Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.01G210600 Carya illinoinensis HOM05D004903 ORTHO05D005849 1.5e-158 562.8 279 100.0
QL05p000658 Quercus lobata HOM05D004903 ORTHO05D005849 3.8e-125 451.8 275 81.1
QL05p000751 Quercus lobata HOM05D004903 ORTHO05D005849 5.6e-121 438.0 275 80.0
TAR624G0709 Trochodendron aralioides HOM05D004903 ORTHO05D005849 1.4e-108 396.7 281 69.8
Dinv20374 Davidia involucrata HOM05D004903 ORTHO05D005849 3.5e-107 392.1 286 69.9
MD09G1171800 Malus domestica HOM05D004903 ORTHO05D005849 1.5e-105 386.7 281 70.5
Prupe.3G030200 Prunus persica HOM05D004903 ORTHO05D005849 6.2e-104 381.3 286 71.0
Duzib160G0805 Durio zibethinus HOM05D004903 ORTHO05D005849 8.1e-104 380.9 277 69.3
CSS0022789 Camellia sinensis var. sinensis HOM05D004903 ORTHO05D005849 1.1e-103 380.6 278 69.4
Actinidia25997 Actinidia chinensis HOM05D004903 ORTHO05D005849 3.4e-102 375.6 277 69.3
Gorai.010G172600 Gossypium raimondii HOM05D004903 ORTHO05D005849 1.7e-101 373.2 277 69.0
Gohir.A06G142500 Gossypium hirsutum HOM05D004903 ORTHO05D005849 6.4e-101 371.3 277 68.6
Manes.11G011500 Manihot esculenta HOM05D004903 ORTHO05D005849 3.2e-100 369.0 277 68.2
Lj3g0025901 Lotus japonicus HOM05D004903 ORTHO05D005849 4.2e-100 368.6 274 67.2
RcHm_v2.0_Chr2g0148141 Rosa chinensis HOM05D004903 ORTHO05D005849 5.5e-100 368.2 289 67.1
Thecc.06G131400 Theobroma cacao HOM05D004903 ORTHO05D005849 1.3e-98 363.6 277 67.5
MD17G1155200 Malus domestica HOM05D004903 ORTHO05D005849 2.3e-98 362.8 285 66.0
GSVIVG01016657001 Vitis vinifera HOM05D004903 ORTHO05D005849 2.3e-98 362.8 274 65.3
FAN14G1686 Fragaria x ananassa HOM05D004903 ORTHO05D005849 1.9e-97 359.8 293 67.9
Atru.chr1.4170 Acer truncatum HOM05D004903 ORTHO05D005849 3.3e-97 359.0 277 66.1
FAN09G2808 Fragaria x ananassa HOM05D004903 ORTHO05D005849 4.3e-97 358.6 293 67.9
FAN02G0327 Fragaria x ananassa HOM05D004903 ORTHO05D005849 3.7e-96 355.5 289 68.2
FAN14G0435 Fragaria x ananassa HOM05D004903 ORTHO05D005849 3.7e-96 355.5 289 68.2
Hund18627 Selenicereus undatus HOM05D004903 ORTHO05D005849 4.8e-96 355.1 275 64.7
CANSAT56G0172 Cannabis sativa HOM05D004903 ORTHO05D005849 6.2e-96 354.8 280 67.1
arahy.Tifrunner.gnm1.ann1.97GHXX Arachis hypogaea HOM05D004903 ORTHO05D005849 8.1e-96 354.4 275 64.4
TWI59G0350 Tripterygium wilfordii HOM05D004903 ORTHO05D005849 3.1e-95 352.4 284 63.0
Medtr8g023500 Medicago truncatula HOM05D004903 ORTHO05D005849 4.0e-95 352.1 284 63.0
FvH4_6g36070 Fragaria vesca HOM05D004903 ORTHO05D005849 9.0e-95 350.9 291 66.7
Cfa003452 Carpinus fangiana HOM05D004903 ORTHO05D005849 2.6e-94 349.4 209 82.8
AUR62001391 Chenopodium quinoa HOM05D004903 ORTHO05D005849 2.6e-94 349.4 275 64.4
Glyma.07G046600 Glycine max HOM05D004903 ORTHO05D005849 2.6e-94 349.4 275 63.3
