Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.01G214500 Carya illinoinensis HOM05D002144 ORTHO05D002170 5.4e-55 217.6 127 100.0
Duzib192G0893 Durio zibethinus HOM05D002144 ORTHO05D002170 6.7e-37 157.5 129 73.6
Duzib235G0612 Durio zibethinus HOM05D002144 ORTHO05D002170 5.6e-36 154.5 130 66.9
COL.COLO4_30825 Corchorus olitorius HOM05D002144 ORTHO05D002170 3.7e-35 151.8 122 74.6
Dinv37840 Davidia involucrata HOM05D002144 ORTHO05D002170 1.8e-34 149.4 130 63.8
Gohir.A05G138200 Gossypium hirsutum HOM05D002144 ORTHO05D002170 3.1e-34 148.7 129 62.0
Hma1.2p1_0229F.1_g096900 Hydrangea macrophylla HOM05D002144 ORTHO05D002170 1.2e-33 146.7 131 69.5
Nn8g38544 Nelumbo nucifera HOM05D002144 ORTHO05D002170 1.2e-33 146.7 127 63.8
Gorai.009G144700 Gossypium raimondii HOM05D002144 ORTHO05D002170 1.3e-32 143.3 126 58.7
MD09G1176600 Malus domestica HOM05D002144 ORTHO05D002170 1.3e-32 143.3 128 71.9
MD17G1150200 Malus domestica HOM05D002144 ORTHO05D002170 3.8e-32 141.7 128 70.3
Dinv20398 Davidia involucrata HOM05D002144 ORTHO05D002170 4.9e-32 141.4 125 60.0
QL05p002979 Quercus lobata HOM05D002144 ORTHO05D002170 4.2e-31 138.3 130 64.6
GSVIVG01016701001 Vitis vinifera HOM05D002144 ORTHO05D002170 1.6e-30 136.3 128 57.0
Actinidia24441 Actinidia chinensis HOM05D002144 ORTHO05D002170 7.9e-30 134.0 136 63.2
Thecc.06G126600 Theobroma cacao HOM05D002144 ORTHO05D002170 1.3e-29 133.3 114 71.9
Manes.04G148800 Manihot esculenta HOM05D002144 ORTHO05D002170 1.8e-29 132.9 114 75.4
FvH4_6g35330 Fragaria vesca HOM05D002144 ORTHO05D002170 2.3e-29 132.5 130 60.0
FAN09G1588 Fragaria x ananassa HOM05D002144 ORTHO05D002170 2.3e-29 132.5 130 60.0
CiPaw.02G133200 Carya illinoinensis HOM05D002144 ORTHO05D002170 5.1e-29 131.3 71 90.1
RcHm_v2.0_Chr2g0146781 Rosa chinensis HOM05D002144 ORTHO05D002170 5.1e-29 131.3 130 69.2
PGR119G1483 Punica granatum HOM05D002144 ORTHO05D002170 6.7e-29 131.0 135 59.3
TWI23G1155 Tripterygium wilfordii HOM05D002144 ORTHO05D002170 6.7e-29 131.0 137 55.5
Ciclev10026754m.g Citrus clementina HOM05D002144 ORTHO05D002170 3.3e-28 128.6 137 66.4
Oeu059028.1 Olea europaea HOM05D002144 ORTHO05D002170 5.6e-28 127.9 141 58.9
TWI14G1240 Tripterygium wilfordii HOM05D002144 ORTHO05D002170 1.3e-27 126.7 137 64.2
Atru.chr1.4136 Acer truncatum HOM05D002144 ORTHO05D002170 3.7e-27 125.2 121 62.8
FAN14G0119 Fragaria x ananassa HOM05D002144 ORTHO05D002170 6.2e-27 124.4 121 57.9
Oeu008518.1 Olea europaea HOM05D002144 ORTHO05D002170 6.2e-27 124.4 141 59.6
Lj3g0016932 Lotus japonicus HOM05D002144 ORTHO05D002170 8.2e-27 124.0 126 66.7
MSTRG.10926 Avicennia marina HOM05D002144 ORTHO05D002170 1.8e-26 122.9 139 61.2
Manes.11G015300 Manihot esculenta HOM05D002144 ORTHO05D002170 1.8e-26 122.9 115 72.2
Sabra01G0128200 Salix brachista HOM05D002144 ORTHO05D002170 1.8e-26 122.9 137 67.2
FAN02G3229 Fragaria x ananassa HOM05D002144 ORTHO05D002170 6.9e-26 120.9 121 66.1
