Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.01G176900 Carya illinoinensis HOM05D005102 ORTHO05D006090 4.1e-154 548.1 294 100.0
Cfa014795 Carpinus fangiana HOM05D005102 ORTHO05D006090 2.5e-127 459.1 294 85.4
Haze_11479 Corylus avellana HOM05D005102 ORTHO05D006090 4.7e-126 454.9 294 84.7
QL08p018871 Quercus lobata HOM05D005102 ORTHO05D006090 6.1e-126 454.5 293 84.6
QL06p021548 Quercus lobata HOM05D005102 ORTHO05D006090 1.7e-120 436.4 293 82.6
Ciclev10005541m.g Citrus clementina HOM05D005102 ORTHO05D006090 1.5e-116 423.3 295 77.6
COL.COLO4_15983 Corchorus olitorius HOM05D005102 ORTHO05D006090 8.3e-115 417.5 294 78.2
Duzib052G0859 Durio zibethinus HOM05D005102 ORTHO05D006090 1.6e-113 413.3 294 76.2
Manes.03G102500 Manihot esculenta HOM05D005102 ORTHO05D006090 2.7e-113 412.5 297 76.4
Actinidia37761 Actinidia chinensis HOM05D005102 ORTHO05D006090 3.5e-113 412.1 295 75.3
Thecc.04G266700 Theobroma cacao HOM05D005102 ORTHO05D006090 3.8e-112 408.7 294 76.2
Dinv27121 Davidia involucrata HOM05D005102 ORTHO05D006090 1.1e-111 407.1 282 77.3
Gorai.005G054400 Gossypium raimondii HOM05D005102 ORTHO05D006090 1.0e-109 400.6 294 73.5
Ca_11361_v3 Cicer arietinum L. HOM05D005102 ORTHO05D006090 2.3e-109 399.4 294 74.5
Psat7g046400 Pisum sativum HOM05D005102 ORTHO05D006090 5.2e-109 398.3 294 74.8
TWI09G0526 Tripterygium wilfordii HOM05D005102 ORTHO05D006090 6.8e-109 397.9 294 74.1
FAN18G4219 Fragaria x ananassa HOM05D005102 ORTHO05D006090 1.2e-108 397.1 294 75.2
Gohir.A02G043600 Gossypium hirsutum HOM05D005102 ORTHO05D006090 1.2e-108 397.1 294 72.8
FvH4_5g17100 Fragaria vesca HOM05D005102 ORTHO05D006090 3.4e-108 395.6 294 74.8
FAN08G3625 Fragaria x ananassa HOM05D005102 ORTHO05D006090 3.4e-108 395.6 294 74.5
Lj3g0001784 Lotus japonicus HOM05D005102 ORTHO05D006090 7.5e-108 394.4 294 74.5
FAN04G2658 Fragaria x ananassa HOM05D005102 ORTHO05D006090 9.8e-108 394.0 294 74.1
Prupe.5G230500 Prunus persica HOM05D005102 ORTHO05D006090 1.7e-107 393.3 296 73.3
Lj6g0009036 Lotus japonicus HOM05D005102 ORTHO05D006090 2.2e-107 392.9 294 73.8
FAN13G1436 Fragaria x ananassa HOM05D005102 ORTHO05D006090 6.3e-107 391.3 294 74.1
Psat1g170520 Pisum sativum HOM05D005102 ORTHO05D006090 8.3e-107 391.0 295 72.9
Glyma.15G125200 Glycine max HOM05D005102 ORTHO05D006090 1.4e-106 390.2 294 73.5
CSS0019941 Camellia sinensis var. sinensis HOM05D005102 ORTHO05D006090 3.1e-106 389.0 296 73.3
GSVIVG01027934001 Vitis vinifera HOM05D005102 ORTHO05D006090 5.4e-106 388.3 294 72.8
Glyma.09G019100 Glycine max HOM05D005102 ORTHO05D006090 9.2e-106 387.5 295 74.2
CSS0043447 Camellia sinensis var. sinensis HOM05D005102 ORTHO05D006090 2.0e-105 386.3 296 73.0
Atru.chr12.1207 Acer truncatum HOM05D005102 ORTHO05D006090 3.8e-104 382.1 301 72.4
