Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.01G203200 Carya illinoinensis HOM05D004038 ORTHO05D004619 0.0e+00 1216.1 615 100.0
Cfa008534 Carpinus fangiana HOM05D004038 ORTHO05D004619 0.0e+00 1088.9 615 89.6
Haze_11105 Corylus avellana HOM05D004038 ORTHO05D004619 0.0e+00 1082.0 615 88.9
CiPaw.02G125700 Carya illinoinensis HOM05D004038 ORTHO05D004619 0.0e+00 1077.8 604 90.1
QL10p064923 Quercus lobata HOM05D004038 ORTHO05D004619 3.2e-310 1067.8 612 88.6
Manes.01G009451 Manihot esculenta HOM05D004038 ORTHO05D004619 2.6e-296 1021.5 603 86.1
FAN28G1790 Fragaria x ananassa HOM05D004038 ORTHO05D004619 5.5e-294 1013.8 601 85.0
Prupe.7G271200 Prunus persica HOM05D004038 ORTHO05D004619 5.5e-294 1013.8 604 85.4
Atru.chr3.1959 Acer truncatum HOM05D004038 ORTHO05D004619 1.2e-293 1012.7 599 84.5
RcHm_v2.0_Chr2g0084351 Rosa chinensis HOM05D004038 ORTHO05D004619 3.5e-293 1011.1 608 84.4
Cpa.g.sc9.239 Carica papaya HOM05D004038 ORTHO05D004619 6.0e-293 1010.4 613 84.0
Dinv24739 Davidia involucrata HOM05D004038 ORTHO05D004619 7.9e-293 1010.0 600 85.7
FvH4_1g00080 Fragaria vesca HOM05D004038 ORTHO05D004619 7.9e-293 1010.0 601 84.7
GSVIVG01038267001 Vitis vinifera HOM05D004038 ORTHO05D004619 5.6e-291 1003.8 623 82.5
TAR365G0572 Trochodendron aralioides HOM05D004038 ORTHO05D004619 7.4e-291 1003.4 603 83.7
Dinv33253 Davidia involucrata HOM05D004038 ORTHO05D004619 4.8e-290 1000.7 597 84.8
MD15G1142000 Malus domestica HOM05D004038 ORTHO05D004619 9.0e-289 996.5 611 82.2
Thecc.05G000500 Theobroma cacao HOM05D004038 ORTHO05D004619 2.6e-288 995.0 608 83.2
Peaxi162Scf01205g00162 Petunia axillaris HOM05D004038 ORTHO05D004619 4.5e-288 994.2 610 83.1
FAN26G0143 Fragaria x ananassa HOM05D004038 ORTHO05D004619 5.8e-288 993.8 594 85.0
Nitab4.5_0000348g0080 Nicotiana tabacum HOM05D004038 ORTHO05D004619 7.6e-288 993.4 606 83.5
Hma1.2p1_0513F.1_g169760 Hydrangea macrophylla HOM05D004038 ORTHO05D004619 1.7e-287 992.3 618 83.3
Ciclev10019310m.g Citrus clementina HOM05D004038 ORTHO05D004619 8.4e-287 989.9 600 83.8
Potri.007G146500 Populus trichocarpa HOM05D004038 ORTHO05D004619 3.2e-286 988.0 602 82.6
Duzib093G1419 Durio zibethinus HOM05D004038 ORTHO05D004619 1.8e-284 982.2 609 82.3
Actinidia18385 Actinidia chinensis HOM05D004038 ORTHO05D004619 5.1e-284 980.7 605 81.8
MBI07_g27881_MAGBIO Magnolia biondii HOM05D004038 ORTHO05D004619 5.1e-284 980.7 621 81.2
Sabra07G0114900 Salix brachista HOM05D004038 ORTHO05D004619 8.7e-284 979.9 602 81.9
COL.COLO4_14407 Corchorus olitorius HOM05D004038 ORTHO05D004619 4.3e-283 977.6 592 84.1
