Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.01G227300 Carya illinoinensis HOM05D005017 ORTHO05D006044 2.6e-133 478.8 254 100.0
Dinv30400 Davidia involucrata HOM05D005017 ORTHO05D006044 7.2e-107 391.0 252 83.3
Thecc.06G107700 Theobroma cacao HOM05D005017 ORTHO05D006044 3.3e-104 382.1 252 79.8
ClCG09G000540 Citrullus lanatus HOM05D005017 ORTHO05D006044 5.9e-101 371.3 253 79.4
Potri.001G199500 Populus trichocarpa HOM05D005017 ORTHO05D006044 1.0e-100 370.5 254 78.7
MELO3C024403.2 Cucumis melo HOM05D005017 ORTHO05D006044 3.8e-100 368.6 254 78.7
CsaV3_7G034910 Cucumis sativus L. HOM05D005017 ORTHO05D006044 1.4e-99 366.7 254 78.3
Duzib235G0510 Durio zibethinus HOM05D005017 ORTHO05D006044 1.9e-99 366.3 253 77.1
CANSAT56G3588 Cannabis sativa HOM05D005017 ORTHO05D006044 2.5e-99 365.9 256 77.7
Nn8g38928 Nelumbo nucifera HOM05D005017 ORTHO05D006044 4.2e-99 365.2 256 78.5
Prupe.3G052700 Prunus persica HOM05D005017 ORTHO05D006044 4.2e-99 365.2 253 77.9
TAR624G0026 Trochodendron aralioides HOM05D005017 ORTHO05D006044 5.5e-99 364.8 256 76.6
Dinv37934 Davidia involucrata HOM05D005017 ORTHO05D006044 7.2e-99 364.4 257 79.0
MSTRG.22609 Avicennia marina HOM05D005017 ORTHO05D006044 2.7e-98 362.5 255 74.5
CSS0030454 Camellia sinensis var. sinensis HOM05D005017 ORTHO05D006044 2.7e-98 362.5 253 77.9
Actinidia21740 Actinidia chinensis HOM05D005017 ORTHO05D006044 3.6e-98 362.1 253 77.9
Manes.04G137400 Manihot esculenta HOM05D005017 ORTHO05D006044 3.0e-97 359.0 256 78.1
MD17G1177100 Malus domestica HOM05D005017 ORTHO05D006044 6.7e-97 357.8 255 76.1
Ciclev10026315m.g Citrus clementina HOM05D005017 ORTHO05D006044 2.5e-96 355.9 259 76.1
MBI01_g27633_MAGBIO Magnolia biondii HOM05D005017 ORTHO05D006044 4.3e-96 355.1 253 74.7
Glyma.07G012600 Glycine max HOM05D005017 ORTHO05D006044 5.7e-96 354.8 257 76.7
COL.COLO4_30606 Corchorus olitorius HOM05D005017 ORTHO05D006044 7.4e-96 354.4 252 76.6
Phvul.010G142100 Phaseolus vulgaris HOM05D005017 ORTHO05D006044 7.4e-96 354.4 253 78.3
VMungo0331G1330 Vigna mungo HOM05D005017 ORTHO05D006044 9.7e-96 354.0 257 75.9
Gohir.A02G116100 Gossypium hirsutum HOM05D005017 ORTHO05D006044 1.7e-95 353.2 254 74.8
MD09G1196300 Malus domestica HOM05D005017 ORTHO05D006044 2.2e-95 352.8 253 76.3
SGA_v2.0_scaffold71G23756 Striga asiatica HOM05D005017 ORTHO05D006044 3.7e-95 352.1 256 74.2
Atru.chr1.3634 Acer truncatum HOM05D005017 ORTHO05D006044 4.8e-95 351.7 251 76.5
Rhsim08G0231100 Rhododendron simsii HOM05D005017 ORTHO05D006044 6.3e-95 351.3 266 73.7