CAN.G1633.2 Capsicum annuum HOM05D004903 ORTHO05D005849 7.6e-94 347.8 277 65.0
Actinidia24416 Actinidia chinensis HOM05D004903 ORTHO05D005849 3.8e-93 345.5 287 64.1
Ciclev10026250m.g Citrus clementina HOM05D004903 ORTHO05D005849 3.8e-93 345.5 282 63.5
EL10Ac7g18248 Beta vulgaris HOM05D004903 ORTHO05D005849 6.5e-93 344.7 275 64.4
arahy.Tifrunner.gnm1.ann1.AA2XIP Arachis hypogaea HOM05D004903 ORTHO05D005849 2.5e-92 342.8 277 62.1
Potri.001G161800 Populus trichocarpa HOM05D004903 ORTHO05D005849 2.5e-92 342.8 277 62.8
Glyma.16G015600 Glycine max HOM05D004903 ORTHO05D005849 5.5e-92 341.7 276 63.0
Lalb_Chr17g0343171 Lupinus albus HOM05D004903 ORTHO05D005849 1.2e-91 340.5 274 62.8
DCAR_022636 Daucus carota HOM05D004903 ORTHO05D005849 4.6e-91 338.6 278 64.0
arahy.Tifrunner.gnm1.ann1.HDKQ14 Arachis hypogaea HOM05D004903 ORTHO05D005849 7.9e-91 337.8 295 59.3
vmacro18714 Vaccinium macrocarpon HOM05D004903 ORTHO05D005849 7.9e-91 337.8 280 63.9
Nitab4.5_0006190g0020 Nicotiana tabacum HOM05D004903 ORTHO05D005849 1.0e-90 337.4 276 63.8
PGSC0003DMG400004869 Solanum tuberosum HOM05D004903 ORTHO05D005849 1.3e-90 337.0 278 62.6
THA.LOC104810400 Tarenaya hassleriana HOM05D004903 ORTHO05D005849 1.8e-90 336.7 275 64.0
Peaxi162Scf00207g01534 Petunia axillaris HOM05D004903 ORTHO05D005849 2.3e-90 336.3 277 63.2
Thhalv10011709m.g Eutrema salsugineum HOM05D004903 ORTHO05D005849 3.0e-90 335.9 276 62.0
Gorai.010G236300 Gossypium raimondii HOM05D004903 ORTHO05D005849 3.0e-90 335.9 275 62.5
Gohir.D06G202400 Gossypium hirsutum HOM05D004903 ORTHO05D005849 6.7e-90 334.7 275 62.2
Lsat_1_v5_gn_5_137641 Lactuca sativa HOM05D004903 ORTHO05D005849 8.7e-90 334.3 271 64.9
Nn8g38503 Nelumbo nucifera HOM05D004903 ORTHO05D005849 1.1e-89 334.0 274 63.5
arahy.Tifrunner.gnm1.ann1.3XU7EE Arachis hypogaea HOM05D004903 ORTHO05D005849 2.5e-89 332.8 275 61.5
arahy.Tifrunner.gnm1.ann1.M9BVNS Arachis hypogaea HOM05D004903 ORTHO05D005849 2.5e-89 332.8 275 61.5
Phvul.010G122300 Phaseolus vulgaris HOM05D004903 ORTHO05D005849 2.5e-89 332.8 276 60.1
Aqoxy7G00919 Aquilegia oxysepala HOM05D004903 ORTHO05D005849 5.7e-89 331.6 285 60.4
C06p09540 Brassica napus HOM05D004903 ORTHO05D005849 5.7e-89 331.6 276 63.8
BolC6t36028H Brassica oleracea HOM05D004903 ORTHO05D005849 5.7e-89 331.6 276 63.8
AT1G53760 Arabidopsis thaliana HOM05D004903 ORTHO05D005849 7.4e-89 331.3 275 62.2
HanXRQChr12g0360041 Helianthus annuus HOM05D004903 ORTHO05D005849 9.6e-89 330.9 276 63.0
Eucgr.J02586 Eucalyptus grandis HOM05D004903 ORTHO05D005849 1.3e-88 330.5 283 62.9
CARHR044070 Cardamine hirsuta HOM05D004903 ORTHO05D005849 2.1e-88 329.7 281 62.3
Psat4g164720 Pisum sativum HOM05D004903 ORTHO05D005849 2.8e-88 329.3 275 59.6