Lj6A289T17 Lonicera japonica HOM05D004038 ORTHO05D004619 4.3e-283 977.6 616 82.5
TWI63G0698 Tripterygium wilfordii HOM05D004038 ORTHO05D004619 4.3e-283 977.6 616 81.3
Gohir.D13G095500 Gossypium hirsutum HOM05D004038 ORTHO05D004619 2.1e-282 975.3 608 81.7
Duzib106G0840 Durio zibethinus HOM05D004038 ORTHO05D004619 4.8e-282 974.2 615 80.8
Gorai.001G247600 Gossypium raimondii HOM05D004038 ORTHO05D004619 8.2e-282 973.4 608 81.6
Potri.017G001300 Populus trichocarpa HOM05D004038 ORTHO05D004619 5.3e-281 970.7 619 80.9
PGSC0003DMG400013719 Solanum tuberosum HOM05D004038 ORTHO05D004619 1.2e-280 969.5 606 82.2
ClCG08G010220 Citrullus lanatus HOM05D004038 ORTHO05D004619 2.6e-280 968.4 624 79.8
TAR636G2134 Trochodendron aralioides HOM05D004038 ORTHO05D004619 5.9e-280 967.2 602 82.1
CAN.G68.3 Capsicum annuum HOM05D004038 ORTHO05D004619 7.6e-280 966.8 621 80.4
VMungo1215G2173 Vigna mungo HOM05D004038 ORTHO05D004619 7.6e-280 966.8 602 81.6
Rhsim09G0001600 Rhododendron simsii HOM05D004038 ORTHO05D004619 1.3e-279 966.1 606 81.0
MELO3C011438.2 Cucumis melo HOM05D004038 ORTHO05D004619 1.7e-279 965.7 604 81.3
Gohir.A13G079100 Gossypium hirsutum HOM05D004038 ORTHO05D004619 1.7e-279 965.7 608 80.9
Solyc08g015780.3 Solanum lycopersicum HOM05D004038 ORTHO05D004619 2.2e-279 965.3 606 82.0
Nitab4.5_0012258g0010 Nicotiana tabacum HOM05D004038 ORTHO05D004619 3.8e-279 964.5 618 80.4
Oeu061885.1 Olea europaea HOM05D004038 ORTHO05D004619 6.5e-279 963.8 599 82.3
MBI10_g31866_MAGBIO Magnolia biondii HOM05D004038 ORTHO05D004619 1.1e-278 963.0 602 82.4
Phvul.003G074400 Phaseolus vulgaris HOM05D004038 ORTHO05D004619 1.4e-278 962.6 602 81.2
Sopen08g005950 Solanum pennellii HOM05D004038 ORTHO05D004619 4.2e-278 961.1 606 81.7
CsaV3_6G032420 Cucumis sativus L. HOM05D004038 ORTHO05D004619 5.5e-278 960.7 597 81.6
Glyma.17G000500 Glycine max HOM05D004038 ORTHO05D004619 7.9e-277 956.8 597 81.2
vmacro00732 Vaccinium macrocarpon HOM05D004038 ORTHO05D004619 1.0e-276 956.4 606 80.7
Glyma.07G273900 Glycine max HOM05D004038 ORTHO05D004619 1.5e-275 952.6 600 80.3
Lj4g0009662 Lotus japonicus HOM05D004038 ORTHO05D004619 1.9e-275 952.2 602 80.7
PGSC0003DMG402006465 Solanum tuberosum HOM05D004038 ORTHO05D004619 2.4e-273 945.3 612 80.4
Sed0003085 Sechium edule HOM05D004038 ORTHO05D004619 9.1e-273 943.3 625 77.8
Nitab4.5_0008814g0010 Nicotiana tabacum HOM05D004038 ORTHO05D004619 2.2e-271 938.7 590 81.2
Solyc12g017540.2 Solanum lycopersicum HOM05D004038 ORTHO05D004619 2.9e-271 938.3 611 79.9