Sed0003007 Sechium edule HOM05D005017 ORTHO05D006044 8.2e-95 350.9 253 76.7
Gohir.D03G057100 Gossypium hirsutum HOM05D005017 ORTHO05D006044 2.4e-94 349.4 250 75.2
Cpa.g.sc663.1 Carica papaya HOM05D005017 ORTHO05D006044 4.1e-94 348.6 255 75.7
Gorai.003G060200 Gossypium raimondii HOM05D005017 ORTHO05D006044 5.3e-94 348.2 250 74.8
Cc04_g02270 Coffea canephora HOM05D005017 ORTHO05D006044 9.1e-94 347.4 245 75.9
GSVIVG01016892001 Vitis vinifera HOM05D005017 ORTHO05D006044 1.2e-93 347.1 247 77.7
Ah.01g016970 Amaranthus hybridus HOM05D005017 ORTHO05D006044 3.4e-93 345.5 257 72.8
Ca_23294_v3 Cicer arietinum L. HOM05D005017 ORTHO05D006044 1.0e-92 344.0 256 75.0
TWI79G0337 Tripterygium wilfordii HOM05D005017 ORTHO05D006044 1.0e-92 344.0 248 75.8
Migut.I00995 Erythranthe guttata HOM05D005017 ORTHO05D006044 1.3e-92 343.6 244 75.8
QL05p015800 Quercus lobata HOM05D005017 ORTHO05D006044 3.8e-92 342.0 346 59.0
Lj3g0014772 Lotus japonicus HOM05D005017 ORTHO05D006044 5.0e-92 341.7 257 72.4
FAN14G3976 Fragaria x ananassa HOM05D005017 ORTHO05D006044 8.5e-92 340.9 256 75.4
RcHm_v2.0_Chr2g0142451 Rosa chinensis HOM05D005017 ORTHO05D006044 8.5e-92 340.9 255 76.5
Potri.001G193700 Populus trichocarpa HOM05D005017 ORTHO05D006044 1.1e-91 340.5 254 74.0
Nitab4.5_0004848g0030 Nicotiana tabacum HOM05D005017 ORTHO05D006044 2.5e-91 339.3 248 71.8
PGR102G3241 Punica granatum HOM05D005017 ORTHO05D006044 3.2e-91 339.0 257 73.9
Glyma.08G196300 Glycine max HOM05D005017 ORTHO05D006044 9.4e-91 337.4 257 73.5
Eucgr.F03103 Eucalyptus grandis HOM05D005017 ORTHO05D006044 2.1e-90 336.3 256 74.2
Medtr8g015590 Medicago truncatula HOM05D005017 ORTHO05D006044 3.6e-90 335.5 258 72.9
Lalb_Chr01g0013321 Lupinus albus HOM05D005017 ORTHO05D006044 4.7e-90 335.1 255 73.3
TPR.G8766 Trifolium pratense HOM05D005017 ORTHO05D006044 1.4e-89 333.6 257 73.9
Nitab4.5_0006071g0010 Nicotiana tabacum HOM05D005017 ORTHO05D006044 1.8e-89 333.2 243 71.6
Psat4g194480 Pisum sativum HOM05D005017 ORTHO05D006044 5.1e-89 331.6 258 73.6
AT1G51730 Arabidopsis thaliana HOM05D005017 ORTHO05D006044 1.5e-88 330.1 256 71.5
ATR0789G068 Amborella trichopoda HOM05D005017 ORTHO05D006044 4.4e-88 328.6 243 70.0
FAN09G3568 Fragaria x ananassa HOM05D005017 ORTHO05D006044 1.3e-87 327.0 256 73.0
Atru.chr1.3630 Acer truncatum HOM05D005017 ORTHO05D006044 2.2e-87 326.2 238 75.2
TWI31G0253 Tripterygium wilfordii HOM05D005017 ORTHO05D006044 2.2e-87 326.2 246 75.2
Lalb_Chr04g0263111 Lupinus albus HOM05D005017 ORTHO05D006044 3.7e-87 325.5 253 71.9
FvH4_6g32940 Fragaria vesca HOM05D005017 ORTHO05D006044 4.8e-87 325.1 256 73.0
