Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.01G179400 Carya illinoinensis HOM05D005475 ORTHO05D006575 3.8e-48 194.5 97 100.0
CiPaw.02G108100 Carya illinoinensis HOM05D005475 ORTHO05D006575 2.4e-39 165.2 97 84.5
Cfa014769 Carpinus fangiana HOM05D005475 ORTHO05D006575 8.1e-35 150.2 97 76.3
MD16G1224800 Malus domestica HOM05D005475 ORTHO05D006575 2.7e-30 135.2 100 69.0
Prupe.1G046100 Prunus persica HOM05D005475 ORTHO05D006575 3.5e-30 134.8 98 71.4
MD13G1219400 Malus domestica HOM05D005475 ORTHO05D006575 2.3e-29 132.1 101 70.3
QL06p020702 Quercus lobata HOM05D005475 ORTHO05D006575 3.0e-29 131.7 96 71.9
COL.COLO4_15946 Corchorus olitorius HOM05D005475 ORTHO05D006575 2.5e-28 128.6 100 64.0
TWI73G1305 Tripterygium wilfordii HOM05D005475 ORTHO05D006575 4.3e-28 127.9 94 70.2
Phvul.007G271300 Phaseolus vulgaris HOM05D005475 ORTHO05D006575 2.8e-27 125.2 100 66.0
ClCG05G004080 Citrullus lanatus HOM05D005475 ORTHO05D006575 6.2e-27 124.0 97 62.9
Glyma.10G136600 Glycine max HOM05D005475 ORTHO05D006575 8.1e-27 123.6 96 65.6
Duzib212G0290 Durio zibethinus HOM05D005475 ORTHO05D006575 1.1e-26 123.2 100 66.0
Thecc.04G261900 Theobroma cacao HOM05D005475 ORTHO05D006575 4.0e-26 121.3 100 65.0
Gohir.A02G042200 Gossypium hirsutum HOM05D005475 ORTHO05D006575 5.3e-26 120.9 95 64.2
Gorai.005G053100 Gossypium raimondii HOM05D005475 ORTHO05D006575 1.2e-25 119.8 95 64.2
Gohir.D02G047800 Gossypium hirsutum HOM05D005475 ORTHO05D006575 1.5e-25 119.4 95 63.2
Ca_11926_v3 Cicer arietinum L. HOM05D005475 ORTHO05D006575 2.6e-25 118.6 76 78.9
Psat6g107160 Pisum sativum HOM05D005475 ORTHO05D006575 3.4e-25 118.2 102 62.7
Dinv27096 Davidia involucrata HOM05D005475 ORTHO05D006575 2.2e-24 115.5 91 69.2
Sed0012950 Sechium edule HOM05D005475 ORTHO05D006575 3.8e-24 114.8 97 60.8
Sed0016324 Sechium edule HOM05D005475 ORTHO05D006575 3.8e-24 114.8 97 60.8
Atru.chr4.1933 Acer truncatum HOM05D005475 ORTHO05D006575 1.4e-23 112.8 100 61.0
CANSAT78G0624 Cannabis sativa HOM05D005475 ORTHO05D006575 4.2e-23 111.3 98 61.2
GSVIVG01027899001 Vitis vinifera HOM05D005475 ORTHO05D006575 7.1e-23 110.5 80 68.8
TAR362G0816 Trochodendron aralioides HOM05D005475 ORTHO05D006575 9.3e-23 110.2 97 60.8
Hma1.2p1_0385F.1_g141450 Hydrangea macrophylla HOM05D005475 ORTHO05D006575 1.6e-22 109.4 91 64.8
Potri.010G067200 Populus trichocarpa HOM05D005475 ORTHO05D006575 2.1e-22 109.0 94 59.6
Actinidia11364 Actinidia chinensis HOM05D005475 ORTHO05D006575 3.5e-22 108.2 103 57.3
CSS0013344 Camellia sinensis var. sinensis HOM05D005475 ORTHO05D006575 7.9e-22 107.1 106 57.5
Ciclev10006301m.g Citrus clementina HOM05D005475 ORTHO05D006575 1.3e-21 106.3 94 59.6
THA.LOC104816000 Tarenaya hassleriana HOM05D005475 ORTHO05D006575 6.7e-21 104.0 95 53.7
Lalb_Chr19g0128471 Lupinus albus HOM05D005475 ORTHO05D006575 8.7e-21 103.6 103 59.2
RcHm_v2.0_Chr4g0394791 Rosa chinensis HOM05D005475 ORTHO05D006575 8.7e-21 103.6 61 78.7
