Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.01G234300 Carya illinoinensis HOM05D004680 ORTHO05D005939 8.9e-178 626.7 293 100.0
QL05p021321 Quercus lobata HOM05D004680 ORTHO05D005939 3.5e-166 588.2 291 92.1
Cfa002107 Carpinus fangiana HOM05D004680 ORTHO05D005939 3.6e-163 578.2 289 90.7
CiPaw.02G147900 Carya illinoinensis HOM05D004680 ORTHO05D005939 1.8e-162 575.9 289 90.7
Medtr2g101480 Medicago truncatula HOM05D004680 ORTHO05D005939 4.5e-161 571.2 290 88.6
FvH4_6g31940 Fragaria vesca HOM05D004680 ORTHO05D005939 5.8e-161 570.9 290 90.0
FAN09G3354 Fragaria x ananassa HOM05D004680 ORTHO05D005939 7.6e-161 570.5 290 89.3
Glyma.13G356500 Glycine max HOM05D004680 ORTHO05D005939 1.3e-160 569.7 288 88.5
TPR.G37217 Trifolium pratense HOM05D004680 ORTHO05D005939 1.3e-160 569.7 290 88.3
Psat5g297320 Pisum sativum HOM05D004680 ORTHO05D005939 1.7e-160 569.3 290 88.3
FAN05G4921 Fragaria x ananassa HOM05D004680 ORTHO05D005939 2.2e-160 568.9 289 90.0
RcHm_v2.0_Chr2g0139361 Rosa chinensis HOM05D004680 ORTHO05D005939 2.2e-160 568.9 290 89.3
Glyma.15G017600 Glycine max HOM05D004680 ORTHO05D005939 2.9e-160 568.5 290 87.6
Dinv30468 Davidia involucrata HOM05D004680 ORTHO05D005939 4.9e-160 567.8 291 87.3
Lj3g0026249 Lotus japonicus HOM05D004680 ORTHO05D005939 4.9e-160 567.8 290 87.6
Ca_01140_v3 Cicer arietinum L. HOM05D004680 ORTHO05D005939 6.4e-160 567.4 290 87.2
FAN14G5860 Fragaria x ananassa HOM05D004680 ORTHO05D005939 6.4e-160 567.4 290 89.0
Ciclev10025565m.g Citrus clementina HOM05D004680 ORTHO05D005939 1.1e-159 566.6 291 86.9
Gorai.009G136000 Gossypium raimondii HOM05D004680 ORTHO05D005939 1.9e-159 565.8 291 87.3
Nitab4.5_0000351g0010 Nicotiana tabacum HOM05D004680 ORTHO05D005939 1.9e-159 565.8 290 86.6
TAR383G0102 Trochodendron aralioides HOM05D004680 ORTHO05D005939 1.9e-159 565.8 289 87.9
Manes.11G036700 Manihot esculenta HOM05D004680 ORTHO05D005939 2.4e-159 565.5 291 87.3
Nitab4.5_0009963g0010 Nicotiana tabacum HOM05D004680 ORTHO05D005939 2.4e-159 565.5 290 87.2
Phvul.005G169700 Phaseolus vulgaris HOM05D004680 ORTHO05D005939 4.2e-159 564.7 289 87.9
Peaxi162Scf00015g00135 Petunia axillaris HOM05D004680 ORTHO05D005939 5.4e-159 564.3 290 86.9
Sabra01G0153900 Salix brachista HOM05D004680 ORTHO05D005939 7.1e-159 563.9 291 87.3
TWI75G1773 Tripterygium wilfordii HOM05D004680 ORTHO05D005939 7.1e-159 563.9 291 87.6
ClCG07G013200 Citrullus lanatus HOM05D004680 ORTHO05D005939 1.2e-158 563.1 290 88.6
Gohir.A05G127800 Gossypium hirsutum HOM05D004680 ORTHO05D005939 1.2e-158 563.1 291 86.9
PGR102G2014 Punica granatum HOM05D004680 ORTHO05D005939 1.6e-158 562.8 289 86.9
