Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.01G212300 Carya illinoinensis HOM05D004219 ORTHO05D004857 0.0e+00 1596.3 780 100.0
Cfa003467 Carpinus fangiana HOM05D004219 ORTHO05D004857 0.0e+00 1409.8 781 87.6
CiPaw.02G131700 Carya illinoinensis HOM05D004219 ORTHO05D004857 0.0e+00 1406.3 781 87.8
QL05p001749 Quercus lobata HOM05D004219 ORTHO05D004857 0.0e+00 1395.2 779 87.0
QL05p001473 Quercus lobata HOM05D004219 ORTHO05D004857 0.0e+00 1389.4 779 86.8
Haze_16129 Corylus avellana HOM05D004219 ORTHO05D004857 0.0e+00 1267.7 824 77.1
Prupe.3G031800 Prunus persica HOM05D004219 ORTHO05D004857 0.0e+00 1261.1 786 78.2
CANSAT56G2968 Cannabis sativa HOM05D004219 ORTHO05D004857 0.0e+00 1246.5 781 78.1
MD09G1173700 Malus domestica HOM05D004219 ORTHO05D004857 0.0e+00 1243.8 786 78.0
MD17G1153300 Malus domestica HOM05D004219 ORTHO05D004857 0.0e+00 1242.3 785 77.6
Dinv20389 Davidia involucrata HOM05D004219 ORTHO05D004857 0.0e+00 1234.6 777 78.0
RcHm_v2.0_Chr2g0147711 Rosa chinensis HOM05D004219 ORTHO05D004857 0.0e+00 1225.3 786 76.2
FAN09G1853 Fragaria x ananassa HOM05D004219 ORTHO05D004857 0.0e+00 1217.6 786 76.2
FvH4_6g35710 Fragaria vesca HOM05D004219 ORTHO05D004857 0.0e+00 1215.7 786 76.1
FAN14G4832 Fragaria x ananassa HOM05D004219 ORTHO05D004857 0.0e+00 1215.7 786 76.1
FAN02G2730 Fragaria x ananassa HOM05D004219 ORTHO05D004857 0.0e+00 1205.7 786 75.2
Glyma.07G045100 Glycine max HOM05D004219 ORTHO05D004857 0.0e+00 1200.7 786 74.7
Glyma.16G013100 Glycine max HOM05D004219 ORTHO05D004857 0.0e+00 1199.1 786 74.6
GSVIVG01016680001 Vitis vinifera HOM05D004219 ORTHO05D004857 0.0e+00 1185.6 769 75.8
CSS0038823 Camellia sinensis var. sinensis HOM05D004219 ORTHO05D004857 0.0e+00 1181.8 777 76.1
Actinidia21828 Actinidia chinensis HOM05D004219 ORTHO05D004857 0.0e+00 1179.9 771 75.4
CSS0000587 Camellia sinensis var. sinensis HOM05D004219 ORTHO05D004857 0.0e+00 1179.5 777 75.9
TAR383G0549 Trochodendron aralioides HOM05D004219 ORTHO05D004857 0.0e+00 1179.5 781 73.6
Nn6g35715 Nelumbo nucifera HOM05D004219 ORTHO05D004857 0.0e+00 1178.7 785 73.5
TAR624G1175 Trochodendron aralioides HOM05D004219 ORTHO05D004857 0.0e+00 1178.7 798 73.8
Phvul.010G123900 Phaseolus vulgaris HOM05D004219 ORTHO05D004857 0.0e+00 1171.0 786 73.5
Cc04_g00810 Coffea canephora HOM05D004219 ORTHO05D004857 0.0e+00 1159.1 775 72.9
TPR.G18148 Trifolium pratense HOM05D004219 ORTHO05D004857 0.0e+00 1158.7 789 72.8
Ca_23428_v3 Cicer arietinum L. HOM05D004219 ORTHO05D004857 0.0e+00 1144.4 789 71.5
