Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.01G204100 Carya illinoinensis HOM05D006492 ORTHO05D008432 0.0e+00 1741.5 903 100.0
Haze_11549 Corylus avellana HOM05D006492 ORTHO05D008432 0.0e+00 1353.2 902 78.3
Cfa014875 Carpinus fangiana HOM05D006492 ORTHO05D008432 0.0e+00 1350.9 904 77.8
QL05p063769 Quercus lobata HOM05D006492 ORTHO05D008432 0.0e+00 1328.2 902 77.2
Dinv38285 Davidia involucrata HOM05D006492 ORTHO05D008432 0.0e+00 1144.8 904 65.8
Potri.003G175300 Populus trichocarpa HOM05D006492 ORTHO05D008432 0.0e+00 1101.7 903 63.9
CSS0015325 Camellia sinensis var. sinensis HOM05D006492 ORTHO05D008432 0.0e+00 1087.0 884 64.1
Thecc.04G212600 Theobroma cacao HOM05D006492 ORTHO05D008432 2.5e-311 1072.0 899 62.2
Potri.001G053000 Populus trichocarpa HOM05D006492 ORTHO05D008432 5.6e-311 1070.8 902 62.5
Prupe.1G060300 Prunus persica HOM05D006492 ORTHO05D008432 1.5e-308 1062.8 913 62.5
MD00G1101100 Malus domestica HOM05D006492 ORTHO05D008432 2.6e-308 1062.0 910 62.3
GSVIVG01029042001 Vitis vinifera HOM05D006492 ORTHO05D008432 8.2e-307 1057.0 914 62.1
Duzib212G0418 Durio zibethinus HOM05D006492 ORTHO05D008432 1.3e-304 1049.7 902 60.4
RcHm_v2.0_Chr4g0396881 Rosa chinensis HOM05D006492 ORTHO05D008432 6.5e-304 1047.3 914 62.0
TAR365G0557 Trochodendron aralioides HOM05D006492 ORTHO05D008432 1.9e-303 1045.8 911 62.2
Actinidia25080 Actinidia chinensis HOM05D006492 ORTHO05D008432 2.7e-302 1042.0 902 61.4
TAR365G0379 Trochodendron aralioides HOM05D006492 ORTHO05D008432 6.8e-301 1037.3 911 61.7
FAN12G2087 Fragaria x ananassa HOM05D006492 ORTHO05D008432 1.5e-300 1036.2 913 61.0
FAN07G0933 Fragaria x ananassa HOM05D006492 ORTHO05D008432 1.3e-299 1033.1 913 61.0
Sabra01G0037500 Salix brachista HOM05D006492 ORTHO05D008432 2.2e-299 1032.3 902 61.8
Ciclev10004244m.g Citrus clementina HOM05D006492 ORTHO05D008432 1.8e-298 1029.2 903 60.0
Gorai.006G055600 Gossypium raimondii HOM05D006492 ORTHO05D008432 7.7e-297 1023.8 905 59.6
COL.COLO4_34090 Corchorus olitorius HOM05D006492 ORTHO05D008432 1.0e-296 1023.5 902 59.9
FAN22G2187 Fragaria x ananassa HOM05D006492 ORTHO05D008432 1.0e-296 1023.5 913 60.7
Gohir.D09G053008 Gossypium hirsutum HOM05D006492 ORTHO05D008432 2.1e-294 1015.8 905 59.2
Manes.15G049000 Manihot esculenta HOM05D006492 ORTHO05D008432 2.2e-291 1005.7 900 59.2
vmacro00516 Vaccinium macrocarpon HOM05D006492 ORTHO05D008432 1.6e-289 999.6 921 58.5
Rhsim09G0049200 Rhododendron simsii HOM05D006492 ORTHO05D008432 2.0e-289 999.2 946 56.8
FAN17G1964 Fragaria x ananassa HOM05D006492 ORTHO05D008432 2.6e-284 982.2 914 59.1