Lalb_Chr22g0351431 Lupinus albus HOM05D004680 ORTHO05D005939 2.1e-158 562.4 290 86.9
Rhsim08G0225100 Rhododendron simsii HOM05D004680 ORTHO05D005939 2.7e-158 562.0 291 86.6
VMungo1080G0622 Vigna mungo HOM05D004680 ORTHO05D005939 2.7e-158 562.0 290 87.2
Sed0009248 Sechium edule HOM05D004680 ORTHO05D005939 3.5e-158 561.6 290 87.2
Eucgr.F03051 Eucalyptus grandis HOM05D004680 ORTHO05D005939 4.6e-158 561.2 290 86.6
THA.LOC104817975 Tarenaya hassleriana HOM05D004680 ORTHO05D005939 6.0e-158 560.8 289 87.2
CSS0028346 Camellia sinensis var. sinensis HOM05D004680 ORTHO05D005939 7.9e-158 560.5 290 86.9
CANSAT56G3143 Cannabis sativa HOM05D004680 ORTHO05D005939 7.9e-158 560.5 290 87.2
Lalb_Chr14g0373141 Lupinus albus HOM05D004680 ORTHO05D005939 1.3e-157 559.7 290 86.2
Sc12g0009530 Simmondsia chinensis HOM05D004680 ORTHO05D005939 1.3e-157 559.7 289 86.5
QL11p016400 Quercus lobata HOM05D004680 ORTHO05D005939 1.8e-157 559.3 290 87.9
Gorai.011G073000 Gossypium raimondii HOM05D004680 ORTHO05D005939 2.3e-157 558.9 291 86.3
vmacro18875 Vaccinium macrocarpon HOM05D004680 ORTHO05D005939 2.3e-157 558.9 291 86.3
CsaV3_3G023810 Cucumis sativus L. HOM05D004680 ORTHO05D005939 3.0e-157 558.5 290 88.3
Gohir.D10G069100 Gossypium hirsutum HOM05D004680 ORTHO05D005939 3.0e-157 558.5 291 86.3
THA.LOC104815523 Tarenaya hassleriana HOM05D004680 ORTHO05D005939 3.0e-157 558.5 289 87.5
Cpa.g.sc109.43 Carica papaya HOM05D004680 ORTHO05D005939 3.9e-157 558.1 291 85.9
HanXRQChr02g0032341 Helianthus annuus HOM05D004680 ORTHO05D005939 3.9e-157 558.1 291 84.5
Nn2g11656 Nelumbo nucifera HOM05D004680 ORTHO05D005939 6.7e-157 557.4 289 86.9
TWI12G0154 Tripterygium wilfordii HOM05D004680 ORTHO05D005939 6.7e-157 557.4 289 87.2
Cc04_g02880 Coffea canephora HOM05D004680 ORTHO05D005939 8.7e-157 557.0 291 85.6
Duzib192G0285 Durio zibethinus HOM05D004680 ORTHO05D005939 8.7e-157 557.0 291 86.9
Hma1.2p1_1262F.1_g271230 Hydrangea macrophylla HOM05D004680 ORTHO05D005939 8.7e-157 557.0 291 86.3
arahy.Tifrunner.gnm1.ann1.0TRA3C Arachis hypogaea HOM05D004680 ORTHO05D005939 1.1e-156 556.6 289 85.5
arahy.Tifrunner.gnm1.ann1.I8Y04W Arachis hypogaea HOM05D004680 ORTHO05D005939 1.1e-156 556.6 289 85.5
Gohir.A10G067300 Gossypium hirsutum HOM05D004680 ORTHO05D005939 1.1e-156 556.6 291 86.9
Thecc.06G095100 Theobroma cacao HOM05D004680 ORTHO05D005939 1.1e-156 556.6 291 86.6
Nitab4.5_0011578g0010 Nicotiana tabacum HOM05D004680 ORTHO05D005939 1.5e-156 556.2 288 85.8
Nitab4.5_0006985g0040 Nicotiana tabacum HOM05D004680 ORTHO05D005939 1.9e-156 555.8 286 86.4
Potri.003G051200 Populus trichocarpa HOM05D004680 ORTHO05D005939 2.5e-156 555.4 291 85.6
