHO05D007286 2.2e-69 265.8 154 83.1
COL.COLO4_30441 Corchorus olitorius HOM05D005761 ORTHO05D007286 3.7e-69 265.0 160 82.5
MELO3C016564.2 Cucumis melo HOM05D005761 ORTHO05D007286 3.7e-69 265.0 155 81.3
Gohir.D05G131700 Gossypium hirsutum HOM05D005761 ORTHO05D007286 3.7e-69 265.0 158 83.5
Gorai.009G135400 Gossypium raimondii HOM05D005761 ORTHO05D007286 3.7e-69 265.0 158 83.5
FvH4_6g31840 Fragaria vesca HOM05D005761 ORTHO05D007286 4.8e-69 264.6 157 80.9
FAN14G3194 Fragaria x ananassa HOM05D005761 ORTHO05D007286 4.8e-69 264.6 157 80.9
Lj3g0012819 Lotus japonicus HOM05D005761 ORTHO05D007286 4.8e-69 264.6 160 81.9
FAN09G1691 Fragaria x ananassa HOM05D005761 ORTHO05D007286 6.3e-69 264.2 156 80.8
Glyma.08G204400 Glycine max HOM05D005761 ORTHO05D007286 6.3e-69 264.2 160 80.6
Phvul.010G148400 Phaseolus vulgaris HOM05D005761 ORTHO05D007286 6.3e-69 264.2 155 84.5
Gohir.A05G132200 Gossypium hirsutum HOM05D005761 ORTHO05D007286 1.1e-68 263.5 158 82.9
Atru.chr5.1303 Acer truncatum HOM05D005761 ORTHO05D007286 1.8e-68 262.7 160 81.2
Ca_06670_v3 Cicer arietinum L. HOM05D005761 ORTHO05D007286 1.8e-68 262.7 165 79.4
Cpa.g.sc33.106 Carica papaya HOM05D005761 ORTHO05D007286 2.4e-68 262.3 155 81.3
Lj9C509G5 Lonicera japonica HOM05D003521 ORTHO05D000476 2.4e-68 262.3 161 80.7
Sed0000486 Sechium edule HOM05D005761 ORTHO05D007286 2.4e-68 262.3 159 78.6
MD17G1190700 Malus domestica HOM05D005761 ORTHO05D007286 4.1e-68 261.5 159 79.2
Manes.04G130300 Manihot esculenta HOM05D005761 ORTHO05D007286 4.1e-68 261.5 156 80.8
Psat2g181000 Pisum sativum HOM05D005761 ORTHO05D007286 4.1e-68 261.5 165 78.8
ClCG09G001920 Citrullus lanatus HOM05D005761 ORTHO05D007286 5.4e-68 261.2 153 81.0
Atru.chr5.1334 Acer truncatum HOM05D005761 ORTHO05D007286 7.0e-68 260.8 158 81.0
Ciclev10022630m.g Citrus clementina HOM05D005761 ORTHO05D007286 7.0e-68 260.8 160 78.8
VMungo0464G1667 Vigna mungo HOM05D005761 ORTHO05D007286 7.0e-68 260.8 155 81.9
FAN05G4602 Fragaria x ananassa HOM05D005761 ORTHO05D007286 2.7e-67 258.8 156 79.5
DCAR_023065 Daucus carota HOM05D005761 ORTHO05D007286 3.5e-67 258.5 161 78.3
EL10Ac9g22057 Beta vulgaris HOM05D005761 ORTHO05D007286 5.9e-67 257.7 155 81.9
PSO063G2446 Papaver somniferum HOM05D005761 ORTHO05D007286 5.9e-67 257.7 152 81.6
THA.LOC104813554 Tarenaya hassleriana HOM05D005761 ORTHO05D007286 7.7e-67 257.3 155 79.4
Migut.I00937 Erythranthe guttata HOM05D005761 ORTHO05D007286 1.0e-66 256.9 155 78.1
Lj5A57G74 Lonicera japonica HOM05D005761 ORTHO05D007286 1.0e-66 256.9 158 78.5
PSO170G4248 Papaver somniferum HOM05D005761 ORTHO05D007286 1.0e-66 256.9 152 80.9
Sabra01G0154700 Salix brachista HOM05D005761 ORTHO05D007286 1.3e-66 256.5 157 80.3
GSVIVG01017058001 Vitis vinifera HOM05D005761 ORTHO05D007286 5.0e-66 254.6 160 74.4
Sc12g0009490 Simmondsia chinensis HOM05D005761 ORTHO05D007286 6.5e-66 254.2 155 79.4
unitig_37.g12255 Utricularia gibba HOM05D005761 ORTHO05D007286 6.5e-66 254.2 154 79.2
Lalb_Chr25g0280001 Lupinus albus HOM05D005761 ORTHO05D007286 2.5e-65 252.3 156 77.6
