Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.01G213900 Carya illinoinensis HOM05D005068 ORTHO05D007561 0.0e+00 1911.0 1065 100.0
Cfa003490 Carpinus fangiana HOM05D005068 ORTHO05D007561 0.0e+00 1392.5 1056 75.4
QL05p001958 Quercus lobata HOM05D005068 ORTHO05D007561 0.0e+00 1391.3 1063 77.0
Haze_16103 Corylus avellana HOM05D005068 ORTHO05D007561 0.0e+00 1339.7 1186 68.0
Manes.09G018800 Manihot esculenta HOM05D005068 ORTHO05D007561 0.0e+00 1271.5 1065 68.8
MD09G1175700 Malus domestica HOM05D005068 ORTHO05D007561 0.0e+00 1245.7 1086 66.1
TAR628G1511 Trochodendron aralioides HOM05D005068 ORTHO05D007561 0.0e+00 1243.0 1053 68.2
CSS0009347 Camellia sinensis var. sinensis HOM05D005068 ORTHO05D007561 0.0e+00 1240.7 1053 67.7
MD17G1151100 Malus domestica HOM05D005068 ORTHO05D007561 0.0e+00 1239.6 1067 67.2
CSS0048439 Camellia sinensis var. sinensis HOM05D005068 ORTHO05D007561 0.0e+00 1234.2 1053 67.4
Sed0017975 Sechium edule HOM05D005068 ORTHO05D007561 0.0e+00 1228.4 1059 67.1
GSVIVG01016696001 Vitis vinifera HOM05D005068 ORTHO05D007561 0.0e+00 1208.7 1075 65.0
Potri.001G164100 Populus trichocarpa HOM05D005068 ORTHO05D007561 0.0e+00 1203.3 1070 67.3
RcHm_v2.0_Chr2g0147011 Rosa chinensis HOM05D005068 ORTHO05D007561 0.0e+00 1201.8 1062 66.7
Prupe.3G034700 Prunus persica HOM05D005068 ORTHO05D007561 0.0e+00 1198.3 1050 67.3
Sed0003275 Sechium edule HOM05D005068 ORTHO05D007561 0.0e+00 1191.8 1066 66.0
Phvul.010G125200 Phaseolus vulgaris HOM05D005068 ORTHO05D007561 0.0e+00 1188.3 1062 65.5
Atru.chr1.4129 Acer truncatum HOM05D005068 ORTHO05D007561 0.0e+00 1184.5 1066 67.4
Glyma.07G043700 Glycine max HOM05D005068 ORTHO05D007561 0.0e+00 1181.0 1055 64.5
FAN05G3041 Fragaria x ananassa HOM05D005068 ORTHO05D007561 0.0e+00 1179.9 1058 66.2
Gorai.011G056800 Gossypium raimondii HOM05D005068 ORTHO05D007561 0.0e+00 1178.3 1059 66.9
CsaV3_7G034120 Cucumis sativus L. HOM05D005068 ORTHO05D007561 0.0e+00 1176.8 1067 65.2
Gohir.D10G053200 Gossypium hirsutum HOM05D005068 ORTHO05D007561 0.0e+00 1174.5 1059 66.8
Ciclev10024779m.g Citrus clementina HOM05D005068 ORTHO05D007561 0.0e+00 1168.7 1059 65.1
VMungo0331G1431 Vigna mungo HOM05D005068 ORTHO05D007561 0.0e+00 1166.4 1060 64.2
Lalb_Chr04g0253821 Lupinus albus HOM05D005068 ORTHO05D007561 0.0e+00 1164.1 937 68.4
MELO3C024322.2 Cucumis melo HOM05D005068 ORTHO05D007561 0.0e+00 1160.2 1070 64.1
arahy.Tifrunner.gnm1.ann1.JS5XG8 Arachis hypogaea HOM05D005068 ORTHO05D007561 0.0e+00 1157.1 1065 62.8
TWI59G1220 Tripterygium wilfordii HOM05D005068 ORTHO05D007561 0.0e+00 1154.4 1080 65.3
Sabra01G0128700 Salix brachista HOM05D005068 ORTHO05D007561 0.0e+00 1147.5 1063 66.3
