Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.01G227700 Carya illinoinensis HOM05D005721 ORTHO05D006758 0.0e+00 1319.3 663 100.0
Haze_15914 Corylus avellana HOM05D005721 ORTHO05D006758 0.0e+00 1149.0 659 86.9
QL05p015721 Quercus lobata HOM05D005721 ORTHO05D006758 0.0e+00 1113.6 660 82.9
QL05p015579 Quercus lobata HOM05D005721 ORTHO05D006758 0.0e+00 1105.9 660 82.4
CANSAT56G2950 Cannabis sativa HOM05D005721 ORTHO05D006758 1.0e-301 1039.6 657 77.0
Prupe.3G053200 Prunus persica HOM05D005721 ORTHO05D006758 8.5e-301 1036.6 653 77.9
MD17G1178100 Malus domestica HOM05D005721 ORTHO05D006758 1.4e-298 1029.2 653 77.8
RcHm_v2.0_Chr2g0142311 Rosa chinensis HOM05D005721 ORTHO05D006758 3.3e-297 1024.6 646 77.7
GSVIVG01016897001 Vitis vinifera HOM05D005721 ORTHO05D006758 9.7e-297 1023.1 660 75.9
CSS0018154 Camellia sinensis var. sinensis HOM05D005721 ORTHO05D006758 1.7e-296 1022.3 652 77.0
MD09G1196700 Malus domestica HOM05D005721 ORTHO05D006758 4.8e-296 1020.8 653 77.3
TAR383G0756 Trochodendron aralioides HOM05D005721 ORTHO05D006758 1.1e-295 1019.6 657 76.3
FvH4_6g32880 Fragaria vesca HOM05D005721 ORTHO05D006758 3.4e-294 1014.6 655 75.9
FAN02G2457 Fragaria x ananassa HOM05D005721 ORTHO05D006758 1.7e-293 1012.3 653 76.1
Gorai.011G068100 Gossypium raimondii HOM05D005721 ORTHO05D006758 8.5e-293 1010.0 654 76.0
Gohir.A10G062400 Gossypium hirsutum HOM05D005721 ORTHO05D006758 1.9e-292 1008.8 654 75.7
Lj3g0007444 Lotus japonicus HOM05D005721 ORTHO05D006758 3.2e-292 1008.1 652 75.8
Hma1.2p1_0388F.1_g142110 Hydrangea macrophylla HOM05D005721 ORTHO05D006758 1.2e-291 1006.1 655 75.0
FAN05G3306 Fragaria x ananassa HOM05D005721 ORTHO05D006758 1.0e-290 1003.0 653 75.7
Dinv37937 Davidia involucrata HOM05D005721 ORTHO05D006758 1.4e-290 1002.7 654 75.5
Medtr8g015550 Medicago truncatula HOM05D005721 ORTHO05D006758 3.9e-290 1001.1 653 74.3
Duzib235G0012 Durio zibethinus HOM05D005721 ORTHO05D006758 2.0e-289 998.8 654 76.0
Thecc.06G106800 Theobroma cacao HOM05D005721 ORTHO05D006758 5.7e-289 997.3 653 76.4
vmacro18826 Vaccinium macrocarpon HOM05D005721 ORTHO05D006758 7.0e-287 990.3 649 75.7
Glyma.07G013000 Glycine max HOM05D005721 ORTHO05D006758 1.2e-286 989.6 659 74.2
Eucgr.F03100 Eucalyptus grandis HOM05D005721 ORTHO05D006758 5.0e-285 984.2 656 74.8
Glyma.08G196700 Glycine max HOM05D005721 ORTHO05D006758 6.5e-285 983.8 652 74.4
Duzib192G0301 Durio zibethinus HOM05D005721 ORTHO05D006758 1.1e-284 983.0 655 75.0
Atru.chr1.3621 Acer truncatum HOM05D005721 ORTHO05D006758 7.2e-284 980.3 649 74.1
Lalb_Chr01g0013341 Lupinus albus HOM05D005721 ORTHO05D006758 9.4e-284 979.9 654 73.1
Psat4g194600 Pisum sativum HOM05D005721 ORTHO05D006758 3.6e-283 978.0 653 73.2
Actinidia21738 Actinidia chinensis HOM05D005721 ORTHO05D006758 8.0e-283 976.9 656 73.5
VMungo0331G1465 Vigna mungo HOM05D005721 ORTHO05D006758 8.8e-282 973.4 653 74.7
CsaV3_7G034930 Cucumis sativus L. HOM05D005721 ORTHO05D006758 2.6e-281 971.8 659 72.4