Aqoxy2G04186 Aquilegia oxysepala HOM05D004038 ORTHO05D004619 6.5e-271 937.2 574 81.5
Nitab4.5_0000219g0020 Nicotiana tabacum HOM05D004038 ORTHO05D004619 8.5e-271 936.8 593 81.1
Sc19g0002460 Simmondsia chinensis HOM05D004038 ORTHO05D004619 5.5e-270 934.1 604 79.6
Migut.N03013 Erythranthe guttata HOM05D004038 ORTHO05D004619 7.9e-269 930.2 619 78.0
Migut.O00491 Erythranthe guttata HOM05D004038 ORTHO05D004619 2.3e-268 928.7 619 78.0
Eucgr.A00409 Eucalyptus grandis HOM05D004038 ORTHO05D004619 2.3e-268 928.7 588 79.9
MSTRG.22058 Avicennia marina HOM05D004038 ORTHO05D004619 5.1e-268 927.5 614 78.7
PSO170G2946 Papaver somniferum HOM05D004038 ORTHO05D004619 5.1e-268 927.5 640 75.8
Sopen12g008310 Solanum pennellii HOM05D004038 ORTHO05D004619 5.7e-267 924.1 603 79.8
MSTRG.24543 Avicennia marina HOM05D004038 ORTHO05D004619 1.3e-266 922.9 606 78.4
PSO357G0424 Papaver somniferum HOM05D004038 ORTHO05D004619 4.8e-266 921.0 634 75.9
HanXRQChr01g0023591 Helianthus annuus HOM05D004038 ORTHO05D004619 6.3e-266 920.6 593 80.4
Ca_13541_v3 Cicer arietinum L. HOM05D004038 ORTHO05D004619 6.9e-265 917.1 602 77.2
DCAR_023794 Daucus carota HOM05D004038 ORTHO05D004619 5.9e-264 914.1 590 78.6
AUR62023688 Chenopodium quinoa HOM05D004038 ORTHO05D004619 3.8e-263 911.4 615 75.9
Medtr4g134960 Medicago truncatula HOM05D004038 ORTHO05D004619 5.0e-263 911.0 594 77.8
Hund12302 Selenicereus undatus HOM05D004038 ORTHO05D004619 4.7e-261 904.4 602 76.7
Peaxi162Scf00057g00179 Petunia axillaris HOM05D004038 ORTHO05D004619 7.4e-259 897.1 553 83.2
Lalb_Chr13g0304471 Lupinus albus HOM05D004038 ORTHO05D004619 1.1e-257 893.3 595 76.3
MD02G1000800 Malus domestica HOM05D004038 ORTHO05D004619 5.3e-257 891.0 601 76.9
CANSAT56G2502 Cannabis sativa HOM05D004038 ORTHO05D004619 1.6e-256 889.4 526 84.8
Nn7g37426 Nelumbo nucifera HOM05D004038 ORTHO05D004619 3.5e-256 888.3 540 83.5
Ah.07g203340 Amaranthus hybridus HOM05D004038 ORTHO05D004619 1.9e-254 882.5 591 75.6
Cc03_g15890 Coffea canephora HOM05D004038 ORTHO05D004619 7.2e-254 880.6 577 77.3
THA.LOC104802352 Tarenaya hassleriana HOM05D004038 ORTHO05D004619 9.4e-254 880.2 606 75.7
EL10Ac3g06184 Beta vulgaris HOM05D004038 ORTHO05D004619 8.8e-252 873.6 671 68.4
Psat4g001200 Pisum sativum HOM05D004038 ORTHO05D004619 1.2e-251 873.2 593 75.0
unitig_27.g25138 Utricularia gibba HOM05D004038 ORTHO05D004619 8.2e-250 867.1 624 73.4
Aa31LG1G25740 Aethionema arabicum HOM05D004038 ORTHO05D004619 3.1e-249 865.1 608 74.5
SalBow3G0041 Salvia bowleyana HOM05D004038 ORTHO05D004619 1.2e-248 863.2 617 73.3