FAN14G5424 Fragaria x ananassa HOM05D005068 ORTHO05D007561 0.0e+00 1145.6 1063 64.1
FvH4_6g35460 Fragaria vesca HOM05D005068 ORTHO05D007561 0.0e+00 1140.9 1057 63.9
Gohir.A10G051500 Gossypium hirsutum HOM05D005068 ORTHO05D007561 0.0e+00 1138.6 1058 64.7
CANSAT01G1537 Cannabis sativa HOM05D005068 ORTHO05D007561 0.0e+00 1136.7 1073 64.0
Lj3g0023295 Lotus japonicus HOM05D005068 ORTHO05D007561 0.0e+00 1136.7 1057 63.4
Cpa.g.sc25.173 Carica papaya HOM05D005068 ORTHO05D007561 0.0e+00 1132.9 1087 61.6
Psat2g016360 Pisum sativum HOM05D005068 ORTHO05D007561 0.0e+00 1131.3 1072 62.4
Medtr4g119670 Medicago truncatula HOM05D005068 ORTHO05D007561 0.0e+00 1118.2 1054 62.5
Medtr5g019130 Medicago truncatula HOM05D005068 ORTHO05D007561 0.0e+00 1116.7 1062 63.2
PGR102G2847 Punica granatum HOM05D005068 ORTHO05D007561 0.0e+00 1113.6 1061 63.5
Eucgr.J02606 Eucalyptus grandis HOM05D005068 ORTHO05D007561 0.0e+00 1112.8 1075 62.3
Aqoxy1G00349 Aquilegia oxysepala HOM05D005068 ORTHO05D007561 0.0e+00 1106.7 1057 62.4
Ca_23422_v3 Cicer arietinum L. HOM05D005068 ORTHO05D007561 0.0e+00 1104.0 1066 62.6
Solyc03g123530.4 Solanum lycopersicum HOM05D005068 ORTHO05D007561 0.0e+00 1101.7 1051 61.8
PSO384G5027 Papaver somniferum HOM05D005068 ORTHO05D007561 0.0e+00 1096.6 1079 61.4
TPR.G16658 Trifolium pratense HOM05D005068 ORTHO05D007561 0.0e+00 1096.6 1083 61.4
Thecc.06G127400 Theobroma cacao HOM05D005068 ORTHO05D007561 0.0e+00 1095.5 1072 63.1
Hund18654 Selenicereus undatus HOM05D005068 ORTHO05D007561 0.0e+00 1094.7 1074 62.5
CAN.G790.67 Capsicum annuum HOM05D005068 ORTHO05D007561 0.0e+00 1085.5 1052 61.6
Glyma.16G012100 Glycine max HOM05D005068 ORTHO05D007561 0.0e+00 1083.6 1047 61.1
ClCG09G001250 Citrullus lanatus HOM05D005068 ORTHO05D007561 0.0e+00 1083.2 1070 62.1
PSO339G5314 Papaver somniferum HOM05D005068 ORTHO05D007561 0.0e+00 1077.4 1079 61.1
Oeu000383.1 Olea europaea HOM05D005068 ORTHO05D007561 0.0e+00 1076.2 1038 61.0
FAN09G4827 Fragaria x ananassa HOM05D005068 ORTHO05D007561 0.0e+00 1075.5 1063 61.2
Rhsim08G0242500 Rhododendron simsii HOM05D005068 ORTHO05D007561 1.2e-309 1066.6 1050 61.9
Peaxi162Scf00038g02247 Petunia axillaris HOM05D005068 ORTHO05D007561 2.1e-309 1065.8 1058 60.2
Nitab4.5_0003981g0040 Nicotiana tabacum HOM05D005068 ORTHO05D007561 6.7e-308 1060.8 1051 60.4
Sopen03g041300 Solanum pennellii HOM05D005068 ORTHO05D007561 4.8e-306 1054.7 1063 60.1
Cc04_g00890 Coffea canephora HOM05D005068 ORTHO05D007561 2.4e-305 1052.4 1050 59.2
ECA234G0903 Erigeron canadensis HOM05D005068 ORTHO05D007561 5.3e-305 1051.2 1039 59.4
