Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.01G211000 Carya illinoinensis HOM05D008031 ORTHO05D010063 4.6e-94 347.8 167 100.0
QL05p000882 Quercus lobata HOM05D008031 ORTHO05D010063 1.0e-61 240.4 166 74.1
QL05p001111 Quercus lobata HOM05D008031 ORTHO05D010063 1.0e-61 240.4 166 74.1
CiPaw.02G130600 Carya illinoinensis HOM05D008031 ORTHO05D010063 1.5e-57 226.5 171 71.3
Haze_16140 Corylus avellana HOM05D001728 ORTHO05D004321 1.9e-52 209.5 168 64.9
Cfa003457 Carpinus fangiana HOM05D008031 ORTHO05D010063 2.2e-48 196.1 168 61.3
Manes.04G151400 Manihot esculenta HOM05D008031 ORTHO05D010063 6.0e-46 188.0 167 59.3
Potri.001G162100 Populus trichocarpa HOM05D008031 ORTHO05D010063 1.3e-43 180.3 166 56.0
Atru.chr1.4161 Acer truncatum HOM05D008031 ORTHO05D010063 8.2e-43 177.6 169 58.0
Prupe.3G030600 Prunus persica HOM05D008031 ORTHO05D010063 4.5e-41 171.8 166 54.2
Atru.chr1.4165 Acer truncatum HOM05D008031 ORTHO05D010063 2.9e-40 169.1 169 55.6
GSVIVG01016662001 Vitis vinifera HOM05D008031 ORTHO05D010063 5.5e-39 164.9 166 54.8
Actinidia21841 Actinidia chinensis HOM05D008031 ORTHO05D010063 1.2e-38 163.7 171 55.6
Potri.003G073200 Populus trichocarpa HOM05D008031 ORTHO05D010063 1.2e-38 163.7 166 53.6
TWI14G1127 Tripterygium wilfordii HOM05D008031 ORTHO05D010063 1.6e-38 163.3 166 52.4
Thecc.06G130800 Theobroma cacao HOM05D008031 ORTHO05D010063 3.6e-38 162.2 166 52.4
Hma1.2p1_0090F.1_g045750 Hydrangea macrophylla HOM05D008031 ORTHO05D010063 1.8e-37 159.8 169 55.0
Hma1.2p1_2628F.1_g325675 Hydrangea macrophylla HOM05D008031 ORTHO05D010063 1.8e-37 159.8 169 55.0
CSS0025062 Camellia sinensis var. sinensis HOM05D001728 ORTHO05D004321 2.5e-36 156.0 170 53.5
Ciclev10027015m.g Citrus clementina HOM05D008031 ORTHO05D010063 3.3e-36 155.6 201 45.3
Rhsim08G0245200 Rhododendron simsii HOM05D008031 ORTHO05D010063 3.3e-36 155.6 167 52.1
COL.COLO4_30875 Corchorus olitorius HOM05D008031 ORTHO05D010063 9.7e-36 154.1 166 50.6
Actinidia24421 Actinidia chinensis HOM05D001728 ORTHO05D004321 1.1e-34 150.6 169 52.7
TAR626G1534 Trochodendron aralioides HOM05D008031 ORTHO05D010063 4.1e-34 148.7 167 50.9
Eucgr.J02592 Eucalyptus grandis HOM05D008031 ORTHO05D010063 1.2e-33 147.1 167 49.1
Glyma.07G046300 Glycine max HOM05D008031 ORTHO05D010063 1.1e-31 140.6 168 48.8
MD09G1172200 Malus domestica HOM05D008031 ORTHO05D010063 1.1e-31 140.6 149 49.7
FAN02G3240 Fragaria x ananassa HOM05D008031 ORTHO05D010063 2.5e-31 139.4 165 45.5
Gohir.D10G051032 Gossypium hirsutum HOM05D001728 ORTHO05D004321 3.2e-31 139.0 166 48.8