vmacro15080 Vaccinium macrocarpon HOM05D004219 ORTHO05D004857 0.0e+00 1140.2 788 72.0
Rhsim08G0243800 Rhododendron simsii HOM05D004219 ORTHO05D004857 0.0e+00 1138.3 802 71.1
Lalb_Chr17g0343311 Lupinus albus HOM05D004219 ORTHO05D004857 0.0e+00 1136.3 783 71.0
Psat4g165840 Pisum sativum HOM05D004219 ORTHO05D004857 0.0e+00 1136.3 790 71.3
Peaxi162Scf00177g00619 Petunia axillaris HOM05D004219 ORTHO05D004857 0.0e+00 1135.9 774 72.1
Lj3g0000905 Lotus japonicus HOM05D004219 ORTHO05D004857 0.0e+00 1132.9 786 71.6
VMungo0331G1133 Vigna mungo HOM05D004219 ORTHO05D004857 0.0e+00 1132.5 786 71.0
Medtr8g022980 Medicago truncatula HOM05D004219 ORTHO05D004857 0.0e+00 1130.2 781 71.6
Nitab4.5_0000357g0090 Nicotiana tabacum HOM05D004219 ORTHO05D004857 0.0e+00 1129.0 775 71.6
MBI13_g01684_MAGBIO Magnolia biondii HOM05D004219 ORTHO05D004857 0.0e+00 1123.6 780 71.0
Nitab4.5_0004589g0030 Nicotiana tabacum HOM05D004219 ORTHO05D004857 0.0e+00 1121.7 774 71.6
CAN.G1721.2 Capsicum annuum HOM05D004219 ORTHO05D004857 0.0e+00 1121.3 773 71.4
PGSC0003DMG400028852 Solanum tuberosum HOM05D004219 ORTHO05D004857 0.0e+00 1121.3 772 71.5
Sopen12g024040 Solanum pennellii HOM05D004219 ORTHO05D004857 0.0e+00 1120.9 773 71.5
Sed0001277 Sechium edule HOM05D004219 ORTHO05D004857 0.0e+00 1120.1 787 69.0
Ciclev10007563m.g Citrus clementina HOM05D004219 ORTHO05D004857 0.0e+00 1116.3 770 71.7
Solyc12g049570.3 Solanum lycopersicum HOM05D004219 ORTHO05D004857 0.0e+00 1115.5 773 71.2
Thecc.09G069400 Theobroma cacao HOM05D004219 ORTHO05D004857 0.0e+00 1115.1 771 72.1
Lalb_Chr04g0253891 Lupinus albus HOM05D004219 ORTHO05D004857 0.0e+00 1114.0 784 70.7
Manes.16G089900 Manihot esculenta HOM05D004219 ORTHO05D004857 0.0e+00 1112.4 773 71.3
Lj5A30T66 Lonicera japonica HOM05D004219 ORTHO05D004857 0.0e+00 1111.3 759 72.3
Manes.03G045300 Manihot esculenta HOM05D004219 ORTHO05D004857 0.0e+00 1110.5 770 70.3
CsaV3_3G030980 Cucumis sativus L. HOM05D004219 ORTHO05D004857 0.0e+00 1109.4 784 69.9
QL11p003182 Quercus lobata HOM05D004219 ORTHO05D004857 0.0e+00 1109.0 781 70.7
Potri.006G135500 Populus trichocarpa HOM05D004219 ORTHO05D004857 0.0e+00 1108.2 771 71.3
MELO3C022696.2 Cucumis melo HOM05D004219 ORTHO05D004857 0.0e+00 1107.0 784 69.9
Duzib187G1712 Durio zibethinus HOM05D004219 ORTHO05D004857 0.0e+00 1105.9 771 71.3
TWI63G0110 Tripterygium wilfordii HOM05D004219 ORTHO05D004857 0.0e+00 1101.7 771 70.8