Nitab4.5_0009947g0020 Nicotiana tabacum HOM05D005068 ORTHO05D007561 1.6e-304 1049.7 944 63.8
THA.LOC104808063 Tarenaya hassleriana HOM05D005068 ORTHO05D007561 4.5e-304 1048.1 1091 58.3
arahy.Tifrunner.gnm1.ann1.X03KN2 Arachis hypogaea HOM05D005068 ORTHO05D007561 1.0e-303 1047.0 1062 58.2
Lsat_1_v5_gn_5_136720 Lactuca sativa HOM05D005068 ORTHO05D007561 2.9e-303 1045.4 1050 60.7
HanXRQChr12g0360151 Helianthus annuus HOM05D005068 ORTHO05D007561 3.6e-301 1038.5 1027 60.1
Ca_30848_v3 Cicer arietinum L. HOM05D005068 ORTHO05D007561 5.2e-300 1034.6 895 65.9
EL10Ac7g16459 Beta vulgaris HOM05D005068 ORTHO05D007561 1.4e-297 1026.5 1099 56.9
Peaxi162Scf00535g00325 Petunia axillaris HOM05D005068 ORTHO05D007561 1.8e-297 1026.2 1055 59.1
MSTRG.22527 Avicennia marina HOM05D005068 ORTHO05D007561 4.1e-297 1025.0 1070 59.6
AT1G72440 Arabidopsis thaliana HOM05D005068 ORTHO05D007561 1.3e-295 1020.0 1061 59.5
AL2G32110 Arabidopsis lyrata HOM05D005068 ORTHO05D007561 2.9e-295 1018.8 1000 60.8
Sp5g27520 Schrenkiella parvula HOM05D005068 ORTHO05D007561 1.9e-294 1016.1 1070 58.3
AUR62009935 Chenopodium quinoa HOM05D005068 ORTHO05D007561 4.2e-294 1015.0 1057 58.8
SalBow6G5915 Salvia bowleyana HOM05D005068 ORTHO05D007561 7.2e-294 1014.2 1068 58.5
DCAR_026429 Daucus carota HOM05D005068 ORTHO05D007561 4.0e-292 1008.4 1065 58.9
Nn8g38536 Nelumbo nucifera HOM05D005068 ORTHO05D007561 8.8e-292 1007.3 1060 57.4
AUR62001432 Chenopodium quinoa HOM05D005068 ORTHO05D007561 4.8e-290 1001.5 1070 56.0
Lj5A31T61 Lonicera japonica HOM05D005068 ORTHO05D007561 2.0e-288 996.1 891 64.1
C06p46800 Brassica napus HOM05D005068 ORTHO05D007561 1.2e-285 986.9 1056 57.6
BolC6t39723H Brassica oleracea HOM05D005068 ORTHO05D007561 3.6e-285 985.3 1065 57.2
Thhalv10018056m.g Eutrema salsugineum HOM05D005068 ORTHO05D007561 1.7e-282 976.5 1062 56.8
Carub.0002s1929 Capsella rubella HOM05D005068 ORTHO05D007561 1.1e-281 973.8 951 60.9
BcaB03g14995 Brassica carinata HOM05D005068 ORTHO05D007561 2.4e-281 972.6 1053 58.4
CARHR065370 Cardamine hirsuta HOM05D005068 ORTHO05D007561 3.9e-279 965.3 1068 57.0
Actinidia21819 Actinidia chinensis HOM05D005068 ORTHO05D007561 9.5e-278 960.7 888 63.1
BcaC08g46695 Brassica carinata HOM05D005068 ORTHO05D007561 1.0e-276 957.2 1056 56.4
vmacro15071 Vaccinium macrocarpon HOM05D005068 ORTHO05D007561 3.5e-272 942.2 886 61.1
CDE05G0629 Ceratophyllum demersum HOM05D005068 ORTHO05D007561 1.7e-271 939.9 1051 54.2
Aa31LG4G2770 Aethionema arabicum HOM05D005068 ORTHO05D007561 1.5e-270 936.8 973 58.7
BraA07t31420Z Brassica rapa HOM05D005068 ORTHO05D007561 4.4e-267 925.2 1070 54.5
unitig_26.g8921 Utricularia gibba HOM05D005068 ORTHO05D007561 2.2e-266 922.9 1054 55.0