Gorai.011G054900 Gossypium raimondii HOM05D001728 ORTHO05D004321 3.2e-31 139.0 166 48.8
RcHm_v2.0_Chr2g0148091 Rosa chinensis HOM05D008031 ORTHO05D010063 4.2e-31 138.7 165 46.1
Gohir.A10G048037 Gossypium hirsutum HOM05D001728 ORTHO05D004321 5.5e-31 138.3 166 48.8
Duzib235G0155 Durio zibethinus HOM05D008031 ORTHO05D010063 9.4e-31 137.5 138 53.6
FvH4_6g35970 Fragaria vesca HOM05D008031 ORTHO05D010063 1.2e-30 137.1 165 46.7
FAN09G4453 Fragaria x ananassa HOM05D008031 ORTHO05D010063 1.2e-30 137.1 165 46.7
FAN14G4753 Fragaria x ananassa HOM05D008031 ORTHO05D010063 1.2e-30 137.1 165 46.7
FAN05G2192 Fragaria x ananassa HOM05D008031 ORTHO05D010063 2.1e-30 136.3 165 46.1
MD17G1154700 Malus domestica HOM05D008031 ORTHO05D010063 2.7e-30 136.0 149 49.0
Lj3g0013752 Lotus japonicus HOM05D008031 ORTHO05D010063 1.0e-29 134.0 168 47.0
Phvul.010G122700 Phaseolus vulgaris HOM05D008031 ORTHO05D010063 1.0e-29 134.0 169 45.6
PGR102G3014 Punica granatum HOM05D008031 ORTHO05D010063 1.0e-29 134.0 172 48.8
MELO3C022708.2 Cucumis melo HOM05D008031 ORTHO05D010063 1.4e-29 133.7 166 45.8
VMungo0331G1222 Vigna mungo HOM05D008031 ORTHO05D010063 1.4e-29 133.7 169 45.6
Peaxi162Scf00038g02327 Petunia axillaris HOM05D008031 ORTHO05D010063 1.8e-29 133.3 171 46.2
CsaV3_3G031060 Cucumis sativus L. HOM05D008031 ORTHO05D010063 6.7e-29 131.3 166 47.0
MBI19_g32875_MAGBIO Magnolia biondii HOM05D008031 ORTHO05D010063 1.1e-28 130.6 171 48.5
Lalb_Chr10g0101091 Lupinus albus HOM05D008031 ORTHO05D010063 1.5e-28 130.2 170 44.7
ClCG07G014260 Citrullus lanatus HOM05D008031 ORTHO05D010063 2.2e-27 126.3 166 45.8
Solyc03g123670.3 Solanum lycopersicum HOM05D008031 ORTHO05D010063 1.8e-26 123.2 169 42.6
Cc04_g00650 Coffea canephora HOM05D008031 ORTHO05D010063 3.1e-26 122.5 170 45.3
Cpa.g.sc25.199 Carica papaya HOM05D008031 ORTHO05D010063 5.3e-26 121.7 169 44.4
Sed0024761 Sechium edule HOM05D008031 ORTHO05D010063 5.3e-26 121.7 166 45.2
Medtr8g023390 Medicago truncatula HOM05D008031 ORTHO05D010063 1.2e-25 120.6 156 48.1
PGSC0003DMG400009151 Solanum tuberosum HOM05D008031 ORTHO05D010063 2.6e-25 119.4 169 42.0
Oeu019510.1 Olea europaea HOM05D008031 ORTHO05D010063 3.4e-25 119.0 168 44.6
Sopen03g041440 Solanum pennellii HOM05D008031 ORTHO05D010063 1.3e-24 117.1 169 40.8
SGA_v2.0_scaffold71G23934 Striga asiatica HOM05D008031 ORTHO05D010063 3.8e-24 115.5 169 42.6
CANSAT56G3277 Cannabis sativa HOM05D008031 ORTHO05D010063 4.7e-22 108.6 168 39.3
TPR.G29474 Trifolium pratense HOM05D008031 ORTHO05D010063 4.7e-22 108.6 164 42.1