Cpa.g.sc82.51 Carica papaya HOM05D004219 ORTHO05D004857 0.0e+00 1099.7 769 70.1
DCAR_016092 Daucus carota HOM05D004219 ORTHO05D004857 0.0e+00 1099.3 772 69.7
Duzib150G0120 Durio zibethinus HOM05D004219 ORTHO05D004857 0.0e+00 1099.0 776 70.5
Duzib168G0770 Durio zibethinus HOM05D004219 ORTHO05D004857 0.0e+00 1097.0 771 71.1
Sabra18G0057200 Salix brachista HOM05D004219 ORTHO05D004857 0.0e+00 1097.0 775 70.8
TWI34G1001 Tripterygium wilfordii HOM05D004219 ORTHO05D004857 0.0e+00 1090.1 771 70.0
Sed0013084 Sechium edule HOM05D004219 ORTHO05D004857 0.0e+00 1087.8 780 68.8
Oeu059024.1 Olea europaea HOM05D004219 ORTHO05D004857 0.0e+00 1085.5 776 69.3
Aqoxy7G00940 Aquilegia oxysepala HOM05D004219 ORTHO05D004857 0.0e+00 1083.9 781 69.7
Potri.018G064500 Populus trichocarpa HOM05D004219 ORTHO05D004857 0.0e+00 1083.2 775 70.1
Gohir.A07G017500 Gossypium hirsutum HOM05D004219 ORTHO05D004857 0.0e+00 1082.4 771 70.0
Gorai.001G018000 Gossypium raimondii HOM05D004219 ORTHO05D004857 0.0e+00 1082.0 771 70.2
GSVIVG01015005001 Vitis vinifera HOM05D004219 ORTHO05D004857 0.0e+00 1081.6 769 70.6
Eucgr.C00764 Eucalyptus grandis HOM05D004219 ORTHO05D004857 0.0e+00 1079.7 770 69.5
Gorai.010G095800 Gossypium raimondii HOM05D004219 ORTHO05D004857 1.4e-310 1069.3 773 69.7
PSO724G0293 Papaver somniferum HOM05D004219 ORTHO05D004857 1.2e-309 1066.2 783 67.9
Hund05707 Selenicereus undatus HOM05D004219 ORTHO05D004857 1.2e-309 1066.2 785 67.4
ClCG09G001310 Citrullus lanatus HOM05D004219 ORTHO05D004857 4.5e-309 1064.3 790 68.1
CsaV3_7G034010 Cucumis sativus L. HOM05D004219 ORTHO05D004857 2.2e-308 1062.0 790 68.0
Sc15g0000780 Simmondsia chinensis HOM05D004219 ORTHO05D004857 5.5e-307 1057.4 781 67.3
PSO135G0149 Papaver somniferum HOM05D004219 ORTHO05D004857 7.1e-307 1057.0 782 67.3
Gorai.009G038600 Gossypium raimondii HOM05D004219 ORTHO05D004857 4.6e-306 1054.3 770 67.9
ClCG07G014320 Citrullus lanatus HOM05D004219 ORTHO05D004857 6.7e-305 1050.4 758 69.0
Migut.I01126 Erythranthe guttata HOM05D004219 ORTHO05D004857 2.5e-304 1048.5 778 66.3
Gohir.D05G038100 Gossypium hirsutum HOM05D004219 ORTHO05D004857 3.3e-304 1048.1 770 67.8
Gohir.A05G036600 Gossypium hirsutum HOM05D004219 ORTHO05D004857 9.6e-304 1046.6 769 67.4
Gohir.A06G084100 Gossypium hirsutum HOM05D004219 ORTHO05D004857 1.6e-303 1045.8 772 68.9
Sed0013718 Sechium edule HOM05D004219 ORTHO05D004857 4.0e-302 1041.2 790 65.8
AUR62025624 Chenopodium quinoa HOM05D004219 ORTHO05D004857 7.6e-301 1036.9 823 63.5