Dinv30404 Davidia involucrata HOM05D005721 ORTHO05D006758 1.3e-280 969.5 619 76.4
Ca_23291_v3 Cicer arietinum L. HOM05D005721 ORTHO05D006758 2.2e-280 968.8 653 72.6
Nn6g35400 Nelumbo nucifera HOM05D005721 ORTHO05D006758 1.1e-279 966.5 650 72.9
Ciclev10025098m.g Citrus clementina HOM05D005721 ORTHO05D006758 3.1e-279 964.9 660 72.1
PGR102G0208 Punica granatum HOM05D005721 ORTHO05D006758 9.1e-279 963.4 660 73.5
Phvul.010G142500 Phaseolus vulgaris HOM05D005721 ORTHO05D006758 3.5e-278 961.4 652 73.9
Sed0006169 Sechium edule HOM05D005721 ORTHO05D006758 2.9e-277 958.4 652 71.5
Manes.11G029200 Manihot esculenta HOM05D005721 ORTHO05D006758 6.5e-277 957.2 654 72.0
Aqoxy7G03983 Aquilegia oxysepala HOM05D005721 ORTHO05D006758 8.5e-277 956.8 650 72.6
PSO210G3246 Papaver somniferum HOM05D005721 ORTHO05D006758 7.7e-270 933.7 664 70.2
PSO210G5250 Papaver somniferum HOM05D005721 ORTHO05D006758 4.2e-268 927.9 653 70.6
Lsat_1_v5_gn_4_96061 Lactuca sativa HOM05D005721 ORTHO05D006758 2.7e-267 925.2 646 70.1
Nitab4.5_0004848g0040 Nicotiana tabacum HOM05D005721 ORTHO05D006758 1.3e-264 916.4 660 69.4
Nn8g38942 Nelumbo nucifera HOM05D005721 ORTHO05D006758 1.7e-264 916.0 651 69.1
Gohir.D10G064100 Gossypium hirsutum HOM05D005721 ORTHO05D006758 2.8e-264 915.2 582 76.8
ECA232G2751 Erigeron canadensis HOM05D005721 ORTHO05D006758 5.9e-262 907.5 656 68.0
CAN.G1668.6 Capsicum annuum HOM05D005721 ORTHO05D006758 1.3e-261 906.4 658 69.3
Sopen03g040160 Solanum pennellii HOM05D005721 ORTHO05D006758 1.3e-261 906.4 651 69.7
Hund07658 Selenicereus undatus HOM05D005721 ORTHO05D006758 2.9e-261 905.2 648 70.1
Solyc03g121350.3 Solanum lycopersicum HOM05D005721 ORTHO05D006758 3.8e-261 904.8 651 69.6
ClCG09G000510 Citrullus lanatus HOM05D005721 ORTHO05D006758 2.1e-259 899.0 659 68.6
TPR.G8754 Trifolium pratense HOM05D005721 ORTHO05D006758 2.8e-259 898.7 615 71.9
THA.LOC104813944 Tarenaya hassleriana HOM05D005721 ORTHO05D006758 1.4e-258 896.3 650 68.8
C06p47250 Brassica napus HOM05D005721 ORTHO05D006758 5.2e-258 894.4 641 68.6
BolC6t39764H Brassica oleracea HOM05D005721 ORTHO05D006758 5.2e-258 894.4 641 68.6
A07p39040 Brassica napus HOM05D005721 ORTHO05D006758 1.2e-257 893.3 641 68.5
Thhalv10018233m.g Eutrema salsugineum HOM05D005721 ORTHO05D006758 2.0e-257 892.5 647 68.6
Lj9A516G96 Lonicera japonica HOM05D005721 ORTHO05D006758 5.7e-257 891.0 663 68.5
AT1G73020 Arabidopsis thaliana HOM05D005721 ORTHO05D006758 9.8e-257 890.2 647 68.2
Carub.0002s1978 Capsella rubella HOM05D005721 ORTHO05D006758 1.7e-256 889.4 647 68.3
Cc04_g02230 Coffea canephora HOM05D005721 ORTHO05D006758 1.7e-256 889.4 649 68.1
MBI01_g16575_MAGBIO Magnolia biondii HOM05D005721 ORTHO05D006758 2.2e-256 889.0 653 68.0
BraA07t31454Z Brassica rapa HOM05D005721 ORTHO05D006758 1.8e-255 885.9 652 67.5
Sp5g27980 Schrenkiella parvula HOM05D005721 ORTHO05D006758 4.1e-255 884.8 641 68.8