Solyc06g063130.3 Solanum lycopersicum HOM05D004903 ORTHO05D005849 2.8e-88 329.3 278 61.5
COL.COLO4_30880 Corchorus olitorius HOM05D004903 ORTHO05D005849 2.4e-87 326.2 219 74.9
Sopen06g022580 Solanum pennellii HOM05D004903 ORTHO05D005849 2.4e-87 326.2 278 60.8
CsaV3_7G033900 Cucumis sativus L. HOM05D004903 ORTHO05D005849 3.1e-87 325.9 285 60.4
BcaC08g43554 Brassica carinata HOM05D004903 ORTHO05D005849 6.9e-87 324.7 275 62.2
ClCG09G001430 Citrullus lanatus HOM05D004903 ORTHO05D005849 6.9e-87 324.7 284 59.5
BcaB02g10893 Brassica carinata HOM05D004903 ORTHO05D005849 9.0e-87 324.3 275 60.7
Sed0027894 Sechium edule HOM05D004903 ORTHO05D005849 9.0e-87 324.3 285 60.4
AL1G62450 Arabidopsis lyrata HOM05D004903 ORTHO05D005849 1.2e-86 323.9 276 62.0
BcaB07g33303 Brassica carinata HOM05D004903 ORTHO05D005849 1.2e-86 323.9 275 61.8
A06p00790 Brassica napus HOM05D004903 ORTHO05D005849 1.5e-86 323.6 275 62.5
BraA06t23313Z Brassica rapa HOM05D004903 ORTHO05D005849 2.0e-86 323.2 275 62.5
MSTRG.10905 Avicennia marina HOM05D004903 ORTHO05D005849 3.4e-86 322.4 285 59.3
Gohir.A06G194700 Gossypium hirsutum HOM05D004903 ORTHO05D005849 4.5e-86 322.0 275 60.7
Lj5A28T47 Lonicera japonica HOM05D004903 ORTHO05D005849 4.5e-86 322.0 334 53.6
PSO135G0609 Papaver somniferum HOM05D004903 ORTHO05D005849 7.6e-86 321.2 280 57.5
Migut.I01143 Erythranthe guttata HOM05D004903 ORTHO05D005849 1.3e-85 320.5 278 60.1
Carub.0001s4303 Capsella rubella HOM05D004903 ORTHO05D005849 1.7e-85 320.1 275 60.0
Sp1g40280 Schrenkiella parvula HOM05D004903 ORTHO05D005849 1.7e-85 320.1 275 60.7
C06p15280 Brassica napus HOM05D004903 ORTHO05D005849 2.2e-85 319.7 275 61.1
PSO724G0850 Papaver somniferum HOM05D004903 ORTHO05D005849 2.2e-85 319.7 277 58.1
BolC6t36703H Brassica oleracea HOM05D004903 ORTHO05D005849 2.9e-85 319.3 275 61.1
A05p17920 Brassica napus HOM05D004903 ORTHO05D005849 6.5e-85 318.2 275 61.1
BcaC08g44129 Brassica carinata HOM05D004903 ORTHO05D005849 8.5e-85 317.8 275 61.1
Dinv37814 Davidia involucrata HOM05D004903 ORTHO05D005849 8.5e-85 317.8 211 74.4
SalBow6G3230 Salvia bowleyana HOM05D004903 ORTHO05D005849 1.1e-84 317.4 275 58.9
BraA05t20686Z Brassica rapa HOM05D004903 ORTHO05D005849 1.9e-84 316.6 275 60.7
Cc04_g00600 Coffea canephora HOM05D004903 ORTHO05D005849 4.2e-84 315.5 280 60.4
arahy.Tifrunner.gnm1.ann1.ZQ2A8X Arachis hypogaea HOM05D004903 ORTHO05D005849 3.6e-83 312.4 296 56.1
AUR62025608 Chenopodium quinoa HOM05D004903 ORTHO05D005849 4.3e-81 305.4 266 60.5
Sabra03G0044200 Salix brachista HOM05D004903 ORTHO05D005849 5.7e-81 305.1 308 54.5
Nitab4.5_0010570g0050 Nicotiana tabacum HOM05D004903 ORTHO05D005849 9.7e-81 304.3 276 59.1
Rhsim08G0245600 Rhododendron simsii HOM05D004903 ORTHO05D005849 3.7e-80 302.4 229 69.0