Aqoxy7G04192 Aquilegia oxysepala HOM05D008031 ORTHO05D010063 8.0e-22 107.8 171 40.9
Nitab4.5_0006338g0010 Nicotiana tabacum HOM05D008031 ORTHO05D010063 1.0e-21 107.5 171 39.8
Dinv20378 Davidia involucrata HOM05D001728 ORTHO05D004321 1.4e-21 107.1 110 53.6
Glyma.16G014500 Glycine max HOM05D008031 ORTHO05D010063 3.0e-21 105.9 167 39.5
Oeu053417.1 Olea europaea HOM05D008031 ORTHO05D010063 3.9e-21 105.5 166 42.8
arahy.Tifrunner.gnm1.ann1.PVL51W Arachis hypogaea HOM05D008031 ORTHO05D010063 5.2e-21 105.1 174 43.7
arahy.Tifrunner.gnm1.ann1.8JA41T Arachis hypogaea HOM05D008031 ORTHO05D010063 8.8e-21 104.4 175 42.9
Oeu015468.1 Olea europaea HOM05D008031 ORTHO05D010063 9.7e-20 100.9 166 38.0
arahy.Tifrunner.gnm1.ann1.CKB8X1 Arachis hypogaea HOM05D008031 ORTHO05D010063 1.7e-19 100.1 175 42.3
DCAR_022641 Daucus carota HOM05D008031 ORTHO05D010063 1.8e-18 96.7 172 40.7
Migut.I01137 Erythranthe guttata HOM05D008031 ORTHO05D010063 1.8e-18 96.7 174 37.9
Nitab4.5_0006966g0010 Nicotiana tabacum HOM05D008031 ORTHO05D010063 1.8e-18 96.7 170 38.8
Lsat_1_v5_gn_4_90600 Lactuca sativa HOM05D008031 ORTHO05D010063 2.2e-16 89.7 152 41.4
Eucgr.I02164 Eucalyptus grandis HOM05D008031 ORTHO05D010063 5.0e-16 88.6 174 40.2
Hund18631 Selenicereus undatus HOM05D008031 ORTHO05D010063 1.0e-13 80.9 160 38.8
Ah.08g217400 Amaranthus hybridus HOM05D008031 ORTHO05D010063 2.3e-13 79.7 178 37.6
Duzib212G0134 Durio zibethinus HOM05D005099 ORTHO05D006087 9.7e-12 74.3 186 33.3
SalBow6G0345 Salvia bowleyana HOM05D008031 ORTHO05D010063 6.3e-11 71.6 161 38.5
TAR362G0212 Trochodendron aralioides HOM05D005099 ORTHO05D006087 6.3e-11 71.6 187 33.2
Thecc.04G288600 Theobroma cacao HOM05D005099 ORTHO05D006087 4.1e-10 68.9 191 30.9
CDE05G1539 Ceratophyllum demersum HOM05D008031 ORTHO05D010063 7.0e-10 68.2 170 31.8
Duzib151G0929 Durio zibethinus HOM05D005099 ORTHO05D006087 5.9e-09 65.1 193 31.1
Sabra08G0151700 Salix brachista HOM05D005099 ORTHO05D006087 7.7e-09 64.7 189 29.1
CiPaw.01G145600 Carya illinoinensis HOM05D005099 ORTHO05D006087 1.0e-08 64.3 190 28.9
MSTRG.9544 Avicennia marina HOM05D008031 ORTHO05D010063 1.3e-08 63.9 145 37.9
CSS0011820 Camellia sinensis var. sinensis HOM05D005099 ORTHO05D006087 2.2e-08 63.2 176 30.1
CSS0049831 Camellia sinensis var. sinensis HOM05D005099 ORTHO05D006087 2.9e-08 62.8 179 34.1
Manes.15G010800 Manihot esculenta HOM05D005099 ORTHO05D006087 2.9e-08 62.8 179 28.5
Hma1.2p1_0804F.1_g221070 Hydrangea macrophylla HOM05D005099 ORTHO05D006087 3.8e-08 62.4 188 33.0
Potri.008G219500 Populus trichocarpa HOM05D005099 ORTHO05D006087 3.8e-08 62.4 191 27.2