Aa31LG5G3900 Aethionema arabicum HOM05D005475 ORTHO05D006575 1.5e-20 102.8 100 54.0
FAN17G2060 Fragaria x ananassa HOM05D005475 ORTHO05D006575 3.3e-20 101.7 101 53.5
MELO3C006388.2 Cucumis melo HOM05D000730 ORTHO05D000578 4.3e-20 101.3 122 47.5
Gohir.D10G159400 Gossypium hirsutum HOM05D005475 ORTHO05D006575 4.3e-20 101.3 99 56.6
Gorai.011G179000 Gossypium raimondii HOM05D005475 ORTHO05D006575 4.3e-20 101.3 99 56.6
CAN.G220.90 Capsicum annuum HOM05D005475 ORTHO05D006575 5.6e-20 100.9 97 56.7
MBI07_g18714_MAGBIO Magnolia biondii HOM05D005475 ORTHO05D006575 5.6e-20 100.9 98 57.1
Medtr1g045370 Medicago truncatula HOM05D005475 ORTHO05D006575 5.6e-20 100.9 77 70.1
Nn3g19747 Nelumbo nucifera HOM05D005475 ORTHO05D006575 5.6e-20 100.9 70 70.0
Thhalv10017471m.g Eutrema salsugineum HOM05D005475 ORTHO05D006575 7.4e-20 100.5 100 51.0
Lj6g0010293 Lotus japonicus HOM05D005475 ORTHO05D006575 7.4e-20 100.5 104 56.7
Rhsim02G0042800 Rhododendron simsii HOM05D005475 ORTHO05D006575 9.6e-20 100.1 103 58.3
Hma1.2p1_0112F.1_g054570 Hydrangea macrophylla HOM05D005475 ORTHO05D006575 1.3e-19 99.8 100 57.0
Aa31LG1G20410 Aethionema arabicum HOM05D005475 ORTHO05D006575 1.6e-19 99.4 94 51.1
Carub.0004s1502 Capsella rubella HOM05D005475 ORTHO05D006575 1.6e-19 99.4 100 50.0
Gohir.A10G108400 Gossypium hirsutum HOM05D005475 ORTHO05D006575 1.6e-19 99.4 99 55.6
AL4G29060 Arabidopsis lyrata HOM05D005475 ORTHO05D006575 3.7e-19 98.2 100 49.0
Phvul.L002444 Phaseolus vulgaris HOM05D005475 ORTHO05D006575 3.7e-19 98.2 87 59.8
Solyc09g090540.3 Solanum lycopersicum HOM05D005475 ORTHO05D006575 4.8e-19 97.8 97 55.7
Glyma.20G201100 Glycine max HOM05D005475 ORTHO05D006575 6.2e-19 97.4 87 59.8
Glyma.10G189800 Glycine max HOM05D005475 ORTHO05D006575 1.1e-18 96.7 87 60.9
vmacro08540 Vaccinium macrocarpon HOM05D005475 ORTHO05D006575 1.8e-18 95.9 103 53.4
AT2G33390 Arabidopsis thaliana HOM05D005475 ORTHO05D006575 2.4e-18 95.5 100 49.0
CARHR127400 Cardamine hirsuta HOM05D005475 ORTHO05D006575 2.4e-18 95.5 97 48.5
Duzib151G0481 Durio zibethinus HOM05D005475 ORTHO05D006575 2.4e-18 95.5 74 64.9
Peaxi162Scf00033g02837 Petunia axillaris HOM05D005475 ORTHO05D006575 2.4e-18 95.5 69 66.7
VMungo0720G1758 Vigna mungo HOM05D005475 ORTHO05D006575 2.4e-18 95.5 87 58.6
Medtr1g073660 Medicago truncatula HOM05D005475 ORTHO05D006575 3.1e-18 95.1 100 57.0
Potri.008G170700 Populus trichocarpa HOM05D005475 ORTHO05D006575 3.1e-18 95.1 95 54.7
Sp4g15710 Schrenkiella parvula HOM05D005475 ORTHO05D006575 3.1e-18 95.1 94 47.9
Psat6g117200 Pisum sativum HOM05D005475 ORTHO05D006575 4.0e-18 94.7 102 55.9
Sabra08G0130500 Salix brachista HOM05D005475 ORTHO05D006575 4.0e-18 94.7 77 59.7
Nitab4.5_0001051g0090 Nicotiana tabacum HOM05D005475 ORTHO05D006575 6.9e-18 94.0 98 52.0
PSO674G0109 Papaver somniferum HOM05D005475 ORTHO05D006575 6.9e-18 94.0 104 51.9