Aa31LG10G1530 Aethionema arabicum HOM05D000070 ORTHO05D003301 1.1e-79 300.8 243 63.0
Gorai.011G054300 Gossypium raimondii HOM05D004903 ORTHO05D005849 1.1e-79 300.8 226 68.1
Sc12g0011010 Simmondsia chinensis HOM05D004903 ORTHO05D005849 1.1e-79 300.8 269 61.3
TPR.G15248 Trifolium pratense HOM05D004903 ORTHO05D005849 1.1e-79 300.8 218 66.1
arahy.Tifrunner.gnm1.ann1.5Z4EMJ Arachis hypogaea HOM05D004903 ORTHO05D005849 3.1e-79 299.3 276 56.5
Cpa.g.sc25.203 Carica papaya HOM05D004903 ORTHO05D005849 1.0e-77 294.3 190 75.8
Ca_23466_v3 Cicer arietinum L. HOM05D004903 ORTHO05D005849 1.3e-77 293.9 219 66.2
unitig_32.g11002 Utricularia gibba HOM05D004903 ORTHO05D005849 3.2e-76 289.3 281 51.6
Sabra01G0130700 Salix brachista HOM05D004903 ORTHO05D005849 5.5e-76 288.5 302 54.6
HPP92_000828 Vanilla planifolia HOM05D004903 ORTHO05D005849 5.5e-76 288.5 275 54.9
VMungo0331G0875 Vigna mungo HOM05D004903 ORTHO05D005849 1.6e-75 287.0 226 62.4
ECA234G0009 Erigeron canadensis HOM05D004903 ORTHO05D005849 2.6e-73 279.6 222 63.1
Gohir.A10G050050 Gossypium hirsutum HOM05D004903 ORTHO05D005849 5.7e-73 278.5 281 55.9
SGA_v2.0_scaffold71G23946 Striga asiatica HOM05D004903 ORTHO05D005849 7.4e-73 278.1 280 55.0
Hma1.2p1_1999F.1_g310500 Hydrangea macrophylla HOM05D004903 ORTHO05D005849 2.8e-72 276.2 188 72.3
Hma1.2p1_0090F.1_g045680 Hydrangea macrophylla HOM05D004903 ORTHO05D005849 3.7e-72 275.8 211 65.9
Zm00001eb207930 Zea mays HOM05D004903 ORTHO05D005849 6.3e-72 275.0 275 52.4
Os02g0152600 Oryza sativa ssp. japonica HOM05D004903 ORTHO05D005849 1.4e-71 273.9 278 51.4
ATR0006G080 Amborella trichopoda HOM05D004903 ORTHO05D005849 2.4e-71 273.1 273 52.4
MBI17_g12875_MAGBIO Magnolia biondii HOM05D004903 ORTHO05D005849 2.4e-71 273.1 276 53.3
MELO3C024303.2 Cucumis melo HOM05D004903 ORTHO05D005849 4.1e-71 272.3 198 67.2
Oeu053414.1 Olea europaea HOM05D004903 ORTHO05D005849 3.4e-70 269.2 238 58.8
Actinidia31143 Actinidia chinensis HOM05D004903 ORTHO05D005849 4.5e-70 268.9 252 56.7
Oeu019513.1 Olea europaea HOM05D004903 ORTHO05D005849 1.3e-64 250.8 195 64.6
CDE06G0378 Ceratophyllum demersum HOM05D004903 ORTHO05D005849 2.2e-64 250.0 232 54.3
Sed0021101 Sechium edule HOM05D004903 ORTHO05D005849 1.1e-63 247.7 210 60.0
Haze_16148 Corylus avellana HOM05D003205 ORTHO05D003746 1.6e-59 233.8 194 66.0
CDE04G1042 Ceratophyllum demersum HOM05D004903 ORTHO05D005849 2.7e-59 233.0 220 56.4
Haze_16144 Corylus avellana HOM05D003205 ORTHO05D003746 2.7e-59 233.0 194 65.5
Gohir.D10G050650 Gossypium hirsutum HOM05D004903 ORTHO05D005849 2.2e-56 223.4 166 67.5
Mapoly0021s0048 Marchantia polymorpha HOM05D004903 ORTHO05D005849 4.5e-46 189.1 283 38.2
THA.LOC104822767 Tarenaya hassleriana HOM05D006671 ORTHO05D008637 2.3e-42 176.8 207 52.2