AL2G32770 Arabidopsis lyrata HOM05D005721 ORTHO05D006758 5.4e-255 884.4 647 67.5
CARHR065990 Cardamine hirsuta HOM05D005721 ORTHO05D006758 1.6e-254 882.9 647 67.2
Rhsim08G0230700 Rhododendron simsii HOM05D005721 ORTHO05D006758 3.5e-254 881.7 657 68.0
Nitab4.5_0006071g0030 Nicotiana tabacum HOM05D005721 ORTHO05D006758 3.3e-252 875.2 658 68.2
arahy.Tifrunner.gnm1.ann1.NQY1Y2 Arachis hypogaea HOM05D005721 ORTHO05D006758 2.3e-250 869.0 649 65.8
Migut.I00999 Erythranthe guttata HOM05D005721 ORTHO05D006758 3.1e-250 868.6 661 66.1
arahy.Tifrunner.gnm1.ann1.HT12QJ Arachis hypogaea HOM05D005721 ORTHO05D006758 8.9e-250 867.1 649 65.6
SGA_v2.0_scaffold71G23752 Striga asiatica HOM05D005721 ORTHO05D006758 8.9e-250 867.1 649 66.4
Aa31LG4G3310 Aethionema arabicum HOM05D005721 ORTHO05D006758 1.5e-249 866.3 647 67.1
Peaxi162Scf00038g01247 Petunia axillaris HOM05D005721 ORTHO05D006758 3.3e-244 848.6 658 65.5
BolC6t38551H Brassica oleracea HOM05D005721 ORTHO05D006758 2.0e-241 839.3 641 65.7
BraA07t30638Z Brassica rapa HOM05D005721 ORTHO05D006758 2.0e-241 839.3 639 65.9
BcaC08g45678 Brassica carinata HOM05D005721 ORTHO05D006758 1.4e-239 833.2 641 65.4
Os01g0706700 Oryza sativa ssp. japonica HOM05D005721 ORTHO05D006758 3.5e-238 828.6 649 64.7
C06p34410 Brassica napus HOM05D005721 ORTHO05D006758 3.3e-236 822.0 641 64.6
ATR0789G086 Amborella trichopoda HOM05D005721 ORTHO05D006758 4.3e-236 821.6 654 65.4
EL10Ac9g21136 Beta vulgaris HOM05D005721 ORTHO05D006758 3.6e-235 818.5 679 63.3
A07p30000 Brassica napus HOM05D005721 ORTHO05D006758 1.1e-234 817.0 642 64.5
Hma1.2p1_0388F.1_g142120 Hydrangea macrophylla HOM05D005721 ORTHO05D006758 6.0e-230 801.2 525 74.3
Oeu001923.1 Olea europaea HOM05D005721 ORTHO05D006758 3.9e-229 798.5 654 64.2
Sc12g0009950 Simmondsia chinensis HOM05D005721 ORTHO05D006758 5.4e-223 778.1 558 68.6
Cpa.g.sc131.22 Carica papaya HOM05D005721 ORTHO05D006758 3.0e-213 745.7 651 61.3
DCAR_031423 Daucus carota HOM05D005721 ORTHO05D006758 2.1e-206 723.0 650 59.5
AUR62023905 Chenopodium quinoa HOM05D005721 ORTHO05D006758 9.6e-204 714.1 619 61.2
AUR62038341 Chenopodium quinoa HOM05D005721 ORTHO05D006758 7.6e-201 704.5 683 57.1
Zm00001eb361150 Zea mays HOM05D005721 ORTHO05D006758 9.3e-199 697.6 555 64.5
Ah.01g004440 Amaranthus hybridus HOM05D005721 ORTHO05D006758 1.2e-198 697.2 653 58.5
unitig_26.g8931 Utricularia gibba HOM05D005721 ORTHO05D006758 7.9e-190 667.9 627 56.8
MELO3C024406.2 Cucumis melo HOM05D005721 ORTHO05D006758 9.1e-178 627.9 580 57.9
Zm00001eb155350 Zea mays HOM05D005721 ORTHO05D006758 2.6e-172 609.8 500 62.2
Oeu026535.1 Olea europaea HOM05D005721 ORTHO05D006758 1.4e-170 604.0 442 67.0
Actinidia32127 Actinidia chinensis HOM05D005721 ORTHO05D006758 9.1e-170 601.3 654 52.6
AagrBONN_evm.TU.Sc2ySwM_344.674 Anthoceros agrestis HOM05D005721 ORTHO05D006758 8.8e-165 584.7 661 47.8
Mapoly0004s0214 Marchantia polymorpha HOM05D005721 ORTHO05D006758 2.2e-160 570.1 654 47.1