Nn2g11672 Nelumbo nucifera HOM05D005761 ORTHO05D007286 2.5e-65 252.3 152 79.6
SGA_v2.0_scaffold80G25854 Striga asiatica HOM05D005761 ORTHO05D007286 2.5e-65 252.3 159 79.2
Cpa.g.sc37.42 Carica papaya HOM05D005761 ORTHO05D007286 3.2e-65 251.9 161 77.0
DCAR_016208 Daucus carota HOM05D005761 ORTHO05D007286 4.2e-65 251.5 159 74.8
TPR.G19588 Trifolium pratense HOM05D005761 ORTHO05D007286 5.5e-65 251.1 180 72.2
Nitab4.5_0001315g0120 Nicotiana tabacum HOM05D005761 ORTHO05D007286 9.4e-65 250.4 155 80.0
Ah.01g005570 Amaranthus hybridus HOM05D005761 ORTHO05D001133 1.2e-64 250.0 179 69.3
SGA_v2.0_scaffold5G02550 Striga asiatica HOM05D005761 ORTHO05D007286 1.2e-64 250.0 159 78.6
Nn3g18106 Nelumbo nucifera HOM05D005761 ORTHO05D007286 1.6e-64 249.6 153 78.4
PGR102G2101 Punica granatum HOM05D005761 ORTHO05D007286 1.6e-64 249.6 163 73.0
HanXRQChr09g0275451 Helianthus annuus HOM05D005761 ORTHO05D007286 2.1e-64 249.2 157 73.2
Oeu000460.1 Olea europaea HOM05D005761 ORTHO05D007286 2.1e-64 249.2 155 76.8
Peaxi162Scf00015g00136 Petunia axillaris HOM05D005761 ORTHO05D007286 4.7e-64 248.1 155 79.4
AUR62016504 Chenopodium quinoa HOM05D005761 ORTHO05D007286 6.1e-64 247.7 155 79.4
Lsat_1_v5_gn_4_103261 Lactuca sativa HOM05D005761 ORTHO05D007286 8.0e-64 247.3 160 72.5
Nitab4.5_0007217g0020 Nicotiana tabacum HOM05D005761 ORTHO05D007286 1.0e-63 246.9 141 85.1
RcHm_v2.0_Chr2g0139101 Rosa chinensis HOM05D005761 ORTHO05D007286 1.0e-63 246.9 159 76.7
ClCG10G006430 Citrullus lanatus HOM05D005761 ORTHO05D007286 1.4e-63 246.5 159 76.7
Medtr5g011180 Medicago truncatula HOM05D005761 ORTHO05D007286 1.4e-63 246.5 165 73.3
MSTRG.22659 Avicennia marina HOM05D005761 ORTHO05D007286 2.3e-63 245.7 154 76.6
Nitab4.5_0006311g0030 Nicotiana tabacum HOM05D005761 ORTHO05D007286 2.3e-63 245.7 159 77.4
Zm00001eb237310 Zea mays HOM05D005761 ORTHO05D007286 3.0e-63 245.4 159 75.5
PGR102G0188 Punica granatum HOM05D005761 ORTHO05D007286 4.0e-63 245.0 163 72.4
Rhsim09G0202300 Rhododendron simsii HOM05D005761 ORTHO05D007286 1.5e-62 243.0 160 75.6
CDE05G3104 Ceratophyllum demersum HOM05D005761 ORTHO05D007286 4.4e-62 241.5 147 76.9
Oeu059462.1 Olea europaea HOM05D005761 ORTHO05D007286 4.4e-62 241.5 177 68.9
TAR624G1072 Trochodendron aralioides HOM05D005761 ORTHO05D007286 1.3e-61 240.0 152 76.3
Aa31LG5G21060 Aethionema arabicum HOM05D000113 ORTHO05D001108 3.7e-61 238.4 157 74.5
MBI01_g30861_MAGBIO Magnolia biondii HOM05D005761 ORTHO05D007286 3.7e-61 238.4 142 79.6
ECA232G2351 Erigeron canadensis HOM05D005761 ORTHO05D007286 4.9e-61 238.0 157 68.8
Os02g0275100 Oryza sativa ssp. japonica HOM05D005761 ORTHO05D007286 5.4e-60 234.6 141 79.4
ATR0315G131 Amborella trichopoda HOM05D005761 ORTHO05D007286 1.2e-59 233.4 140 77.1
Peaxi162Scf00029g02413 Petunia axillaris HOM05D005761 ORTHO05D007286 5.9e-59 231.1 160 74.4
HPP92_024576 Vanilla planifolia HOM05D005761 ORTHO05D007286 5.9e-59 231.1 150 74.0
Sp1g13540 Schrenkiella parvula HOM05D005761 ORTHO05D007286 1.0e-55 220.3 156 69.2