Thhalv10001361m.g Eutrema salsugineum HOM05D004038 ORTHO05D004619 1.0e-247 860.1 607 73.6
arahy.Tifrunner.gnm1.ann1.BTB9WU Arachis hypogaea HOM05D004038 ORTHO05D004619 1.7e-247 859.4 564 77.8
AUR62002499 Chenopodium quinoa HOM05D004038 ORTHO05D004619 2.9e-247 858.6 619 72.2
arahy.Tifrunner.gnm1.ann1.7FI9ND Arachis hypogaea HOM05D004038 ORTHO05D004619 6.5e-247 857.4 560 78.0
AT3G59910 Arabidopsis thaliana HOM05D004038 ORTHO05D004619 2.3e-244 849.0 594 74.9
CARHR170240 Cardamine hirsuta HOM05D004038 ORTHO05D004619 4.0e-244 848.2 611 73.0
Thhalv10005846m.g Eutrema salsugineum HOM05D004038 ORTHO05D004619 4.4e-243 844.7 569 76.6
Migut.G00797 Erythranthe guttata HOM05D004038 ORTHO05D004619 1.7e-242 842.8 612 72.2
Sp4g26170 Schrenkiella parvula HOM05D004038 ORTHO05D004619 4.8e-242 841.3 606 73.1
AL5G42070 Arabidopsis lyrata HOM05D004038 ORTHO05D004619 1.4e-241 839.7 598 74.1
BcaC07g40397 Brassica carinata HOM05D004038 ORTHO05D004619 1.1e-238 830.1 597 73.2
BraA09t40655Z Brassica rapa HOM05D004038 ORTHO05D004619 1.5e-238 829.7 600 72.8
Sp5g03260 Schrenkiella parvula HOM05D004038 ORTHO05D004619 1.5e-238 829.7 594 73.7
Ah.13g073130 Amaranthus hybridus HOM05D004038 ORTHO05D004619 2.5e-238 828.9 587 72.9
C08p34910 Brassica napus HOM05D004038 ORTHO05D004619 3.2e-238 828.6 600 73.0
A09p52260 Brassica napus HOM05D004038 ORTHO05D004619 4.2e-238 828.2 600 72.7
Carub.0005s2665 Capsella rubella HOM05D004038 ORTHO05D004619 1.2e-237 826.6 611 72.3
PGR042G1685 Punica granatum HOM05D004038 ORTHO05D004619 2.1e-237 825.9 612 69.3
Rhsim09G0010000 Rhododendron simsii HOM05D004038 ORTHO05D004619 2.1e-237 825.9 610 73.0
BraA05t19406Z Brassica rapa HOM05D004038 ORTHO05D004619 3.6e-237 825.1 580 74.1
BcaC07g40545 Brassica carinata HOM05D004038 ORTHO05D004619 4.7e-237 824.7 600 72.3
BolC8t51093H Brassica oleracea HOM05D004038 ORTHO05D004619 4.7e-237 824.7 600 72.3
Aa31LG10G14160 Aethionema arabicum HOM05D004038 ORTHO05D004619 2.3e-236 822.4 600 72.2
BcaB02g08921 Brassica carinata HOM05D004038 ORTHO05D004619 4.0e-236 821.6 615 70.4
A05p04210 Brassica napus HOM05D004038 ORTHO05D004619 2.6e-235 818.9 602 71.8
AT2G44090 Arabidopsis thaliana HOM05D004038 ORTHO05D004619 1.3e-234 816.6 592 72.0
C04p04970 Brassica napus HOM05D004038 ORTHO05D004619 1.6e-232 809.7 578 73.5
BcaC02g12341 Brassica carinata HOM05D004038 ORTHO05D004619 8.6e-231 803.9 575 73.4
BolC4t22128H Brassica oleracea HOM05D004038 ORTHO05D004619 8.6e-231 803.9 575 73.4