Ca_04812_v3 Cicer arietinum L. HOM05D002144 ORTHO05D002170 2.6e-25 119.0 126 62.7
Haze_16090 Corylus avellana HOM05D002144 ORTHO05D002170 3.4e-25 118.6 70 84.3
Potri.001G164800 Populus trichocarpa HOM05D002144 ORTHO05D002170 4.5e-25 118.2 106 71.7
Gohir.D05G140350 Gossypium hirsutum HOM05D002144 ORTHO05D002170 5.8e-25 117.9 124 52.4
Actinidia21816 Actinidia chinensis HOM05D002144 ORTHO05D002170 7.6e-25 117.5 125 60.0
DCAR_016099 Daucus carota HOM05D002144 ORTHO05D002170 1.7e-24 116.3 119 63.9
MBI19_g38000_MAGBIO Magnolia biondii HOM05D002144 ORTHO05D002170 1.7e-24 116.3 127 50.4
Prupe.3G035700 Prunus persica HOM05D002144 ORTHO05D002170 1.7e-24 116.3 111 65.8
Rhsim08G0242200 Rhododendron simsii HOM05D002144 ORTHO05D002170 2.9e-24 115.5 133 63.9
Cc04_g00930 Coffea canephora HOM05D002144 ORTHO05D002170 3.8e-24 115.2 145 53.8
SGA_v2.0_scaffold4G02090 Striga asiatica HOM05D002144 ORTHO05D002170 3.8e-24 115.2 125 62.4
Cpa.g.sc25.165 Carica papaya HOM05D002144 ORTHO05D002170 8.4e-24 114.0 75 76.0
Aqoxy7G00990 Aquilegia oxysepala HOM05D002144 ORTHO05D002170 3.2e-23 112.1 128 58.6
Hund05715 Selenicereus undatus HOM05D002144 ORTHO05D002170 9.3e-23 110.5 153 53.6
MSTRG.9537 Avicennia marina HOM05D002144 ORTHO05D002170 2.7e-22 109.0 138 56.5
FAN05G3077 Fragaria x ananassa HOM05D002144 ORTHO05D002170 2.7e-22 109.0 137 58.4
Potri.003G070500 Populus trichocarpa HOM05D002144 ORTHO05D002170 4.6e-22 108.2 121 60.3
vmacro15066 Vaccinium macrocarpon HOM05D002144 ORTHO05D002170 3.0e-21 105.5 123 61.8
VMungo0331G1113 Vigna mungo HOM05D002144 ORTHO05D002170 3.0e-21 105.5 127 61.4
MSTRG.9534 Avicennia marina HOM05D002144 ORTHO05D002170 5.1e-21 104.8 137 54.7
Thhalv10011865m.g Eutrema salsugineum HOM05D002144 ORTHO05D002170 1.5e-20 103.2 131 45.8
Lsat_1_v5_gn_4_91600 Lactuca sativa HOM05D002144 ORTHO05D002170 1.5e-20 103.2 131 51.1
Sc15g0000660 Simmondsia chinensis HOM05D002144 ORTHO05D002170 1.9e-20 102.8 131 56.5
EL10Ac7g16456 Beta vulgaris HOM05D002144 ORTHO05D002170 5.7e-20 101.3 140 47.9
Migut.I01115 Erythranthe guttata HOM05D002144 ORTHO05D002170 1.3e-19 100.1 120 60.0
ATR0681G069 Amborella trichopoda HOM05D002144 ORTHO05D002170 1.6e-19 99.8 135 48.9
Psat4g166680 Pisum sativum HOM05D002144 ORTHO05D002170 1.6e-19 99.8 113 49.6
Medtr8g022300 Medicago truncatula HOM05D002144 ORTHO05D002170 2.2e-19 99.4 131 58.8
HanXRQChr04g0094481 Helianthus annuus HOM05D002144 ORTHO05D002170 3.7e-19 98.6 127 53.5
SalBow7G2197 Salvia bowleyana HOM05D002144 ORTHO05D002170 3.7e-19 98.6 134 52.2
PSO223G0023 Papaver somniferum HOM05D002144 ORTHO05D002170 4.8e-19 98.2 129 53.5
arahy.Tifrunner.gnm1.ann1.MBM2VS Arachis hypogaea HOM05D002144 ORTHO05D002170 8.2e-19 97.4 105 64.8
CARHR044400 Cardamine hirsuta HOM05D002144 ORTHO05D002170 8.2e-19 97.4 131 45.0
Ca_30856_v3 Cicer arietinum L. HOM05D002144 ORTHO05D002170 8.2e-19 97.4 110 60.9