TWI09G1643 Tripterygium wilfordii HOM05D006492 ORTHO05D008432 2.7e-281 972.2 952 55.9
CANSAT78G0108 Cannabis sativa HOM05D006492 ORTHO05D008432 2.5e-279 965.7 920 57.7
MSTRG.24638 Avicennia marina HOM05D006492 ORTHO05D008432 1.2e-273 946.8 904 55.5
Lju414A5T31 Lonicera japonica HOM05D006492 ORTHO05D008432 1.2e-273 946.8 837 59.9
Cpa.g.sc59.86 Carica papaya HOM05D006492 ORTHO05D008432 3.9e-272 941.8 852 58.8
Nn1g03104 Nelumbo nucifera HOM05D006492 ORTHO05D008432 2.1e-270 936.0 906 56.0
Glyma.10G192800 Glycine max HOM05D006492 ORTHO05D008432 1.5e-268 929.9 904 55.1
Glyma.20G197700 Glycine max HOM05D006492 ORTHO05D008432 4.4e-268 928.3 904 54.9
Nitab4.5_0012325g0010 Nicotiana tabacum HOM05D006492 ORTHO05D008432 1.2e-265 920.2 904 53.5
Lj5g0018955 Lotus japonicus HOM05D006492 ORTHO05D008432 2.7e-265 919.1 906 54.9
Nitab4.5_0000493g0030 Nicotiana tabacum HOM05D006492 ORTHO05D008432 4.3e-263 911.8 916 52.8
VMungo0720G0701 Vigna mungo HOM05D006492 ORTHO05D008432 1.6e-262 909.8 905 54.0
arahy.Tifrunner.gnm1.ann1.TP3X9S Arachis hypogaea HOM05D006492 ORTHO05D008432 2.4e-261 906.0 902 52.9
Phvul.007G134600 Phaseolus vulgaris HOM05D006492 ORTHO05D008432 2.4e-261 906.0 904 53.1
Cc03_g07180 Coffea canephora HOM05D006492 ORTHO05D008432 6.8e-261 904.4 917 52.8
ClCG05G003620 Citrullus lanatus HOM05D006492 ORTHO05D008432 2.0e-260 902.9 903 54.8
Peaxi162Scf00047g01324 Petunia axillaris HOM05D006492 ORTHO05D008432 2.0e-260 902.9 905 53.1
MBI10_g16832_MAGBIO Magnolia biondii HOM05D006492 ORTHO05D008432 3.4e-260 902.1 896 55.2
Lalb_Chr21g0312661 Lupinus albus HOM05D006492 ORTHO05D008432 1.4e-258 896.7 905 53.4
Sopen09g034300 Solanum pennellii HOM05D006492 ORTHO05D008432 3.2e-258 895.6 905 52.0
Migut.N00332 Erythranthe guttata HOM05D006492 ORTHO05D008432 1.6e-257 893.3 918 53.9
Medtr1g090050 Medicago truncatula HOM05D006492 ORTHO05D008432 8.7e-256 887.5 919 51.7
CAN.G1552.5 Capsicum annuum HOM05D006492 ORTHO05D008432 4.0e-253 878.6 885 52.9
TPR.G13408 Trifolium pratense HOM05D006492 ORTHO05D008432 1.2e-252 877.1 919 51.6
SGA_v2.0_scaffold2G00843 Striga asiatica HOM05D006492 ORTHO05D008432 2.0e-252 876.3 902 52.1
EL10Ac3g06781 Beta vulgaris HOM05D006492 ORTHO05D008432 2.6e-252 875.9 906 52.0
Hund24849 Selenicereus undatus HOM05D006492 ORTHO05D008432 3.8e-251 872.1 905 52.3
Eucgr.H00098 Eucalyptus grandis HOM05D006492 ORTHO05D008432 5.4e-250 868.2 897 53.3
Aqoxy2G03837 Aquilegia oxysepala HOM05D006492 ORTHO05D008432 9.3e-250 867.5 908 52.2
Oeu051651.1 Olea europaea HOM05D006492 ORTHO05D008432 1.6e-249 866.7 772 57.8