DCAR_030764 Daucus carota HOM05D005102 ORTHO05D006090 3.8e-104 382.1 296 72.3
Nn3g19843 Nelumbo nucifera HOM05D005102 ORTHO05D006090 6.6e-104 381.3 295 70.8
TPR.G17506 Trifolium pratense HOM05D005102 ORTHO05D006090 1.1e-103 380.6 294 73.1
Eucgr.K00416 Eucalyptus grandis HOM05D005102 ORTHO05D006090 2.5e-103 379.4 262 79.8
Phvul.006G133300 Phaseolus vulgaris HOM05D005102 ORTHO05D006090 3.3e-103 379.0 294 72.8
THA.LOC104808740 Tarenaya hassleriana HOM05D005102 ORTHO05D006090 3.3e-103 379.0 297 73.1
Nitab4.5_0001041g0140 Nicotiana tabacum HOM05D005102 ORTHO05D006090 4.3e-103 378.6 294 71.4
Medtr2g028660 Medicago truncatula HOM05D005102 ORTHO05D006090 8.0e-102 374.4 312 68.6
MD06G1229400 Malus domestica HOM05D005102 ORTHO05D006090 1.4e-101 373.6 295 71.2
RcHm_v2.0_Chr7g0178711 Rosa chinensis HOM05D005102 ORTHO05D006090 4.0e-101 372.1 300 70.0
Potri.010G064900 Populus trichocarpa HOM05D005102 ORTHO05D006090 5.2e-101 371.7 302 70.9
CANSAT78G2207 Cannabis sativa HOM05D005102 ORTHO05D006090 3.7e-99 365.5 299 70.6
TAR365G0288 Trochodendron aralioides HOM05D005102 ORTHO05D006090 4.9e-99 365.2 296 68.6
Aqoxy5G00133 Aquilegia oxysepala HOM05D005102 ORTHO05D006090 1.1e-98 364.0 300 69.0
Nitab4.5_0005154g0050 Nicotiana tabacum HOM05D005102 ORTHO05D006090 1.1e-98 364.0 329 63.8
Lj6A637G59 Lonicera japonica HOM05D005102 ORTHO05D006090 1.8e-98 363.2 359 59.9
VMungo0540G0767 Vigna mungo HOM05D005102 ORTHO05D006090 2.4e-98 362.8 272 73.9
Cc03_g06480 Coffea canephora HOM05D005102 ORTHO05D006090 4.1e-98 362.1 304 66.8
HanXRQChr01g0011201 Helianthus annuus HOM05D005102 ORTHO05D006090 1.7e-96 356.7 296 70.3
Migut.G00562 Erythranthe guttata HOM05D005102 ORTHO05D006090 6.6e-96 354.8 297 68.4
EL10Ac3g06678 Beta vulgaris HOM05D005102 ORTHO05D006090 1.5e-95 353.6 294 68.0
Ah.10g026170 Amaranthus hybridus HOM05D005102 ORTHO05D006090 4.3e-95 352.1 295 66.8
Sabra10G0042100 Salix brachista HOM05D005102 ORTHO05D006090 5.6e-95 351.7 310 66.8
Sopen09g033820 Solanum pennellii HOM05D005102 ORTHO05D006090 5.6e-95 351.7 297 68.7
arahy.Tifrunner.gnm1.ann1.Z186RR Arachis hypogaea HOM05D005102 ORTHO05D006090 9.5e-95 350.9 325 63.1
Aa31LG8G11040 Aethionema arabicum HOM05D005102 ORTHO05D006090 1.2e-94 350.5 296 66.2
AL3G39760 Arabidopsis lyrata HOM05D005102 ORTHO05D006090 2.8e-94 349.4 295 68.8
Solyc09g090860.4 Solanum lycopersicum HOM05D005102 ORTHO05D006090 2.3e-93 346.3 296 67.9
THA.LOC104810405 Tarenaya hassleriana HOM05D005102 ORTHO05D006090 3.1e-93 345.9 262 74.0
AT3G24315 Arabidopsis thaliana HOM05D005102 ORTHO05D006090 5.2e-93 345.1 296 67.9
AUR62018036 Chenopodium quinoa HOM05D005102 ORTHO05D006090 1.2e-92 344.0 295 66.8