Aqoxy2G03852 Aquilegia oxysepala HOM05D005017 ORTHO05D006044 8.2e-87 324.3 257 69.3
Sopen03g040120 Solanum pennellii HOM05D005017 ORTHO05D006044 3.1e-86 322.4 249 70.7
ECA247G1989 Erigeron canadensis HOM05D005017 ORTHO05D006044 4.1e-86 322.0 257 72.0
HanXRQChr04g0095781 Helianthus annuus HOM05D005017 ORTHO05D006044 4.1e-86 322.0 257 70.4
THA.LOC104817935 Tarenaya hassleriana HOM05D005017 ORTHO05D006044 4.1e-86 322.0 261 69.3
Aa31LG10G3080 Aethionema arabicum HOM05D005017 ORTHO05D006044 5.3e-86 321.6 251 68.1
AL1G59670 Arabidopsis lyrata HOM05D005017 ORTHO05D006044 7.0e-86 321.2 256 71.1
Hma1.2p1_0679F.1_g202280 Hydrangea macrophylla HOM05D005017 ORTHO05D006044 7.0e-86 321.2 251 72.5
CAN.G1668.3 Capsicum annuum HOM05D005017 ORTHO05D006044 1.6e-85 320.1 249 69.5
Lsat_1_v5_gn_1_36441 Lactuca sativa HOM05D005017 ORTHO05D006044 1.6e-85 320.1 248 70.6
PGSC0003DMG401002511 Solanum tuberosum HOM05D005017 ORTHO05D006044 2.0e-85 319.7 249 70.3
EL10Ac9g21132 Beta vulgaris HOM05D005017 ORTHO05D006044 2.6e-85 319.3 243 73.3
Thhalv10011475m.g Eutrema salsugineum HOM05D005017 ORTHO05D006044 1.0e-84 317.4 256 68.8
Sp1g38370 Schrenkiella parvula HOM05D005017 ORTHO05D006044 2.2e-84 316.2 255 68.2
AUR62038338 Chenopodium quinoa HOM05D005017 ORTHO05D006044 4.2e-83 312.0 246 68.7
CARHR041890 Cardamine hirsuta HOM05D005017 ORTHO05D006044 9.4e-83 310.8 242 69.0
Cfa003607 Carpinus fangiana HOM05D005017 ORTHO05D006044 1.2e-82 310.5 230 72.6
AUR62023908 Chenopodium quinoa HOM05D005017 ORTHO05D006044 1.2e-82 310.5 246 68.3
DCAR_026373 Daucus carota HOM05D005017 ORTHO05D006044 1.6e-82 310.1 273 65.2
Solyc03g121310.2 Solanum lycopersicum HOM05D005017 ORTHO05D006044 1.6e-82 310.1 256 68.4
Sc12g0009900 Simmondsia chinensis HOM05D005017 ORTHO05D006044 3.6e-82 308.9 215 71.6
C03p90280 Brassica napus HOM05D005017 ORTHO05D006044 4.7e-82 308.5 251 68.5
Carub.0001s4060 Capsella rubella HOM05D005017 ORTHO05D006044 4.7e-82 308.5 244 68.9
vmacro18822 Vaccinium macrocarpon HOM05D005017 ORTHO05D006044 2.3e-81 306.2 278 64.7
A08p02530 Brassica napus HOM05D005017 ORTHO05D006044 8.8e-81 304.3 246 66.3
Zm00001eb162290 Zea mays HOM05D005017 ORTHO05D006044 9.7e-80 300.8 247 67.2
Lsat_1_v5_gn_5_133981 Lactuca sativa HOM05D005017 ORTHO05D006044 1.3e-79 300.4 249 67.5
Peaxi162Scf00038g01246 Petunia axillaris HOM05D005017 ORTHO05D006044 2.8e-79 299.3 199 74.4
Lj5C49T18 Lonicera japonica HOM05D005017 ORTHO05D006044 4.8e-79 298.5 191 77.0
HanXRQChr12g0360701 Helianthus annuus HOM05D005017 ORTHO05D006044 6.3e-79 298.1 248 64.9