Lalb_Chr08g0232811 Lupinus albus HOM05D004219 ORTHO05D004857 7.6e-301 1036.9 772 65.9
Gohir.D06G082300 Gossypium hirsutum HOM05D004219 ORTHO05D004857 4.6e-298 1027.7 773 67.8
HanXRQChr09g0277221 Helianthus annuus HOM05D004219 ORTHO05D004857 2.3e-297 1025.4 758 67.9
EL10Ac7g16483 Beta vulgaris HOM05D004219 ORTHO05D004857 1.3e-295 1019.6 781 65.7
Glyma.U031325 Glycine max HOM05D004219 ORTHO05D004857 1.6e-295 1019.2 773 65.6
Lj6g0016067 Lotus japonicus HOM05D004219 ORTHO05D004857 2.1e-295 1018.8 774 67.1
Glyma.09G074300 Glycine max HOM05D004219 ORTHO05D004857 2.8e-295 1018.5 773 66.0
VMungo1309G2772 Vigna mungo HOM05D004219 ORTHO05D004857 1.1e-294 1016.5 774 65.5
ATR0099G075 Amborella trichopoda HOM05D004219 ORTHO05D004857 1.8e-294 1015.8 816 63.7
Medtr2g044550 Medicago truncatula HOM05D004219 ORTHO05D004857 3.1e-294 1015.0 777 65.8
Phvul.009G223200 Phaseolus vulgaris HOM05D004219 ORTHO05D004857 1.5e-293 1012.7 773 65.5
PGR142G3683 Punica granatum HOM05D004219 ORTHO05D004857 1.0e-292 1010.0 771 65.5
Lalb_Chr23g0276141 Lupinus albus HOM05D004219 ORTHO05D004857 1.3e-292 1009.6 772 64.8
ECA232G2871 Erigeron canadensis HOM05D004219 ORTHO05D004857 1.1e-291 1006.5 774 66.0
Cfa002934 Carpinus fangiana HOM05D004219 ORTHO05D004857 4.2e-291 1004.6 741 68.3
Sp5g18450 Schrenkiella parvula HOM05D004219 ORTHO05D004857 4.6e-290 1001.1 769 64.0
Gohir.D07G017300 Gossypium hirsutum HOM05D004219 ORTHO05D004857 6.7e-289 997.3 771 65.9
Carub.0005s0906 Capsella rubella HOM05D004219 ORTHO05D004857 7.4e-288 993.8 777 63.3
AT3G43240 Arabidopsis thaliana HOM05D004219 ORTHO05D004857 1.6e-287 992.6 777 63.1
AL5G21340 Arabidopsis lyrata HOM05D004219 ORTHO05D004857 4.8e-287 991.1 771 63.3
Thhalv10002415m.g Eutrema salsugineum HOM05D004219 ORTHO05D004857 1.1e-286 989.9 770 63.1
TAR626G0374 Trochodendron aralioides HOM05D004219 ORTHO05D004857 1.4e-286 989.6 767 65.4
CARHR153440 Cardamine hirsuta HOM05D004219 ORTHO05D004857 4.1e-286 988.0 776 63.3
BcaC01g02109 Brassica carinata HOM05D004219 ORTHO05D004857 4.2e-283 978.0 772 63.1
TPR.G26875 Trifolium pratense HOM05D004219 ORTHO05D004857 9.4e-283 976.9 778 63.9
A06p22640 Brassica napus HOM05D004219 ORTHO05D004857 2.7e-282 975.3 773 62.5
THA.LOC104799604 Tarenaya hassleriana HOM05D004219 ORTHO05D004857 2.7e-282 975.3 780 63.5
Aqoxy7G04168 Aquilegia oxysepala HOM05D004219 ORTHO05D004857 4.6e-282 974.5 766 63.3
CDE04G3533 Ceratophyllum demersum HOM05D004219 ORTHO05D004857 1.8e-281 972.6 780 62.9