Thhalv10008971m.g Eutrema salsugineum HOM05D005761 ORTHO05D007286 2.3e-55 219.2 156 69.9
Carub.0001s1498 Capsella rubella HOM05D005761 ORTHO05D007286 3.0e-55 218.8 157 69.4
BcaC07g38774 Brassica carinata HOM05D005761 ORTHO05D007286 4.0e-55 218.4 146 70.5
BcaB03g13070 Brassica carinata HOM05D005761 ORTHO05D007286 2.0e-54 216.1 156 67.9
CARHR015750 Cardamine hirsuta HOM05D005761 ORTHO05D007286 3.4e-54 215.3 156 67.3
A06p11220 Brassica napus HOM05D005761 ORTHO05D007286 5.7e-54 214.5 156 67.9
BraA06t24302Z Brassica rapa HOM05D005761 ORTHO05D007286 5.7e-54 214.5 156 67.9
C05p13350 Brassica napus HOM05D005761 ORTHO05D007286 7.5e-54 214.2 141 72.3
BolC5t30072H Brassica oleracea HOM05D005761 ORTHO05D007286 1.7e-53 213.0 141 71.6
CANSAT56G0921 Cannabis sativa HOM05D005761 ORTHO05D007286 2.9e-53 212.2 158 67.1
AL1G27310 Arabidopsis lyrata HOM05D005761 ORTHO05D007286 6.3e-53 211.1 156 67.3
A08p31680 Brassica napus HOM05D005761 ORTHO05D007286 1.4e-52 209.9 156 66.7
BraA08t35090Z Brassica rapa HOM05D005761 ORTHO05D007286 1.4e-52 209.9 156 66.7
C08p17060 Brassica napus HOM05D000103 ORTHO05D000049 1.8e-52 209.5 156 66.0
BolC8t49332H Brassica oleracea HOM05D005761 ORTHO05D007286 1.8e-52 209.5 156 66.0
Duzib160G0104 Durio zibethinus HOM05D005761 ORTHO05D007286 3.2e-52 208.8 155 71.6
SHI11001 Sapria himalayana HOM05D005761 ORTHO05D007286 7.0e-52 207.6 152 64.5
AT1G15220 Arabidopsis thaliana HOM05D005761 ORTHO05D007286 1.2e-51 206.8 156 66.0
TAR636G0897 Trochodendron aralioides HOM05D005761 ORTHO05D007286 5.9e-51 204.5 132 73.5
SalBow2G2609 Salvia bowleyana HOM05D005761 ORTHO05D007286 1.7e-50 203.0 200 54.0
Cfa014792 Carpinus fangiana HOM05D005761 ORTHO05D007286 1.5e-49 199.9 112 83.0
Actinidia32723 Actinidia chinensis HOM05D005761 ORTHO05D007286 2.8e-48 195.7 125 73.6
SEGI_40479 Sequoiadendron giganteum HOM05D005761 ORTHO05D007286 6.0e-43 177.9 120 66.7
BcaC05g25451 Brassica carinata HOM05D005761 ORTHO05D007286 1.3e-37 160.2 119 67.2
Glyma.07G019200 Glycine max HOM05D005761 ORTHO05D007286 6.4e-37 157.9 93 81.7
Pp3c3_29950 Physcomitrium patens HOM05D005761 ORTHO05D007286 5.4e-36 154.8 142 54.9
Mapoly0033s0089 Marchantia polymorpha HOM05D005761 ORTHO05D007286 6.0e-35 151.4 142 51.4
HanXRQChr05g0136521 Helianthus annuus HOM05D005761 ORTHO05D007286 6.6e-34 147.9 93 74.2
Sed0020064 Sechium edule HOM05D005761 ORTHO05D007286 2.0e-30 136.3 98 69.4
HanXRQChr10g0301331 Helianthus annuus HOM05D005761 ORTHO05D007286 2.2e-29 132.9 87 72.4
Sopen03g039470 Solanum pennellii HOM05D005761 ORTHO05D007286 1.4e-28 130.2 72 79.2
CBR_g32010 Chara braunii HOM05D005761 ORTHO05D007286 5.1e-26 121.7 142 45.1
HanXRQChr11g0333491 Helianthus annuus HOM05D005761 ORTHO05D007286 5.8e-22 108.2 124 46.0
HanXRQChr08g0232791 Helianthus annuus HOM05D005761 ORTHO05D007286 1.2e-19 100.5 124 42.7
Rhsim08G0224100 Rhododendron simsii HOM05D000414 ORTHO05D000276 7.6e-14 81.3 50 78.0
Rhsim08G0203300 Rhododendron simsii HOM05D005761 ORTHO05D007286 2.9e-13 79.3 48 75.0


User provided reference genes

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