HPP92_023230 Vanilla planifolia HOM05D005017 ORTHO05D006044 1.1e-78 297.4 246 66.3
BraA08t32293Z Brassica rapa HOM05D005017 ORTHO05D006044 1.4e-78 297.0 242 68.6
A05p19400 Brassica napus HOM05D005017 ORTHO05D006044 3.1e-78 295.8 236 67.4
Os01g0558300 Oryza sativa ssp. japonica HOM05D005017 ORTHO05D006044 3.1e-78 295.8 252 65.5
BolC6t36489H Brassica oleracea HOM05D005017 ORTHO05D006044 4.1e-78 295.4 237 67.5
unitig_0.g2868 Utricularia gibba HOM05D005017 ORTHO05D006044 1.6e-77 293.5 252 65.5
Ah.01g004460 Amaranthus hybridus HOM05D005017 ORTHO05D006044 2.7e-77 292.7 297 57.9
BcaC01g01293 Brassica carinata HOM05D005017 ORTHO05D006044 2.7e-77 292.7 265 64.2
BolC3t21350H Brassica oleracea HOM05D005017 ORTHO05D006044 4.5e-77 292.0 251 67.3
SEGI_04320 Sequoiadendron giganteum HOM05D005017 ORTHO05D006044 5.9e-77 291.6 248 64.1
BraA05t20844Z Brassica rapa HOM05D005017 ORTHO05D006044 7.7e-77 291.2 243 65.0
CDE05G2485 Ceratophyllum demersum HOM05D005017 ORTHO05D006044 3.8e-76 288.9 244 64.3
FAN05G4929 Fragaria x ananassa HOM05D005017 ORTHO05D006044 1.6e-74 283.5 334 54.5
arahy.Tifrunner.gnm1.ann1.TCAK26 Arachis hypogaea HOM05D005017 ORTHO05D006044 2.7e-74 282.7 255 65.1
PSO210G2569 Papaver somniferum HOM05D005017 ORTHO05D006044 8.0e-74 281.2 253 62.8
BcaC08g43934 Brassica carinata HOM05D005017 ORTHO05D006044 1.0e-73 280.8 245 63.7
arahy.Tifrunner.gnm1.ann1.ZK2LT4 Arachis hypogaea HOM05D005017 ORTHO05D006044 1.8e-73 280.0 255 64.7
C06p13290 Brassica napus HOM05D005017 ORTHO05D006044 2.3e-73 279.6 243 63.8
Mapoly0076s0035 Marchantia polymorpha HOM05D005017 ORTHO05D006044 2.6e-72 276.2 252 60.3
Haze_15918 Corylus avellana HOM05D005017 ORTHO05D006044 4.8e-71 271.9 178 77.0
SalBow6G5092 Salvia bowleyana HOM05D005017 ORTHO05D006044 5.4e-70 268.5 248 61.3
Sabra01G0156200 Salix brachista HOM05D000200 ORTHO05D000262 5.0e-68 261.9 287 54.7
SGA_v2.0_scaffold45G16987 Striga asiatica HOM05D005017 ORTHO05D006044 2.5e-67 259.6 248 63.3
ECA234G0069 Erigeron canadensis HOM05D005017 ORTHO05D006044 3.2e-67 259.2 249 57.4
Pp3c27_5930 Physcomitrium patens HOM05D005017 ORTHO05D006044 2.0e-64 250.0 247 55.9
Pp3c5_13990 Physcomitrium patens HOM05D005017 ORTHO05D006044 1.1e-62 244.2 257 54.9
Actinidia32130 Actinidia chinensis HOM05D005017 ORTHO05D006044 2.4e-62 243.0 242 59.9
Gohir.A05G133633 Gossypium hirsutum HOM05D005017 ORTHO05D006044 2.0e-61 240.0 255 55.7
Zm00001eb356680 Zea mays HOM05D005017 ORTHO05D006044 2.1e-58 229.9 247 56.3
SMO300G0020 Selaginella moellendorffii HOM05D005017 ORTHO05D006044 1.7e-55 220.3 247 52.6