MBI13_g01666_MAGBIO Magnolia biondii HOM05D002144 ORTHO05D002170 8.2e-19 97.4 127 56.7
ClCG09G001220 Citrullus lanatus HOM05D002144 ORTHO05D002170 1.4e-18 96.7 107 49.5
Phvul.010G126600 Phaseolus vulgaris HOM05D002144 ORTHO05D002170 1.4e-18 96.7 111 49.5
unitig_748.g8062 Utricularia gibba HOM05D002144 ORTHO05D002170 1.4e-18 96.7 127 47.2
PSO386G0162 Papaver somniferum HOM05D002144 ORTHO05D002170 1.8e-18 96.3 129 55.8
AL1G62770 Arabidopsis lyrata HOM05D002144 ORTHO05D002170 2.4e-18 95.9 131 44.3
AT1G54070 Arabidopsis thaliana HOM05D002144 ORTHO05D002170 3.1e-18 95.5 130 45.4
Glyma.07G043000 Glycine max HOM05D002144 ORTHO05D002170 4.1e-18 95.1 111 63.1
BcaB07g33437 Brassica carinata HOM05D002144 ORTHO05D002170 9.0e-18 94.0 131 42.7
Gorai.006G090200 Gossypium raimondii HOM05D002144 ORTHO05D002170 1.2e-17 93.6 116 55.2
Gohir.D09G075100 Gossypium hirsutum HOM05D002144 ORTHO05D002170 1.5e-17 93.2 117 54.7
Peaxi162Scf00207g01541 Petunia axillaris HOM05D002144 ORTHO05D002170 1.5e-17 93.2 143 52.4
Sed0018160 Sechium edule HOM05D002144 ORTHO05D002170 1.5e-17 93.2 63 69.8
THA.LOC104822669 Tarenaya hassleriana HOM05D002144 ORTHO05D002170 3.4e-17 92.0 127 46.5
ClCG07G014400 Citrullus lanatus HOM05D002144 ORTHO05D002170 5.9e-17 91.3 122 49.2
Migut.D00918 Erythranthe guttata HOM05D002144 ORTHO05D002170 7.6e-17 90.9 133 51.1
Gohir.A09G075400 Gossypium hirsutum HOM05D002144 ORTHO05D002170 7.6e-17 90.9 116 54.3
Lalb_Chr10g0101281 Lupinus albus HOM05D002144 ORTHO05D002170 1.3e-16 90.1 58 72.4
Ah.08g217150 Amaranthus hybridus HOM05D002144 ORTHO05D002170 2.9e-16 89.0 125 45.6
Glyma.16G011400 Glycine max HOM05D002144 ORTHO05D002170 2.9e-16 89.0 100 66.0
PSO223G0021 Papaver somniferum HOM05D002144 ORTHO05D002170 2.9e-16 89.0 129 43.4
Sed0008928 Sechium edule HOM05D002144 ORTHO05D002170 2.9e-16 89.0 61 68.9
Sp1g40510 Schrenkiella parvula HOM05D001069 ORTHO05D002170 6.5e-16 87.8 121 41.3
MELO3C024325.2 Cucumis melo HOM05D002144 ORTHO05D002170 1.4e-15 86.7 64 67.2
Sed0008740 Sechium edule HOM05D002144 ORTHO05D002170 1.9e-15 86.3 135 45.9
Aa31LG10G1360 Aethionema arabicum HOM05D000815 ORTHO05D000636 2.5e-15 85.9 127 41.7
MELO3C022686.2 Cucumis melo HOM05D002144 ORTHO05D002170 2.5e-15 85.9 145 47.6
PSO386G0143 Papaver somniferum HOM05D002144 ORTHO05D002170 2.5e-15 85.9 129 43.4
CsaV3_7G034150 Cucumis sativus L. HOM05D002144 ORTHO05D002170 3.2e-15 85.5 64 67.2
PGR102G1253 Punica granatum HOM05D002144 ORTHO05D002170 4.2e-15 85.1 128 45.3
BcaB02g10863 Brassica carinata HOM05D002144 ORTHO05D002170 5.5e-15 84.7 131 38.2
BolC6t36748H Brassica oleracea HOM05D002144 ORTHO05D002170 7.2e-15 84.3 130 42.3
Carub.0001s4330 Capsella rubella HOM05D002144 ORTHO05D002170 7.2e-15 84.3 138 42.8
Eucgr.I02133 Eucalyptus grandis HOM05D002144 ORTHO05D002170 1.2e-14 83.6 83 53.0
C06p15600 Brassica napus HOM05D002144 ORTHO05D002170 2.1e-14 82.8 130 41.5