HPP92_019289 Vanilla planifolia HOM05D004219 ORTHO05D004857 1.8e-281 972.6 780 61.5
Hma1.2p1_0229F.1_g097030 Hydrangea macrophylla HOM05D004219 ORTHO05D004857 6.7e-281 970.7 718 68.4
BcaB01g01229 Brassica carinata HOM05D004219 ORTHO05D004857 8.8e-281 970.3 774 63.0
MELO3C024313.2 Cucumis melo HOM05D004219 ORTHO05D004857 1.1e-280 969.9 776 64.4
BolC3t19092H Brassica oleracea HOM05D004219 ORTHO05D004857 4.1e-278 961.4 776 62.5
Ah.08g217310 Amaranthus hybridus HOM05D004219 ORTHO05D004857 6.1e-274 947.6 779 61.7
Ca_02284_v3 Cicer arietinum L. HOM05D004219 ORTHO05D004857 1.8e-270 936.0 781 62.5
Zm00001eb313820 Zea mays HOM05D004219 ORTHO05D004857 3.1e-270 935.3 785 60.6
Haze_26074 Corylus avellana HOM05D004219 ORTHO05D004857 9.1e-270 933.7 854 58.5
Aa31LG4G12950 Aethionema arabicum HOM05D004219 ORTHO05D004857 2.0e-269 932.6 787 59.7
COL.COLO4_21198 Corchorus olitorius HOM05D004219 ORTHO05D004857 5.5e-267 924.5 770 62.3
Zm00001eb099960 Zea mays HOM05D004219 ORTHO05D004857 6.1e-266 921.0 788 60.3
PGR044G2279 Punica granatum HOM05D004219 ORTHO05D004857 4.0e-265 918.3 779 61.4
unitig_26.g8917 Utricularia gibba HOM05D004219 ORTHO05D004857 3.5e-261 905.2 775 59.7
SGA_v2.0_scaffold71G23915 Striga asiatica HOM05D004219 ORTHO05D004857 4.7e-258 894.8 769 59.9
Os08g0451400 Oryza sativa ssp. japonica HOM05D004219 ORTHO05D004857 1.4e-257 893.3 767 58.5
Lsat_1_v5_gn_4_92081 Lactuca sativa HOM05D004219 ORTHO05D004857 8.8e-257 890.6 725 64.4
arahy.Tifrunner.gnm1.ann1.82J223 Arachis hypogaea HOM05D004219 ORTHO05D004857 6.5e-252 874.4 775 58.8
arahy.Tifrunner.gnm1.ann1.BBC6WZ Arachis hypogaea HOM05D004219 ORTHO05D004857 3.2e-251 872.1 775 58.8
Eucgr.I02158 Eucalyptus grandis HOM05D004219 ORTHO05D004857 6.8e-249 864.4 758 60.3
Sabra06G0106200 Salix brachista HOM05D004219 ORTHO05D004857 5.4e-238 828.2 703 63.0
AUR62001416 Chenopodium quinoa HOM05D004219 ORTHO05D004857 8.3e-231 804.3 740 56.8
Psat1g137920 Pisum sativum HOM05D004219 ORTHO05D004857 1.6e-226 790.0 681 60.2
Mapoly0094s0004 Marchantia polymorpha HOM05D004219 ORTHO05D004857 4.8e-186 655.6 761 46.0
Actinidia24435 Actinidia chinensis HOM05D004219 ORTHO05D004857 2.0e-184 650.2 769 48.2
arahy.Tifrunner.gnm1.ann1.B45F8N Arachis hypogaea HOM05D004219 ORTHO05D004857 6.7e-180 635.2 398 75.6
arahy.Tifrunner.gnm1.ann1.W70I1I Arachis hypogaea HOM05D004219 ORTHO05D004857 6.7e-180 635.2 398 75.6
Zm00001eb040700 Zea mays HOM05D004219 ORTHO05D004857 1.6e-178 630.6 760 45.9