AagrBONN_evm.TU.Sc2ySwM_228.2429 Anthoceros agrestis HOM05D004903 ORTHO05D005849 2.0e-41 173.7 261 38.3
Gohir.D06G148232 Gossypium hirsutum HOM05D004903 ORTHO05D005849 1.4e-39 167.5 121 69.4
BcaB02g07096 Brassica carinata HOM05D000219 ORTHO05D000226 8.0e-35 151.8 121 65.3
BcaB07g32153 Brassica carinata HOM05D004903 ORTHO05D005849 3.0e-34 149.8 122 62.3
CBR_g34164 Chara braunii HOM05D004903 ORTHO05D005849 5.2e-34 149.1 206 38.3
arahy.Tifrunner.gnm1.ann1.AT31DH Arachis hypogaea HOM05D004903 ORTHO05D005849 7.0e-31 138.7 96 68.8
arahy.Tifrunner.gnm1.ann1.RS9BE1 Arachis hypogaea HOM05D004903 ORTHO05D005849 3.5e-30 136.3 96 67.7
Pp3c13_9790 Physcomitrium patens HOM05D004903 ORTHO05D005849 1.5e-28 131.0 275 33.1
Gohir.D02G109866 Gossypium hirsutum HOM05D004903 ORTHO05D005849 2.4e-23 113.6 89 64.0
Duzib192G1079 Durio zibethinus HOM05D004903 ORTHO05D005849 7.0e-23 112.1 205 37.1
Cpa.g.sc25.204 Carica papaya HOM05D004903 ORTHO05D005849 1.5e-20 104.4 105 53.3
CDE06G0441 Ceratophyllum demersum HOM05D004903 ORTHO05D005849 2.5e-20 103.6 88 56.8
SEGI_38260 Sequoiadendron giganteum HOM05D004903 ORTHO05D005849 1.4e-18 97.8 135 41.5
SEGI_28585 Sequoiadendron giganteum HOM05D004903 ORTHO05D005849 1.8e-18 97.4 126 42.9
TPR.G26438 Trifolium pratense HOM05D004903 ORTHO05D005849 2.0e-17 94.0 71 59.2
Glyma.16G014900 Glycine max HOM05D004903 ORTHO05D005849 4.9e-16 89.4 98 51.0
Cre08.g358557 Chlamydomonas reinhardtii HOM05D004903 ORTHO05D005849 5.1e-13 79.3 197 25.4
Hma1.2p1_0090F.1_g045690 Hydrangea macrophylla HOM05D004903 ORTHO05D005849 1.1e-12 78.2 74 59.5
PRCOL_00005128 Prasinoderma coloniale HOM05D004903 ORTHO05D005849 3.3e-12 76.6 205 31.2
Actinidia21845 Actinidia chinensis HOM05D004903 ORTHO05D005849 5.2e-10 69.3 44 70.5
arahy.Tifrunner.gnm1.ann1.1E2DFU Arachis hypogaea HOM05D001485 ORTHO05D005849 3.4e-09 66.6 49 69.4
MBI17_g12881_MAGBIO Magnolia biondii HOM05D007686 ORTHO05D009709 3.4e-09 66.6 56 60.7
Gohir.D06G112500 Gossypium hirsutum HOM05D004903 ORTHO05D036089 5.4e-07 59.3 45 68.9
Gohir.D02G078533 Gossypium hirsutum HOM05D004903 ORTHO05D005849 7.1e-07 58.9 41 75.6
Gorai.012G060300 Gossypium raimondii HOM05D004903 ORTHO05D036089 7.1e-07 58.9 33 84.8
Gohir.D04G053733 Gossypium hirsutum HOM05D004903 ORTHO05D036089 1.2e-06 58.2 30 90.0
Gohir.D05G314400 Gossypium hirsutum HOM05D001728 ORTHO05D004321 1.2e-06 58.2 30 90.0
Gohir.D07G051800 Gossypium hirsutum HOM05D001728 ORTHO05D004321 1.2e-06 58.2 30 90.0
Gohir.D09G047000 Gossypium hirsutum HOM05D001361 ORTHO05D002529 1.2e-06 58.2 30 90.0
Gohir.D10G160200 Gossypium hirsutum HOM05D001361 ORTHO05D005849 6.0e-06 55.8 30 86.7
Medtr8g023540 Medicago truncatula HOM05D004903 ORTHO05D005849 7.8e-06 55.5 60 43.3


User provided reference genes

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