PSO832G2786 Papaver somniferum HOM05D005475 ORTHO05D006575 6.9e-18 94.0 104 51.9
Eucgr.H02964 Eucalyptus grandis HOM05D005475 ORTHO05D006575 9.0e-18 93.6 96 55.2
Actinidia39922 Actinidia chinensis HOM05D005475 ORTHO05D006575 1.2e-17 93.2 103 51.5
Nitab4.5_0002709g0070 Nicotiana tabacum HOM05D005475 ORTHO05D006575 1.5e-17 92.8 98 51.0
Glyma.20G086200 Glycine max HOM05D005475 ORTHO05D006575 2.6e-17 92.0 76 61.8
vmacro15470 Vaccinium macrocarpon HOM05D005475 ORTHO05D006575 3.4e-17 91.7 66 69.7
Manes.15G044300 Manihot esculenta HOM05D005475 ORTHO05D006575 4.5e-17 91.3 77 58.4
Cc03_g06010 Coffea canephora HOM05D005475 ORTHO05D006575 5.8e-17 90.9 76 63.2
MBI10_g38466_MAGBIO Magnolia biondii HOM05D005475 ORTHO05D006575 5.8e-17 90.9 103 58.3
Hund03078 Selenicereus undatus HOM05D005475 ORTHO05D006575 5.8e-17 90.9 66 65.2
CsaV3_3G011800 Cucumis sativus L. HOM05D005475 ORTHO05D006575 7.6e-17 90.5 74 62.2
BcaB02g10558 Brassica carinata HOM05D005475 ORTHO05D006575 1.3e-16 89.7 102 47.1
Manes.03G160400 Manihot esculenta HOM05D005475 ORTHO05D006575 1.3e-16 89.7 97 50.5
TPR.G28846 Trifolium pratense HOM05D005475 ORTHO05D006575 1.7e-16 89.4 83 60.2
Actinidia20831 Actinidia chinensis HOM05D005475 ORTHO05D006575 2.2e-16 89.0 95 51.6
PGR031G0084 Punica granatum HOM05D005475 ORTHO05D006575 4.9e-16 87.8 104 50.0
TPR.G27310 Trifolium pratense HOM05D005475 ORTHO05D006575 4.9e-16 87.8 58 75.9
Aqoxy2G03723 Aquilegia oxysepala HOM05D005475 ORTHO05D006575 1.1e-15 86.7 94 50.0
Lj5g0027748 Lotus japonicus HOM05D005475 ORTHO05D006575 1.1e-15 86.7 85 57.6
Lalb_Chr03g0037011 Lupinus albus HOM05D005475 ORTHO05D006575 4.2e-15 84.7 120 42.5
PGSC0003DMG400017155 Solanum tuberosum HOM05D005475 ORTHO05D006575 4.2e-15 84.7 97 50.5
FAN12G1687 Fragaria x ananassa HOM05D005475 ORTHO05D006575 5.5e-15 84.3 92 53.3
Migut.N00292 Erythranthe guttata HOM05D005475 ORTHO05D006575 7.1e-15 84.0 98 46.9
Sopen09g033470 Solanum pennellii HOM05D005475 ORTHO05D006575 9.3e-15 83.6 97 50.5
C04p15700 Brassica napus HOM05D005475 ORTHO05D006575 2.1e-14 82.4 61 62.3
BolC4t23138H Brassica oleracea HOM05D005475 ORTHO05D006575 2.1e-14 82.4 61 62.3
ECA248G3571 Erigeron canadensis HOM05D000730 ORTHO05D000578 2.7e-14 82.0 70 57.1
SalBow3G2868 Salvia bowleyana HOM05D005475 ORTHO05D006575 2.7e-14 82.0 65 55.4
BraA05t20157Z Brassica rapa HOM05D005475 ORTHO05D006575 4.6e-14 81.3 91 45.1
Lsat_1_v5_gn_1_75221 Lactuca sativa HOM05D005475 ORTHO05D006575 4.6e-14 81.3 74 54.1
A05p12130 Brassica napus HOM05D005475 ORTHO05D006575 6.0e-14 80.9 61 60.7
Lalb_Chr06g0169471 Lupinus albus HOM05D005475 ORTHO05D006575 6.0e-14 80.9 84 56.0
BcaC02g11426 Brassica carinata HOM05D005475 ORTHO05D006575 7.9e-14 80.5 60 60.0
CSS0022443 Camellia sinensis var. sinensis HOM05D005475 ORTHO05D006575 7.9e-14 80.5 80 56.2
CDE08G0603 Ceratophyllum demersum HOM05D005475 ORTHO05D006575 7.9e-14 80.5 89 50.6