CsaV3_3G011330 Cucumis sativus L. HOM05D006492 ORTHO05D008432 8.7e-248 860.9 902 52.8
Psat6g170280 Pisum sativum HOM05D006492 ORTHO05D008432 7.3e-247 857.8 921 50.8
Sc14g0004710 Simmondsia chinensis HOM05D006492 ORTHO05D008432 3.6e-246 855.5 904 51.4
Ca_10406_v3 Cicer arietinum L. HOM05D006492 ORTHO05D008432 4.8e-246 855.1 926 50.9
PGR142G2376 Punica granatum HOM05D006492 ORTHO05D008432 3.1e-245 852.4 904 52.5
ECA233G5226 Erigeron canadensis HOM05D006492 ORTHO05D008432 1.3e-243 847.0 897 51.4
AUR62035934 Chenopodium quinoa HOM05D006492 ORTHO05D008432 1.4e-242 843.6 905 51.0
Sed0001454 Sechium edule HOM05D006492 ORTHO05D008432 1.9e-242 843.2 902 52.0
DCAR_002278 Daucus carota HOM05D006492 ORTHO05D008432 2.1e-241 839.7 909 50.4
SalBow3G2597 Salvia bowleyana HOM05D006492 ORTHO05D008432 2.8e-238 829.3 932 50.1
Ah.04g153340 Amaranthus hybridus HOM05D006492 ORTHO05D008432 1.8e-237 826.6 905 48.7
HanXRQChr07g0185861 Helianthus annuus HOM05D006492 ORTHO05D008432 5.5e-234 815.1 897 50.1
AL1G14360 Arabidopsis lyrata HOM05D006492 ORTHO05D008432 1.8e-224 783.5 907 47.4
C08p01350 Brassica napus HOM05D006492 ORTHO05D008432 1.8e-224 783.5 904 48.2
THA.LOC104816017 Tarenaya hassleriana HOM05D006492 ORTHO05D008432 3.9e-224 782.3 906 48.6
Sp1g03490 Schrenkiella parvula HOM05D006492 ORTHO05D008432 6.7e-224 781.6 899 47.9
BolC8t46943H Brassica oleracea HOM05D006492 ORTHO05D008432 3.3e-223 779.2 903 48.0
AT1G04650 Arabidopsis thaliana HOM05D006492 ORTHO05D008432 1.6e-222 776.9 902 46.7
CARHR004030 Cardamine hirsuta HOM05D006492 ORTHO05D008432 3.7e-222 775.8 902 46.6
unitig_899.g15531 Utricularia gibba HOM05D006492 ORTHO05D008432 5.3e-221 771.9 885 48.4
Atru.chr4.1802 Acer truncatum HOM05D006492 ORTHO05D008432 2.9e-219 766.1 662 58.8
Carub.0001s0390 Capsella rubella HOM05D006492 ORTHO05D008432 6.1e-217 758.4 902 45.6
MELO3C006341.2 Cucumis melo HOM05D006492 ORTHO05D008432 7.9e-217 758.1 818 51.6
A08p36780 Brassica napus HOM05D006492 ORTHO05D008432 1.8e-216 756.9 903 46.7
BraA08t35581Z Brassica rapa HOM05D006492 ORTHO05D008432 1.1e-215 754.2 903 46.6
Lsat_1_v5_gn_6_62680 Lactuca sativa HOM05D006492 ORTHO05D008432 2.5e-215 753.1 899 47.3
ATR0787G047 Amborella trichopoda HOM05D006492 ORTHO05D008432 9.7e-215 751.1 916 46.1
Thhalv10006668m.g Eutrema salsugineum HOM05D006492 ORTHO05D008432 3.7e-214 749.2 920 45.0
BcaC07g36892 Brassica carinata HOM05D006492 ORTHO05D008432 3.2e-210 736.1 903 46.0
PSO017G3024 Papaver somniferum HOM05D006492 ORTHO05D008432 4.7e-209 732.3 951 47.0
A10p03080 Brassica napus HOM05D006492 ORTHO05D008432 1.0e-208 731.1 898 45.3