Pp3c15_1350 Physcomitrium patens HOM05D004219 ORTHO05D004857 2.4e-177 626.7 782 43.6
SMO133G0025 Selaginella moellendorffii HOM05D004219 ORTHO05D004857 3.2e-174 616.3 800 45.2
BraA06t25350Z Brassica rapa HOM05D004219 ORTHO05D004857 3.9e-172 609.4 438 66.9
Pp3c6_26590 Physcomitrium patens HOM05D004219 ORTHO05D004857 2.5e-171 606.7 796 43.1
Atru.chr7.1780 Acer truncatum HOM05D004219 ORTHO05D004857 3.0e-164 583.2 421 69.8
SEGI_01121 Sequoiadendron giganteum HOM05D004219 ORTHO05D004857 7.7e-152 542.0 792 40.4
unitig_749.g14037 Utricularia gibba HOM05D004219 ORTHO05D004857 5.5e-150 535.8 397 67.0
AagrBONN_evm.TU.Sc2ySwM_344.4361 Anthoceros agrestis HOM05D004219 ORTHO05D004857 2.4e-137 493.8 563 47.2
Atru.chr7.1779 Acer truncatum HOM05D004219 ORTHO05D004857 1.3e-135 488.0 271 83.4
CDE06G0638 Ceratophyllum demersum HOM05D004219 ORTHO05D004857 1.5e-131 474.6 469 55.2
CDE06G2764 Ceratophyllum demersum HOM05D004219 ORTHO05D004857 5.8e-115 419.5 255 75.3
Os08g0451700 Oryza sativa ssp. japonica HOM05D004219 ORTHO05D004857 3.2e-113 413.7 471 47.1
CBR_g66811 Chara braunii HOM05D004219 ORTHO05D004857 6.2e-101 372.9 745 33.6
Os09g0434100 Oryza sativa ssp. japonica HOM05D004219 ORTHO05D004857 2.2e-74 284.6 280 54.3
Cre10.g429880 Chlamydomonas reinhardtii HOM05D004219 ORTHO05D004857 3.2e-65 254.2 750 28.5
Medtr8g038730 Medicago truncatula HOM05D004219 ORTHO05D004857 2.7e-64 251.1 189 65.1
unitig_749.g14036 Utricularia gibba HOM05D004219 ORTHO05D004857 1.8e-63 248.4 289 47.8
Nn5g27342 Nelumbo nucifera HOM05D004219 ORTHO05D004857 2.0e-51 208.4 153 68.6
TAR383G0322 Trochodendron aralioides HOM05D004219 ORTHO05D004857 1.7e-45 188.7 150 67.3
Os09g0434000 Oryza sativa ssp. japonica HOM05D004219 ORTHO05D004857 3.5e-43 181.0 90 84.4
FAN05G1825 Fragaria x ananassa HOM05D004219 ORTHO05D004857 4.5e-35 154.1 76 86.8
Os08g0361000 Oryza sativa ssp. japonica HOM05D004219 ORTHO05D004857 1.4e-23 115.9 172 37.8
Os08g0451500 Oryza sativa ssp. japonica HOM05D004219 ORTHO05D004857 4.4e-22 110.9 142 39.4
AUR62025956 Chenopodium quinoa HOM05D000121 ORTHO05D024978 1.8e-12 79.0 93 48.4
MCO07G528 Micromonas commoda HOM05D004219 ORTHO05D004857 4.1e-12 77.8 103 39.8
BolSC21t60256H Brassica oleracea HOM05D020425 ORTHO05D021983 2.9e-10 71.6 46 71.7
Oeu028234.1 Olea europaea HOM05D004219 ORTHO05D004857 6.6e-10 70.5 90 41.1
C03p67880 Brassica napus HOM05D020425 ORTHO05D021983 1.6e-08 65.9 39 71.8


User provided reference genes

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