Solyc06g063060.3 Solanum lycopersicum HOM05D002144 ORTHO05D002170 2.7e-14 82.4 146 51.4
Sopen06g022510 Solanum pennellii HOM05D002144 ORTHO05D002170 2.7e-14 82.4 146 51.4
A05p17730 Brassica napus HOM05D002144 ORTHO05D002170 3.6e-14 82.0 130 41.5
BraA05t20665Z Brassica rapa HOM05D002144 ORTHO05D002170 3.6e-14 82.0 130 41.5
BcaC08g44159 Brassica carinata HOM05D002144 ORTHO05D002170 1.0e-13 80.5 130 41.5
Nitab4.5_0003137g0020 Nicotiana tabacum HOM05D002144 ORTHO05D002170 1.0e-13 80.5 143 53.1
CANSAT56G1652 Cannabis sativa HOM05D002144 ORTHO05D002170 1.8e-13 79.7 155 51.6
PGSC0003DMG400004897 Solanum tuberosum HOM05D002144 ORTHO05D002170 3.0e-13 79.0 148 50.0
Nitab4.5_0002716g0090 Nicotiana tabacum HOM05D002144 ORTHO05D002170 5.1e-13 78.2 143 50.3
Eucgr.J02610 Eucalyptus grandis HOM05D002144 ORTHO05D002170 1.1e-12 77.0 135 40.7
Zm00001eb040560 Zea mays HOM05D002144 ORTHO05D002170 1.1e-12 77.0 141 40.4
C06p09860 Brassica napus HOM05D000815 ORTHO05D000636 1.5e-12 76.6 118 44.1
BolC6t36057H Brassica oleracea HOM05D000815 ORTHO05D000636 1.5e-12 76.6 118 44.1
TPR.G16655 Trifolium pratense HOM05D002144 ORTHO05D002170 1.5e-12 76.6 121 52.1
A06p00580 Brassica napus HOM05D000815 ORTHO05D000636 1.9e-12 76.3 122 42.6
BraA06t23272Z Brassica rapa HOM05D000815 ORTHO05D000636 3.3e-12 75.5 119 42.9
ECA232G0343 Erigeron canadensis HOM05D003140 ORTHO05D003851 1.8e-10 69.7 130 41.5
CAN.G1743.3 Capsicum annuum HOM05D002144 ORTHO05D002170 3.1e-10 68.9 109 42.2
Os09g0437500 Oryza sativa ssp. japonica HOM05D002144 ORTHO05D002170 6.9e-10 67.8 148 45.9
Sp3g12440 Schrenkiella parvula HOM05D002144 ORTHO05D002170 1.0e-08 63.9 127 36.2
Zm00001eb313950 Zea mays HOM05D002144 ORTHO05D002170 2.2e-08 62.8 57 54.4
Sc16g0008780 Simmondsia chinensis HOM05D002144 ORTHO05D002170 2.9e-08 62.4 120 36.7
CDE06G1752 Ceratophyllum demersum HOM05D002144 ORTHO05D002170 6.5e-08 61.2 74 47.3
Lsat_1_v5_gn_1_37700 Lactuca sativa HOM05D002144 ORTHO05D002170 1.4e-07 60.1 75 48.0
Nn3g21509 Nelumbo nucifera HOM05D002144 ORTHO05D002170 2.5e-07 59.3 85 42.4
PGR031G3340 Punica granatum HOM05D002144 ORTHO05D002170 2.5e-07 59.3 74 45.9
Nn4g25785 Nelumbo nucifera HOM05D002144 ORTHO05D002170 5.5e-07 58.2 85 41.2
Hund07106 Selenicereus undatus HOM05D002144 ORTHO05D002170 7.2e-07 57.8 86 37.2
BraA05t22338Z Brassica rapa HOM05D002144 ORTHO05D002170 9.4e-07 57.4 71 43.7
AUR62005218 Chenopodium quinoa HOM05D002144 ORTHO05D002170 9.4e-07 57.4 83 38.6
ClCG03G017140 Citrullus lanatus HOM05D002144 ORTHO05D002170 9.4e-07 57.4 42 57.1
Migut.N02089 Erythranthe guttata HOM05D002144 ORTHO05D002170 9.4e-07 57.4 85 42.4
Nitab4.5_0003113g0120 Nicotiana tabacum HOM05D002144 ORTHO05D002170 9.4e-07 57.4 50 58.0
CAN.G1459.22 Capsicum annuum HOM05D002144 ORTHO05D002170 1.2e-06 57.0 50 58.0
Sc09g0002900 Simmondsia chinensis HOM05D002144 ORTHO05D002170 1.2e-06 57.0 35 65.7