Aa31LG1G20220 Aethionema arabicum HOM05D006492 ORTHO05D008432 1.4e-205 720.7 920 43.6
PSO063G2396 Papaver somniferum HOM05D006492 ORTHO05D008432 1.8e-205 720.3 946 47.1
vmacro22821 Vaccinium macrocarpon HOM05D006492 ORTHO05D008432 1.8e-200 703.7 943 46.9
CDE04G0311 Ceratophyllum demersum HOM05D006492 ORTHO05D008432 4.1e-197 692.6 834 45.3
FvH4_4g05680 Fragaria vesca HOM05D006492 ORTHO05D008432 1.7e-195 687.2 610 60.5
Zm00001eb003580 Zea mays HOM05D006492 ORTHO05D008432 2.7e-180 636.7 907 41.0
SHI00019 Sapria himalayana HOM05D006492 ORTHO05D000009 5.0e-179 632.5 905 42.9
Os03g0144000 Oryza sativa ssp. japonica HOM05D006492 ORTHO05D008432 1.1e-165 588.2 932 38.8
Solyc09g091370.4 Solanum lycopersicum HOM05D006492 ORTHO05D008432 1.2e-151 541.6 578 50.5
SEGI_21616 Sequoiadendron giganteum HOM05D006492 ORTHO05D008432 3.0e-147 526.9 923 37.1
BraA10t42581Z Brassica rapa HOM05D006492 ORTHO05D008432 3.9e-123 446.8 554 43.7
Pp3c16_18660 Physcomitrium patens HOM05D006492 ORTHO05D008432 1.8e-67 261.9 938 26.0
HPP92_025560 Vanilla planifolia HOM05D006492 ORTHO05D008432 5.0e-62 243.8 324 44.1
SMO117G0361 Selaginella moellendorffii HOM05D006492 ORTHO05D008432 1.7e-49 202.2 737 26.2
HPP92_025559 Vanilla planifolia HOM05D006492 ORTHO05D008432 1.6e-47 195.7 505 31.1
arahy.Tifrunner.gnm1.ann1.LCJ3P1 Arachis hypogaea HOM05D006492 ORTHO05D008432 5.4e-40 170.6 218 44.0
Mapoly0061s0085 Marchantia polymorpha HOM05D006492 ORTHO05D008432 9.5e-37 159.8 446 27.8
C05p02850 Brassica napus HOM05D006492 ORTHO05D008432 2.6e-26 125.2 136 48.5
AagrBONN_evm.TU.Sc2ySwM_117.2272 Anthoceros agrestis HOM05D006492 ORTHO05D008432 3.8e-25 121.3 421 27.1
C05p02840 Brassica napus HOM05D006492 ORTHO05D008432 4.0e-19 101.3 117 43.6
CBR_g61877 Chara braunii HOM05D006492 ORTHO05D008432 1.2e-15 89.7 719 20.7
Atru.chr4.1801 Acer truncatum HOM05D006492 ORTHO05D008432 2.1e-15 89.0 84 56.0
Lju414A5G29 Lonicera japonica HOM05D006492 ORTHO05D008432 1.3e-14 86.3 73 64.4
Cfa022935 Carpinus fangiana HOM05D000902 ORTHO05D018943 1.2e-07 63.2 55 65.5
Nitab4.5_0005468g0040 Nicotiana tabacum HOM05D001280 ORTHO05D008432 1.6e-07 62.8 104 37.5
Gohir.D06G107600 Gossypium hirsutum HOM05D001986 ORTHO05D002283 2.3e-06 58.9 54 59.3
Gohir.D01G124101 Gossypium hirsutum HOM05D021756 ORTHO05D018943 3.0e-06 58.5 66 50.0
Gohir.D04G085800 Gossypium hirsutum HOM05D017690 ORTHO05D015145 3.0e-06 58.5 56 58.9
Gohir.D11G198966 Gossypium hirsutum HOM05D021756 ORTHO05D018943 5.1e-06 57.8 51 60.8


User provided reference genes

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