MBI13_g01677_MAGBIO Magnolia biondii HOM05D005068 ORTHO05D007561 6.0e-264 914.8 922 58.2
HPP92_014041 Vanilla planifolia HOM05D005068 ORTHO05D007561 9.5e-262 907.5 1075 51.5
Os09g0116400 Oryza sativa ssp. japonica HOM05D005068 ORTHO05D007561 6.6e-255 884.8 1051 51.6
ATR0317G028 Amborella trichopoda HOM05D005068 ORTHO05D007561 4.3e-254 882.1 1090 51.6
TAR383G0209 Trochodendron aralioides HOM05D005068 ORTHO05D007561 8.9e-252 874.4 709 71.2
SGA_v2.0_scaffold71G23904 Striga asiatica HOM05D005068 ORTHO05D007561 2.6e-251 872.8 1051 53.3
Nitab4.5_0007072g0030 Nicotiana tabacum HOM05D005068 ORTHO05D007561 1.4e-249 867.1 818 61.6
Zm00001eb008900 Zea mays HOM05D005068 ORTHO05D007561 2.4e-244 849.7 1066 49.9
SEGI_35987 Sequoiadendron giganteum HOM05D005068 ORTHO05D007561 7.6e-235 818.1 1072 49.3
vmacro14086 Vaccinium macrocarpon HOM05D005068 ORTHO05D007561 6.4e-234 815.1 614 71.2
COL.COLO4_30833 Corchorus olitorius HOM05D005068 ORTHO05D007561 2.5e-214 750.0 623 67.3
FAN02G4153 Fragaria x ananassa HOM05D005068 ORTHO05D007561 3.3e-214 749.6 651 65.3
Migut.I01119 Erythranthe guttata HOM05D005068 ORTHO05D007561 8.2e-213 745.0 1053 48.6
SHI38508 Sapria himalayana HOM05D005068 ORTHO05D007561 1.0e-194 684.9 1038 44.6
Pp3c8_7540 Physcomitrium patens HOM05D005068 ORTHO05D007561 6.3e-189 665.6 1161 40.5
AagrBONN_evm.TU.Sc2ySwM_228.3616 Anthoceros agrestis HOM05D005068 ORTHO05D007561 4.1e-188 662.9 955 42.8
Mapoly0001s0039 Marchantia polymorpha HOM05D005068 ORTHO05D007561 7.2e-177 625.5 1054 41.7
A07p38620 Brassica napus HOM05D005068 ORTHO05D007561 1.3e-170 604.7 594 59.6
Sc12g0010810 Simmondsia chinensis HOM05D005068 ORTHO05D007561 8.6e-170 602.1 765 51.5
PGSC0003DMG400009145 Solanum tuberosum HOM05D005068 ORTHO05D007561 1.1e-169 601.7 585 61.2
ECA234G3781 Erigeron canadensis HOM05D005068 ORTHO05D007561 1.2e-168 598.2 894 44.1
Dinv37834 Davidia involucrata HOM05D005068 ORTHO05D007561 1.2e-166 591.7 532 66.2
CDE11G1047 Ceratophyllum demersum HOM05D005068 ORTHO05D007561 1.6e-155 554.7 642 51.7
CBR_g4353 Chara braunii HOM05D005068 ORTHO05D007561 7.8e-155 552.4 915 40.1
Dinv37835 Davidia involucrata HOM05D005068 ORTHO05D007561 3.1e-143 513.8 357 75.1
SMO356G0436 Selaginella moellendorffii HOM05D005068 ORTHO05D007561 6.4e-133 479.6 946 37.2
Cre10.g459600 Chlamydomonas reinhardtii HOM05D005068 ORTHO05D007561 1.3e-104 385.6 886 35.4
Haze_25369 Corylus avellana HOM05D005068 ORTHO05D007561 1.0e-101 375.9 634 44.2
CDE11G0362 Ceratophyllum demersum HOM05D005068 ORTHO05D007561 4.3e-97 360.5 387 55.6
TAR383G0400 Trochodendron aralioides HOM05D005068 ORTHO05D007561 5.7e-89 333.6 419 49.4