Lsat_1_v5_gn_1_77161 Lactuca sativa HOM05D004038 ORTHO05D004619 9.5e-230 800.4 614 71.0
SGA_v2.0_scaffold19G08904 Striga asiatica HOM05D004038 ORTHO05D004619 1.0e-228 797.0 556 75.4
SEGI_02142 Sequoiadendron giganteum HOM05D004038 ORTHO05D004619 2.7e-224 782.3 535 74.2
TPR.G5970 Trifolium pratense HOM05D004038 ORTHO05D004619 2.3e-223 779.2 524 76.5
AL4G42970 Arabidopsis lyrata HOM05D004038 ORTHO05D004619 8.6e-223 777.3 605 68.8
CDE09G0082 Ceratophyllum demersum HOM05D004038 ORTHO05D004619 9.5e-222 773.9 538 72.5
CDE08G0097 Ceratophyllum demersum HOM05D004038 ORTHO05D004619 6.2e-221 771.2 577 69.5
ATR0743G108 Amborella trichopoda HOM05D004038 ORTHO05D004619 2.6e-219 765.8 603 66.7
Os11g0246900 Oryza sativa ssp. japonica HOM05D004038 ORTHO05D004619 1.4e-217 760.0 527 72.1
BcaC02g07135 Brassica carinata HOM05D004038 ORTHO05D004619 2.0e-216 756.1 527 72.9
ATR0225G045 Amborella trichopoda HOM05D004038 ORTHO05D004619 6.0e-216 754.6 519 74.8
HPP92_001964 Vanilla planifolia HOM05D004038 ORTHO05D004619 5.0e-215 751.5 603 67.0
Zm00001eb168270 Zea mays HOM05D004038 ORTHO05D004619 3.6e-213 745.3 605 64.6
ECA248G0282 Erigeron canadensis HOM05D004038 ORTHO05D004619 6.8e-212 741.1 591 69.7
FAN23G2340 Fragaria x ananassa HOM05D004038 ORTHO05D004619 1.1e-209 733.8 408 88.7
Cc03_g15910 Coffea canephora HOM05D004038 ORTHO05D004619 1.4e-209 733.4 421 86.7
SalBow6G2055 Salvia bowleyana HOM05D004038 ORTHO05D004619 1.8e-204 716.5 410 86.3
Mapoly0053s0086 Marchantia polymorpha HOM05D004038 ORTHO05D004619 1.2e-203 713.8 523 70.2
Pp3c24_10000 Physcomitrium patens HOM05D004038 ORTHO05D004619 2.9e-202 709.1 564 65.8
HPP92_004656 Vanilla planifolia HOM05D004038 ORTHO05D004619 1.9e-201 706.4 606 63.5
Oeu050303.2 Olea europaea HOM05D004038 ORTHO05D004619 7.1e-201 704.5 418 84.9
Pp3c23_11480 Physcomitrium patens HOM05D004038 ORTHO05D004619 1.2e-200 703.7 527 69.1
Pp3c20_17330 Physcomitrium patens HOM05D004038 ORTHO05D004619 1.7e-199 699.9 539 67.3
AagrBONN_evm.TU.Sc2ySwM_344.984 Anthoceros agrestis HOM05D004038 ORTHO05D004619 3.5e-192 675.6 513 68.6
SMO361G0247 Selaginella moellendorffii HOM05D004038 ORTHO05D004619 7.8e-192 674.5 495 69.5
Pp3c23_5610 Physcomitrium patens HOM05D004038 ORTHO05D004619 1.3e-191 673.7 528 66.3
SMO266G0055 Selaginella moellendorffii HOM05D004038 ORTHO05D004619 1.6e-189 666.8 528 65.0
Actinidia34559 Actinidia chinensis HOM05D004038 ORTHO05D004619 2.6e-187 659.4 459 76.5
Zm00001eb244150 Zea mays HOM05D004038 ORTHO05D004619 3.9e-167 592.4 573 54.6
MD01G1124800 Malus domestica HOM05D004038 ORTHO05D004619 1.3e-162 577.4 532 60.9