SMO147G0374 Selaginella moellendorffii HOM05D005721 ORTHO05D006758 2.1e-158 563.5 666 45.5
Pp3c7_22640 Physcomitrium patens HOM05D005721 ORTHO05D006758 4.0e-149 532.7 646 44.7
CBR_g57226 Chara braunii HOM05D005721 ORTHO05D006758 3.3e-127 459.9 627 40.2
FAN14G1222 Fragaria x ananassa HOM05D005721 ORTHO05D006758 8.1e-94 349.0 227 71.4
arahy.Tifrunner.gnm1.ann1.NL3M0M Arachis hypogaea HOM05D005721 ORTHO05D006758 1.5e-92 344.7 339 55.5
arahy.Tifrunner.gnm1.ann1.402B9T Arachis hypogaea HOM05D005721 ORTHO05D006758 4.4e-55 220.3 284 44.0
FvH4_6g32370 Fragaria vesca HOM05D005721 ORTHO05D006758 9.7e-55 219.2 147 70.1
QL05p015216 Quercus lobata HOM05D005721 ORTHO05D006758 2.2e-51 208.0 160 65.6
Oeu023783.1 Olea europaea HOM05D005721 ORTHO05D006758 2.5e-50 204.5 281 45.9
Gorai.010G178600 Gossypium raimondii HOM05D005721 ORTHO05D006758 1.8e-48 198.4 157 62.4
Zm00001eb344360 Zea mays HOM05D005721 ORTHO05D006758 9.7e-47 192.6 121 75.2
Glyma.16G086100 Glycine max HOM05D005721 ORTHO05D006758 6.5e-43 179.9 107 76.6
Glyma.16G136400 Glycine max HOM05D005721 ORTHO05D006758 1.0e-40 172.6 107 73.8
VMungo0251G0043 Vigna mungo HOM05D005721 ORTHO05D006758 2.3e-40 171.4 131 65.6
Gohir.D06G152751 Gossypium hirsutum HOM05D005721 ORTHO05D006758 5.2e-40 170.2 156 55.8
Gohir.A06G146950 Gossypium hirsutum HOM05D005721 ORTHO05D006758 3.4e-39 167.5 156 57.1
Zm00001eb192810 Zea mays HOM05D005721 ORTHO05D006758 7.5e-39 166.4 110 76.4
arahy.Tifrunner.gnm1.ann1.P3QXG2 Arachis hypogaea HOM05D005721 ORTHO05D006758 2.8e-38 164.5 174 53.4
SEGI_20658 Sequoiadendron giganteum HOM05D005721 ORTHO05D006758 3.8e-35 154.1 347 30.3
Zm00001eb419420 Zea mays HOM05D005721 ORTHO05D006758 1.6e-33 148.7 94 76.6
Glyma.12G149950 Glycine max HOM05D005721 ORTHO05D006758 2.6e-31 141.4 85 74.1
arahy.Tifrunner.gnm1.ann1.F8M988 Arachis hypogaea HOM05D005721 ORTHO05D006758 1.1e-29 136.0 90 68.9
Glyma.09G112900 Glycine max HOM05D005721 ORTHO05D006758 5.4e-29 133.7 101 64.4
HanXRQChr05g0162621 Helianthus annuus HOM05D005721 ORTHO05D006758 2.9e-27 127.9 83 71.1
arahy.Tifrunner.gnm1.ann1.SY3941 Arachis hypogaea HOM05D005721 ORTHO05D006758 2.8e-25 121.3 82 68.3
HanXRQChr04g0123091 Helianthus annuus HOM05D005721 ORTHO05D006758 4.7e-25 120.6 80 70.0
COL.COLO4_30597 Corchorus olitorius HOM05D005721 ORTHO05D006758 1.9e-21 108.6 83 63.9
Cfa026500 Carpinus fangiana HOM05D005721 ORTHO05D006758 1.7e-19 102.1 520 24.4
HanXRQChr05g0131511 Helianthus annuus HOM05D005721 ORTHO05D006758 8.0e-17 93.2 89 56.2
arahy.Tifrunner.gnm1.ann1.EXE9LQ Arachis hypogaea HOM05D005721 ORTHO05D006758 5.2e-16 90.5 56 69.6
Glyma.19G071451 Glycine max HOM05D005721 ORTHO05D006758 4.9e-14 84.0 54 72.2
HanXRQChr09g0276291 Helianthus annuus HOM05D005721 ORTHO05D006758 4.1e-13 80.9 47 78.7
MCO06G118 Micromonas commoda HOM05D005721 ORTHO05D006758 4.1e-13 80.9 249 28.5


User provided reference genes

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