GSVIVG01017045001 Vitis vinifera HOM05D004680 ORTHO05D005939 2.5e-156 555.4 291 86.6
MD09G1207900 Malus domestica HOM05D004680 ORTHO05D005939 3.3e-156 555.1 290 85.5
Migut.D01009 Erythranthe guttata HOM05D004680 ORTHO05D005939 4.3e-156 554.7 291 84.5
CSS0039709 Camellia sinensis var. sinensis HOM05D004680 ORTHO05D005939 7.4e-156 553.9 291 84.9
Duzib235G0372 Durio zibethinus HOM05D004680 ORTHO05D005939 7.4e-156 553.9 291 86.6
PSO566G0328 Papaver somniferum HOM05D004680 ORTHO05D005939 7.4e-156 553.9 288 84.4
AL3G28890 Arabidopsis lyrata HOM05D004680 ORTHO05D005939 9.6e-156 553.5 289 85.1
MELO3C012983.2 Cucumis melo HOM05D004680 ORTHO05D005939 9.6e-156 553.5 290 87.2
Peaxi162Scf00207g01238 Petunia axillaris HOM05D004680 ORTHO05D005939 9.6e-156 553.5 282 87.9
Hund06644 Selenicereus undatus HOM05D004680 ORTHO05D005939 2.1e-155 552.4 288 85.1
SGA_v2.0_scaffold69G23355 Striga asiatica HOM05D004680 ORTHO05D005939 2.1e-155 552.4 291 84.2
MSTRG.9470 Avicennia marina HOM05D004680 ORTHO05D005939 3.7e-155 551.6 290 85.2
Carub.0003s1595 Capsella rubella HOM05D004680 ORTHO05D005939 3.7e-155 551.6 289 84.8
MSTRG.22656 Avicennia marina HOM05D004680 ORTHO05D005939 4.8e-155 551.2 291 84.2
BcaC09g48589 Brassica carinata HOM05D004680 ORTHO05D005939 4.8e-155 551.2 289 85.5
Prupe.3G064100 Prunus persica HOM05D004680 ORTHO05D005939 4.8e-155 551.2 291 85.2
Potri.001G186200 Populus trichocarpa HOM05D004680 ORTHO05D005939 6.2e-155 550.8 291 85.2
Migut.I00930 Erythranthe guttata HOM05D004680 ORTHO05D005939 8.1e-155 550.4 291 83.5
Sabra03G0027900 Salix brachista HOM05D004680 ORTHO05D005939 8.1e-155 550.4 291 84.9
ATR0315G163 Amborella trichopoda HOM05D004680 ORTHO05D005939 1.1e-154 550.1 291 84.2
DCAR_023071 Daucus carota HOM05D004680 ORTHO05D005939 1.1e-154 550.1 289 84.4
Solyc03g120490.3 Solanum lycopersicum HOM05D004680 ORTHO05D005939 1.1e-154 550.1 290 84.8
Sopen03g039370 Solanum pennellii HOM05D004680 ORTHO05D005939 1.1e-154 550.1 290 84.8
Atru.BG.177.p Acer truncatum HOM05D004680 ORTHO05D005939 1.4e-154 549.7 288 86.5
AT3G16200 Arabidopsis thaliana HOM05D004680 ORTHO05D005939 1.4e-154 549.7 289 84.1
PSO782G2876 Papaver somniferum HOM05D004680 ORTHO05D005939 1.4e-154 549.7 288 83.7
AUR62031868 Chenopodium quinoa HOM05D004680 ORTHO05D005939 1.8e-154 549.3 291 84.5
Thhalv10020703m.g Eutrema salsugineum HOM05D004680 ORTHO05D005939 1.8e-154 549.3 289 85.1
Nn3g18134 Nelumbo nucifera HOM05D004680 ORTHO05D005939 1.8e-154 549.3 289 85.5
EL10Ac9g22049 Beta vulgaris HOM05D004680 ORTHO05D005939 4.0e-154 548.1 291 84.2
MBI04_g14933_MAGBIO Magnolia biondii HOM05D004680 ORTHO05D005939 4.0e-154 548.1 288 86.5