PRCOL_00007240 Prasinoderma coloniale HOM05D005068 ORTHO05D007561 1.7e-77 295.4 792 33.2
SHI25215 Sapria himalayana HOM05D005068 ORTHO05D007561 6.7e-74 283.5 584 39.9
Cfa026526 Carpinus fangiana HOM05D005068 ORTHO05D007561 7.7e-62 243.4 898 29.0
Cc00_g06320 Coffea canephora HOM05D005068 ORTHO05D007561 1.5e-60 239.2 212 64.2
Psat7g194920 Pisum sativum HOM05D005068 ORTHO05D030493 2.0e-57 228.8 230 58.7
FAN23G2170 Fragaria x ananassa HOM05D005068 ORTHO05D007561 3.1e-55 221.5 184 66.8
MSTRG.13912 Avicennia marina HOM05D005068 ORTHO05D019833 2.3e-53 215.3 253 58.1
vmacro14085 Vaccinium macrocarpon HOM05D005068 ORTHO05D007561 1.9e-52 212.2 259 52.1
Lj5C31T11 Lonicera japonica HOM05D005068 ORTHO05D019833 7.8e-38 163.7 212 59.0
Hund18058 Selenicereus undatus HOM05D005068 ORTHO05D030493 1.4e-34 152.9 172 54.7
Psat7g194960 Pisum sativum HOM05D005068 ORTHO05D030493 8.3e-32 143.7 170 51.2
Psat4g066440 Pisum sativum HOM05D005068 ORTHO05D030493 1.6e-30 139.4 119 65.5
vmacro15070 Vaccinium macrocarpon HOM05D005068 ORTHO05D019833 1.3e-29 136.3 201 52.2
HanXRQChr04g0122031 Helianthus annuus HOM05D005068 ORTHO05D007561 8.1e-27 127.1 132 57.6
Sc16g0005210 Simmondsia chinensis HOM05D005068 ORTHO05D019833 9.9e-25 120.2 203 48.8
Zm00001eb239840 Zea mays HOM05D001561 ORTHO05D001715 2.8e-19 102.1 109 50.5
Sc16g0005100 Simmondsia chinensis HOM05D005068 ORTHO05D014954 6.2e-19 100.9 58 81.0
COL.COLO4_30832 Corchorus olitorius HOM05D005068 ORTHO05D014954 1.4e-18 99.8 51 92.2
ECA233G2064 Erigeron canadensis HOM05D005068 ORTHO05D007561 9.9e-17 93.6 81 60.5
Sc16g0005200 Simmondsia chinensis HOM05D005068 ORTHO05D019833 1.2e-09 70.1 131 42.7
C04p42190 Brassica napus HOM05D014151 ORTHO05D014954 1.9e-07 62.8 42 66.7
C09p50490 Brassica napus HOM05D014151 ORTHO05D014954 1.9e-07 62.8 42 66.7
Psat7g258920 Pisum sativum HOM05D002153 ORTHO05D002137 3.2e-07 62.0 50 60.0
Psat1g211080 Pisum sativum HOM05D000001 ORTHO05D322910 4.2e-07 61.6 46 65.2
Psat4g213600 Pisum sativum HOM05D002050 ORTHO05D001949 4.2e-07 61.6 48 64.6
Psat3g173480 Pisum sativum HOM05D002362 ORTHO05D002465 5.4e-07 61.2 44 68.2
C03p21460 Brassica napus HOM05D014151 ORTHO05D014954 7.1e-07 60.8 42 64.3
BolC3t14532H Brassica oleracea HOM05D014151 ORTHO05D014954 7.1e-07 60.8 42 64.3
Sc16g0005110 Simmondsia chinensis HOM05D060119 ORTHO05D019833 7.1e-07 60.8 111 46.8
BcaC09g47952 Brassica carinata HOM05D014151 ORTHO05D014954 1.6e-06 59.7 42 61.9
Psat3g037200 Pisum sativum HOM05D001007 ORTHO05D012393 7.9e-06 57.4 47 59.6


User provided reference genes

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