Lj9A517T55 Lonicera japonica HOM05D005017 ORTHO05D006044 2.9e-55 219.5 220 56.4
CSS0006284 Camellia sinensis var. sinensis HOM05D005017 ORTHO05D006044 8.3e-55 218.0 148 74.3
CBR_g78883 Chara braunii HOM05D005017 ORTHO05D006044 2.0e-53 213.4 234 51.3
Oeu052817.1 Olea europaea HOM05D005017 ORTHO05D006044 6.2e-50 201.8 136 75.0
Gorai.009G139400 Gossypium raimondii HOM05D005017 ORTHO05D006044 1.8e-49 200.3 132 75.0
BcaB07g33629 Brassica carinata HOM05D005017 ORTHO05D006044 8.3e-47 191.4 167 65.3
Gohir.D05G135550 Gossypium hirsutum HOM05D005017 ORTHO05D006044 2.0e-45 186.8 143 67.1
Hma1.2p1_0679F.1_g202290 Hydrangea macrophylla HOM05D005017 ORTHO05D006044 2.0e-45 186.8 149 71.8
Duzib192G1032 Durio zibethinus HOM05D005017 ORTHO05D006044 1.1e-41 174.5 256 43.0
PSO170G1437 Papaver somniferum HOM05D005017 ORTHO05D006044 1.1e-41 174.5 144 61.8
BcaB02g11274 Brassica carinata HOM05D005017 ORTHO05D006044 3.9e-36 156.0 203 47.3
FAN02G2875 Fragaria x ananassa HOM05D005017 ORTHO05D006044 1.1e-35 154.5 340 39.7
A06p02280 Brassica napus HOM05D005017 ORTHO05D006044 8.1e-34 148.3 197 51.8
Cre03.g201776 Chlamydomonas reinhardtii HOM05D005017 ORTHO05D006044 8.1e-34 148.3 230 38.7
Oeu052818.1 Olea europaea HOM05D005017 ORTHO05D006044 1.9e-30 137.1 118 66.1
PRCOL_00005001 Prasinoderma coloniale HOM05D005017 ORTHO05D006044 3.5e-29 132.9 245 37.1
Aa31csc1849G10 Aethionema arabicum HOM05D005017 ORTHO05D006044 1.5e-27 127.5 108 63.9
MCO07G323 Micromonas commoda HOM05D005017 ORTHO05D006044 5.6e-27 125.6 230 36.5
Oeu026734.1 Olea europaea HOM05D005017 ORTHO05D006044 2.4e-25 120.2 72 86.1
PSO782G0965 Papaver somniferum HOM05D005017 ORTHO05D006044 3.4e-24 116.3 91 62.6
Aa31LG1G17240 Aethionema arabicum HOM05D005017 ORTHO05D006044 2.1e-21 107.1 57 86.0
PSO135G0227 Papaver somniferum HOM05D005017 ORTHO05D006044 1.1e-19 101.3 78 62.8
PSO675G1433 Papaver somniferum HOM05D005017 ORTHO05D006044 7.3e-19 98.6 78 61.5
CSS0004179 Camellia sinensis var. sinensis HOM05D005017 ORTHO05D006044 9.6e-19 98.2 82 74.4
Cfa022882 Carpinus fangiana HOM05D005017 ORTHO05D006044 6.7e-12 75.5 163 36.2
Hund07663 Selenicereus undatus HOM05D001165 ORTHO05D010360 9.9e-08 61.6 38 76.3
Cfa024493 Carpinus fangiana HOM05D003486 ORTHO05D124746 1.4e-06 57.8 121 29.8
TAR383G0476 Trochodendron aralioides HOM05D005017 ORTHO05D006044 3.2e-06 56.6 34 67.6
Migut.I01159 Erythranthe guttata HOM05D005017 ORTHO05D006044 7.1e-06 55.5 139 30.9


User provided reference genes

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