SalBow2G2497 Salvia bowleyana HOM05D004680 ORTHO05D005939 1.2e-153 546.6 291 82.5
Lsat_1_v5_gn_1_34800 Lactuca sativa HOM05D004680 ORTHO05D005939 1.5e-153 546.2 283 84.8
Lalb_Chr24g0395991 Lupinus albus HOM05D004680 ORTHO05D005939 2.0e-153 545.8 288 84.4
MD17G1189000 Malus domestica HOM05D004680 ORTHO05D005939 2.0e-153 545.8 290 84.8
Sp3g14570 Schrenkiella parvula HOM05D004680 ORTHO05D005939 2.0e-153 545.8 289 84.1
PGSC0003DMG400002632 Solanum tuberosum HOM05D004680 ORTHO05D005939 2.0e-153 545.8 290 84.1
C05p50300 Brassica napus HOM05D004680 ORTHO05D005939 2.6e-153 545.4 290 85.2
BolC1t04776H Brassica oleracea HOM05D004680 ORTHO05D005939 2.6e-153 545.4 290 84.8
CARHR091390 Cardamine hirsuta HOM05D004680 ORTHO05D005939 2.6e-153 545.4 288 83.7
Aqoxy7G01528 Aquilegia oxysepala HOM05D004680 ORTHO05D005939 3.4e-153 545.0 289 83.7
Ah.01g021760 Amaranthus hybridus HOM05D004680 ORTHO05D005939 4.5e-153 544.7 291 82.8
A01p37900 Brassica napus HOM05D004680 ORTHO05D005939 5.8e-153 544.3 290 84.5
BraA01t03850Z Brassica rapa HOM05D004680 ORTHO05D005939 5.8e-153 544.3 290 84.5
BraA05t22155Z Brassica rapa HOM05D004680 ORTHO05D005939 7.6e-153 543.9 290 84.8
A05p33300 Brassica napus HOM05D004680 ORTHO05D005939 1.3e-152 543.1 290 84.8
C01p48080 Brassica napus HOM05D004680 ORTHO05D005939 1.3e-152 543.1 290 84.5
Sed0024237 Sechium edule HOM05D004680 ORTHO05D005939 2.2e-152 542.3 290 85.9
AUR62016515 Chenopodium quinoa HOM05D004680 ORTHO05D005939 2.9e-152 542.0 291 83.2
Lsat_1_v5_gn_4_101400 Lactuca sativa HOM05D004680 ORTHO05D005939 6.4e-152 540.8 293 82.3
ECA247G0440 Erigeron canadensis HOM05D004680 ORTHO05D005939 8.4e-152 540.4 281 86.1
SalBow7G2677 Salvia bowleyana HOM05D004680 ORTHO05D005939 8.4e-152 540.4 286 83.6
CDE02G3046 Ceratophyllum demersum HOM05D004680 ORTHO05D005939 3.2e-151 538.5 283 84.5
SGA_v2.0_scaffold4G02014 Striga asiatica HOM05D004680 ORTHO05D005939 5.5e-151 537.7 286 83.6
BolC5t33780H Brassica oleracea HOM05D004680 ORTHO05D005939 1.0e-149 533.5 285 84.6
SHI25904 Sapria himalayana HOM05D004680 ORTHO05D005939 9.6e-148 526.9 287 80.8
Aa31LG8G3340 Aethionema arabicum HOM05D004680 ORTHO05D005939 1.8e-146 522.7 282 81.2
Oeu050619.1 Olea europaea HOM05D004680 ORTHO05D005939 1.5e-145 519.6 365 67.7
HPP92_021671 Vanilla planifolia HOM05D004680 ORTHO05D005939 8.4e-144 513.8 288 78.5
COL.COLO4_30464 Corchorus olitorius HOM05D004680 ORTHO05D005939 1.9e-143 512.7 268 87.3
Actinidia21693 Actinidia chinensis HOM05D004680 ORTHO05D005939 2.7e-142 508.8 292 80.5
unitig_899.g14773 Utricularia gibba HOM05D004680 ORTHO05D005939 1.8e-141 506.1 291 77.3