HPP92_016648 Vanilla planifolia HOM05D042795 ORTHO05D010063 3.8e-08 62.4 148 33.8
ATR0099G028 Amborella trichopoda HOM05D008031 ORTHO05D010063 5.0e-08 62.0 131 34.4
Dinv44353 Davidia involucrata HOM05D005099 ORTHO05D006087 8.5e-08 61.2 188 31.4
HPP92_016651 Vanilla planifolia HOM05D042795 ORTHO05D010063 8.5e-08 61.2 150 33.3
Ciclev10006010m.g Citrus clementina HOM05D005099 ORTHO05D006087 1.1e-07 60.8 183 28.4
Nn3g21536 Nelumbo nucifera HOM05D005099 ORTHO05D006087 1.1e-07 60.8 187 34.8
Rhsim08G0245400 Rhododendron simsii HOM05D002316 ORTHO05D002280 1.5e-07 60.5 61 50.8
AT3G06840 Arabidopsis thaliana HOM05D005099 ORTHO05D006087 1.9e-07 60.1 188 27.1
Rhsim02G0007200 Rhododendron simsii HOM05D005099 ORTHO05D006087 2.5e-07 59.7 182 31.9
EL10Ac3g06640 Beta vulgaris HOM05D005099 ORTHO05D006087 3.2e-07 59.3 188 30.9
TAR365G0602 Trochodendron aralioides HOM05D005099 ORTHO05D006087 4.2e-07 58.9 193 30.1
AUR62015274 Chenopodium quinoa HOM05D005099 ORTHO05D006087 5.5e-07 58.5 185 29.7
Actinidia14282 Actinidia chinensis HOM05D005099 ORTHO05D006087 7.2e-07 58.2 180 31.7
CiPaw.02G080200 Carya illinoinensis HOM05D005099 ORTHO05D006087 7.2e-07 58.2 186 27.4
ClCG06G004980 Citrullus lanatus HOM05D005099 ORTHO05D006087 7.2e-07 58.2 187 32.6
Cc03_g01550 Coffea canephora HOM05D005099 ORTHO05D006087 7.2e-07 58.2 192 28.6
Cfa015424 Carpinus fangiana HOM05D005099 ORTHO05D006087 9.4e-07 57.8 190 30.5
Potri.010G010600 Populus trichocarpa HOM05D005099 ORTHO05D006087 9.4e-07 57.8 192 29.2
ATR0693G064 Amborella trichopoda HOM05D005099 ORTHO05D006087 1.2e-06 57.4 169 31.4
MBI18_g04556_MAGBIO Magnolia biondii HOM05D005099 ORTHO05D006087 1.2e-06 57.4 176 29.0
CAN.G14.36 Capsicum annuum HOM05D005099 ORTHO05D006087 1.6e-06 57.0 202 29.2
THA.LOC104827334 Tarenaya hassleriana HOM05D005099 ORTHO05D006087 2.7e-06 56.2 194 27.8
AUR62018071 Chenopodium quinoa HOM05D005099 ORTHO05D006087 3.6e-06 55.8 186 30.1
Oeu033813.1 Olea europaea HOM05D005099 ORTHO05D006087 4.7e-06 55.5 183 29.5
Peaxi162Scf00065g00138 Petunia axillaris HOM05D005099 ORTHO05D006087 4.7e-06 55.5 201 27.4
Dinv29728 Davidia involucrata HOM05D005099 ORTHO05D006087 6.1e-06 55.1 177 27.7
VMungo1309G2116 Vigna mungo HOM05D005099 ORTHO05D006087 6.1e-06 55.1 192 28.1
PGSC0003DMG400011309 Solanum tuberosum HOM05D005099 ORTHO05D006087 8.0e-06 54.7 183 27.9
vmacro15214 Vaccinium macrocarpon HOM05D005099 ORTHO05D006087 8.0e-06 54.7 162 28.4


User provided reference genes

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