Solyc01g099840.3 Solanum lycopersicum HOM05D002144 ORTHO05D002170 1.2e-06 57.0 50 58.0
Sopen00g009360 Solanum pennellii HOM05D002144 ORTHO05D002170 1.2e-06 57.0 50 58.0
Sopen01g043350 Solanum pennellii HOM05D002144 ORTHO05D002170 1.2e-06 57.0 50 58.0
PGSC0003DMG400024720 Solanum tuberosum HOM05D002144 ORTHO05D002170 1.2e-06 57.0 50 58.0
TAR365G0709 Trochodendron aralioides HOM05D002144 ORTHO05D002170 1.2e-06 57.0 41 58.5
C05p53460 Brassica napus HOM05D002144 ORTHO05D002170 1.6e-06 56.6 71 45.1
BolC5t34023H Brassica oleracea HOM05D002144 ORTHO05D002170 1.6e-06 56.6 71 45.1
CDE11G0597 Ceratophyllum demersum HOM05D002144 ORTHO05D002170 1.6e-06 56.6 71 45.1
AUR62000749 Chenopodium quinoa HOM05D002144 ORTHO05D002170 1.6e-06 56.6 36 61.1
AUR62000750 Chenopodium quinoa HOM05D002144 ORTHO05D002170 1.6e-06 56.6 36 61.1
Lsat_1_v5_gn_7_71780 Lactuca sativa HOM05D002144 ORTHO05D002170 1.6e-06 56.6 131 36.6
Peaxi162Scf00037g01327 Petunia axillaris HOM05D002144 ORTHO05D002170 1.6e-06 56.6 50 52.0
Hma1.2p1_1021F.1_g248660 Hydrangea macrophylla HOM05D002144 ORTHO05D002170 2.1e-06 56.2 85 40.0
MBI18_g06040_MAGBIO Magnolia biondii HOM05D002144 ORTHO05D002170 2.1e-06 56.2 83 38.6
MD04G1198800 Malus domestica HOM05D002144 ORTHO05D002170 2.1e-06 56.2 85 42.4
ATR0796G073 Amborella trichopoda HOM05D002144 ORTHO05D002170 2.7e-06 55.8 72 45.8
unitig_0.g2318 Utricularia gibba HOM05D002144 ORTHO05D002170 2.7e-06 55.8 79 39.2
Aa31LG8G1430 Aethionema arabicum HOM05D002144 ORTHO05D002170 3.6e-06 55.5 29 75.9
AL3G26430 Arabidopsis lyrata HOM05D002144 ORTHO05D002170 3.6e-06 55.5 29 79.3
EL10Ac4g09903 Beta vulgaris HOM05D002144 ORTHO05D002170 3.6e-06 55.5 36 61.1
Nitab4.5_0007800g0010 Nicotiana tabacum HOM05D002144 ORTHO05D002170 3.6e-06 55.5 50 56.0
PSO724G0168 Papaver somniferum HOM05D002144 ORTHO05D002170 3.6e-06 55.5 68 45.6
Ah.04g161190 Amaranthus hybridus HOM05D002144 ORTHO05D002170 4.7e-06 55.1 46 56.5
Eucgr.B01910 Eucalyptus grandis HOM05D002144 ORTHO05D002170 4.7e-06 55.1 68 47.1
A05p35280 Brassica napus HOM05D002144 ORTHO05D002170 6.1e-06 54.7 71 45.1
MELO3C015306.2 Cucumis melo HOM05D002144 ORTHO05D002170 6.1e-06 54.7 32 68.8
CsaV3_2G006690 Cucumis sativus L. HOM05D002144 ORTHO05D002170 6.1e-06 54.7 68 47.1
Eucgr.H04545 Eucalyptus grandis HOM05D002144 ORTHO05D002170 6.1e-06 54.7 77 37.7
Glyma.20G237200 Glycine max HOM05D002144 ORTHO05D002170 6.1e-06 54.7 85 43.5
Os03g0342900 Oryza sativa ssp. japonica HOM05D002144 ORTHO05D002170 6.1e-06 54.7 61 49.2
SGA_v2.0_scaffold80G25892 Striga asiatica HOM05D002144 ORTHO05D002170 6.1e-06 54.7 31 71.0
SGA_v2.0_scaffold81G26097 Striga asiatica HOM05D002144 ORTHO05D002170 6.1e-06 54.7 68 45.6
Cpa.g.sc327.9 Carica papaya HOM05D002144 ORTHO05D002170 7.9e-06 54.3 31 71.0
GSVIVG01031183001 Vitis vinifera HOM05D002144 ORTHO05D002170 7.9e-06 54.3 87 40.2


User provided reference genes

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