Sabra10G0040200 Salix brachista HOM05D005475 ORTHO05D006575 1.1e-12 76.6 79 54.4
BcaB06g28682 Brassica carinata HOM05D005475 ORTHO05D006575 3.3e-12 75.1 54 63.0
Rhsim04G0173600 Rhododendron simsii HOM05D005475 ORTHO05D006575 7.4e-12 73.9 126 41.3
FvH4_4g04340 Fragaria vesca HOM05D005475 ORTHO05D006575 9.7e-12 73.6 82 50.0
FAN22G1457 Fragaria x ananassa HOM05D005475 ORTHO05D006575 2.2e-11 72.4 81 49.4
A03p18710 Brassica napus HOM05D005475 ORTHO05D006575 2.8e-11 72.0 54 59.3
A04p25690 Brassica napus HOM05D005475 ORTHO05D006575 2.8e-11 72.0 54 59.3
BraA03t11131Z Brassica rapa HOM05D005475 ORTHO05D006575 2.8e-11 72.0 54 59.3
BraA04t18073Z Brassica rapa HOM05D005475 ORTHO05D006575 2.8e-11 72.0 54 59.3
BcaC02g07831 Brassica carinata HOM05D005475 ORTHO05D006575 3.7e-11 71.6 54 57.4
C04p62850 Brassica napus HOM05D005475 ORTHO05D006575 3.7e-11 71.6 54 57.4
BolC4t27768H Brassica oleracea HOM05D005475 ORTHO05D006575 3.7e-11 71.6 54 57.4
RcHm_v2.0_Chr4g0394821 Rosa chinensis HOM05D005475 ORTHO05D006575 4.8e-11 71.2 41 78.0
C03p21860 Brassica napus HOM05D005475 ORTHO05D006575 8.2e-11 70.5 54 59.3
BolC3t14568H Brassica oleracea HOM05D005475 ORTHO05D006575 8.2e-11 70.5 54 59.3
HanXRQChr01g0022901 Helianthus annuus HOM05D005475 ORTHO05D006575 8.2e-11 70.5 47 70.2
FAN22G0728 Fragaria x ananassa HOM05D005475 ORTHO05D006575 1.4e-10 69.7 82 50.0
TAR365G0748 Trochodendron aralioides HOM05D005475 ORTHO05D006575 1.8e-10 69.3 75 53.3
Lalb_Chr02g0150621 Lupinus albus HOM05D005475 ORTHO05D006575 2.4e-10 68.9 54 64.8
BcaC01g05844 Brassica carinata HOM05D005475 ORTHO05D006575 3.1e-10 68.6 53 56.6
unitig_26.g9548 Utricularia gibba HOM05D005475 ORTHO05D006575 9.0e-10 67.0 110 38.2
AUR62002181 Chenopodium quinoa HOM05D005475 ORTHO05D006575 1.2e-09 66.6 94 46.8
AUR62015529 Chenopodium quinoa HOM05D005475 ORTHO05D006575 1.2e-09 66.6 94 46.8
Sc13g0006140 Simmondsia chinensis HOM05D005475 ORTHO05D006575 2.0e-09 65.9 50 68.0
Sed0016405 Sechium edule HOM05D005475 ORTHO05D006575 3.4e-09 65.1 70 55.7
BcaC07g37337 Brassica carinata HOM05D005475 ORTHO05D006575 7.6e-09 63.9 58 53.4
C08p07780 Brassica napus HOM05D005475 ORTHO05D006575 7.6e-09 63.9 58 53.4
BolC8t47626H Brassica oleracea HOM05D005475 ORTHO05D006575 7.6e-09 63.9 58 53.4
Nn1g02914 Nelumbo nucifera HOM05D005475 ORTHO05D006575 1.3e-08 63.2 72 51.4
unitig_749.g13516 Utricularia gibba HOM05D005475 ORTHO05D006575 3.8e-08 61.6 104 35.6
Os03g0138400 Oryza sativa ssp. japonica HOM05D005475 ORTHO05D006575 1.1e-07 60.1 53 54.7
HPP92_007739 Vanilla planifolia HOM05D005475 ORTHO05D006575 1.9e-07 59.3 38 68.4
Ah.04g155370 Amaranthus hybridus HOM05D005475 ORTHO05D006575 7.2e-07 57.4 68 54.4
DCAR_027337 Daucus carota HOM05D005475 ORTHO05D006575 6.1e-06 54.3 46 56.5
Sed0020032 Sechium edule HOM05D007392 ORTHO05D009181 7.9e-06 53.9 97 37.1


User provided reference genes

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