SEGI_20570 Sequoiadendron giganteum HOM05D004680 ORTHO05D005939 4.1e-138 495.0 289 75.4
Manes.04G131400 Manihot esculenta HOM05D004680 ORTHO05D005939 3.8e-136 488.4 289 77.5
Actinidia32715 Actinidia chinensis HOM05D004680 ORTHO05D005939 1.4e-135 486.5 282 78.7
SGA_v2.0_scaffold5G02541 Striga asiatica HOM05D004680 ORTHO05D005939 1.7e-131 473.0 290 75.5
Zm00001eb270670 Zea mays HOM05D004680 ORTHO05D005939 1.5e-129 466.5 288 71.9
SMO147G0400 Selaginella moellendorffii HOM05D004680 ORTHO05D005939 1.4e-122 443.4 286 69.6
AagrBONN_evm.TU.Sc2ySwM_369.193 Anthoceros agrestis HOM05D004680 ORTHO05D005939 1.8e-122 443.0 285 69.1
Pp3c17_20690 Physcomitrium patens HOM05D004680 ORTHO05D005939 3.3e-108 395.6 285 60.0
Dinv38006 Davidia involucrata HOM05D004680 ORTHO05D005939 1.2e-105 387.1 196 88.8
Hma1.2p1_1617F.1_g293780 Hydrangea macrophylla HOM05D004680 ORTHO05D005939 5.9e-97 358.2 248 71.0
SMO358G0106 Selaginella moellendorffii HOM05D004680 ORTHO05D005939 2.0e-89 333.2 290 51.4
SMO077G0005 Selaginella moellendorffii HOM05D004680 ORTHO05D005939 7.5e-84 314.7 289 51.6
Haze_16340 Corylus avellana HOM05D004680 ORTHO05D005939 1.3e-83 313.9 153 91.5
Gohir.D05G132300 Gossypium hirsutum HOM05D004680 ORTHO05D005939 6.0e-81 305.1 152 88.2
Sc12g0009700 Simmondsia chinensis HOM05D004680 ORTHO05D005939 7.8e-81 304.7 153 87.6
SMO114G0076 Selaginella moellendorffii HOM05D004680 ORTHO05D005939 9.2e-74 281.2 284 46.1
Haze_11589 Corylus avellana HOM05D004680 ORTHO05D005939 1.6e-73 280.4 141 90.8
HPP92_008141 Vanilla planifolia HOM05D004680 ORTHO05D005939 1.5e-60 237.3 120 85.8
TWI75G1313 Tripterygium wilfordii HOM05D004680 ORTHO05D005939 1.9e-55 220.3 109 89.0
PGSC0003DMG400007734 Solanum tuberosum HOM05D004680 ORTHO05D005939 4.4e-52 209.1 123 75.6
SEGI_33813 Sequoiadendron giganteum HOM05D004680 ORTHO05D005939 7.1e-50 201.8 138 65.9
HPP92_008142 Vanilla planifolia HOM05D004680 ORTHO05D005939 1.6e-49 200.7 122 71.3
Oeu063940.2 Olea europaea HOM05D004680 ORTHO05D007319 1.9e-47 193.7 145 64.8
Oeu040360.1 Olea europaea HOM05D004680 ORTHO05D011268 2.1e-46 190.3 127 68.5
Hma1.2p1_1576F.1_g291660 Hydrangea macrophylla HOM05D004680 ORTHO05D005939 1.2e-33 147.9 85 81.2
Hma1.2p1_0033F.1_g020650 Hydrangea macrophylla HOM05D004680 ORTHO05D005939 3.5e-33 146.4 85 80.0
Zm00001eb389580 Zea mays HOM05D004680 ORTHO05D000383 1.0e-27 128.3 80 68.8
Atru.chr1.3422 Acer truncatum HOM05D004680 ORTHO05D005939 1.9e-26 124.0 101 60.4
Solyc07g014600.2 Solanum lycopersicum HOM05D004680 ORTHO05D005939 3.1e-13 80.1 52 69.2


User provided reference genes

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