CARHR139240 Cardamine hirsuta HOM05D004038 ORTHO05D004619 1.6e-160 570.5 382 75.7
Os02g0562400 Oryza sativa ssp. japonica HOM05D004038 ORTHO05D004619 2.8e-157 559.7 476 60.3
Nn1g09401 Nelumbo nucifera HOM05D004038 ORTHO05D004619 4.1e-156 555.8 338 83.1
FAN23G0195 Fragaria x ananassa HOM05D004038 ORTHO05D004619 1.3e-149 534.3 340 81.5
CDE02G2909 Ceratophyllum demersum HOM05D004038 ORTHO05D004619 3.2e-137 493.0 465 58.3
Carub.0004s2664 Capsella rubella HOM05D004038 ORTHO05D004619 3.2e-108 396.7 239 81.2
PGSC0003DMG401006465 Solanum tuberosum HOM05D004038 ORTHO05D004619 1.0e-74 285.4 157 89.8
BcaB02g10668 Brassica carinata HOM05D004038 ORTHO05D004619 7.1e-68 262.7 152 87.5
C04p70890 Brassica napus HOM05D000190 ORTHO05D000113 7.9e-51 206.1 166 63.3
BolC4t28590H Brassica oleracea HOM05D000190 ORTHO05D000113 1.6e-48 198.4 169 59.2
A04p33200 Brassica napus HOM05D000190 ORTHO05D000113 1.8e-47 194.9 166 59.6
BraA04t18779Z Brassica rapa HOM05D000190 ORTHO05D000113 1.2e-46 192.2 166 59.0
Oeu038224.1 Olea europaea HOM05D003383 ORTHO05D003890 2.2e-40 171.4 123 69.9
FvH4_6g21450 Fragaria vesca HOM05D004038 ORTHO05D004619 4.5e-38 163.7 98 86.7
ATR1120G077 Amborella trichopoda HOM05D004884 ORTHO05D005873 9.4e-28 129.4 94 69.1
ATR0115G008 Amborella trichopoda HOM05D004038 ORTHO05D004619 1.3e-24 119.0 94 63.8
Oeu023156.1 Olea europaea HOM05D004038 ORTHO05D004619 1.6e-22 112.1 115 54.8
Pp3c1_34260 Physcomitrium patens HOM05D004038 ORTHO05D004619 2.9e-21 107.8 312 29.2
FvH4_5g21451 Fragaria vesca HOM05D004038 ORTHO05D004619 1.2e-19 102.4 60 85.0
Pp3c14_7650 Physcomitrium patens HOM05D004038 ORTHO05D004619 2.1e-19 101.7 493 23.5
CBR_g40501 Chara braunii HOM05D004038 ORTHO05D004619 2.0e-17 95.1 126 40.5
SGA_v2.0_scaffold158G37520 Striga asiatica HOM05D004038 ORTHO05D004619 9.7e-17 92.8 86 55.8
Pp3c10_11360 Physcomitrium patens HOM05D004038 ORTHO05D004619 3.7e-16 90.9 190 31.6
SGA_v2.0_scaffold18G08543 Striga asiatica HOM05D004038 ORTHO05D004619 1.2e-14 85.9 100 53.0
Pp3c1_7290 Physcomitrium patens HOM05D004038 ORTHO05D004619 6.5e-13 80.1 188 34.0
SGA_v2.0_scaffold10G05092 Striga asiatica HOM05D020555 ORTHO05D004619 4.2e-12 77.4 70 68.6
ATR0665G114 Amborella trichopoda HOM05D004038 ORTHO05D004619 4.7e-11 73.9 74 59.5
SHI01462 Sapria himalayana HOM05D004038 ORTHO05D004619 1.5e-09 68.9 56 55.4
ATR0624G069 Amborella trichopoda HOM05D004038 ORTHO05D004619 8.3e-08 63.2 74 48.6


User provided reference genes

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