Thhalv10002630m.g Eutrema salsugineum HOM05D005102 ORTHO05D006090 1.5e-92 343.6 295 67.1
Rhsim01G0226300 Rhododendron simsii HOM05D005102 ORTHO05D006090 3.4e-92 342.4 320 62.5
BolC7t41674H Brassica oleracea HOM05D005102 ORTHO05D006090 2.9e-91 339.3 297 66.7
Lalb_Chr06g0169571 Lupinus albus HOM05D005102 ORTHO05D006090 3.7e-91 339.0 295 66.1
BcaB06g26613 Brassica carinata HOM05D005102 ORTHO05D006090 4.9e-91 338.6 296 66.2
CAN.G812.17 Capsicum annuum HOM05D005102 ORTHO05D006090 4.9e-91 338.6 294 66.3
BcaC06g35682 Brassica carinata HOM05D005102 ORTHO05D006090 6.4e-91 338.2 297 66.3
A07p08000 Brassica napus HOM05D005102 ORTHO05D006090 6.4e-91 338.2 296 66.2
C07p12060 Brassica napus HOM05D005102 ORTHO05D006090 6.4e-91 338.2 297 66.3
BraA07t28587Z Brassica rapa HOM05D005102 ORTHO05D006090 6.4e-91 338.2 296 66.2
Sp3g22120 Schrenkiella parvula HOM05D005102 ORTHO05D006090 1.1e-90 337.4 297 65.3
Carub.0003s2465 Capsella rubella HOM05D005102 ORTHO05D006090 1.9e-90 336.7 296 65.5
BcaC01g03326 Brassica carinata HOM05D005102 ORTHO05D006090 5.4e-90 335.1 298 65.4
MSTRG.9850 Avicennia marina HOM05D005102 ORTHO05D006090 7.0e-90 334.7 302 64.9
CARHR100410 Cardamine hirsuta HOM05D005102 ORTHO05D006090 9.2e-90 334.3 298 65.4
PSO302G0040 Papaver somniferum HOM05D005102 ORTHO05D006090 9.2e-90 334.3 293 63.1
Sed0020820 Sechium edule HOM05D005102 ORTHO05D006090 9.2e-90 334.3 294 65.6
C03p53630 Brassica napus HOM05D005102 ORTHO05D006090 1.2e-89 334.0 298 65.4
PSO170G5569 Papaver somniferum HOM05D005102 ORTHO05D006090 1.6e-89 333.6 293 63.5
PSO832G1873 Papaver somniferum HOM05D005102 ORTHO05D006090 1.6e-89 333.6 293 64.5
Sc13g0003090 Simmondsia chinensis HOM05D005102 ORTHO05D006090 6.6e-88 328.2 296 63.9
BolC3t17623H Brassica oleracea HOM05D005102 ORTHO05D006090 1.2e-86 323.9 306 63.4
AUR62015240 Chenopodium quinoa HOM05D005102 ORTHO05D006090 1.6e-86 323.6 295 64.4
ClCG06G002570 Citrullus lanatus HOM05D005102 ORTHO05D006090 2.1e-86 323.2 287 64.8
Oeu047122.2 Olea europaea HOM05D005102 ORTHO05D006090 2.1e-86 323.2 386 53.6
PSO764G0108 Papaver somniferum HOM05D005102 ORTHO05D006090 2.1e-86 323.2 294 62.6
Lsat_1_v5_gn_1_75501 Lactuca sativa HOM05D005102 ORTHO05D006090 2.8e-86 322.8 269 66.5
ATR0787G185 Amborella trichopoda HOM05D005102 ORTHO05D006090 6.8e-85 318.2 269 65.1
PGSC0003DMG400001501 Solanum tuberosum HOM05D005102 ORTHO05D006090 2.0e-84 316.6 388 53.1
Gohir.D02G049200 Gossypium hirsutum HOM05D005102 ORTHO05D006090 3.4e-84 315.8 228 75.4
CDE09G0962 Ceratophyllum demersum HOM05D005102 ORTHO05D006090 2.9e-83 312.8 259 66.0
Hund22254 Selenicereus undatus HOM05D005102 ORTHO05D006090 1.9e-82 310.1 360 55.0
Zm00001eb238020 Zea mays HOM05D005102 ORTHO05D006090 4.1e-82 308.9 273 65.2
Os02g0658900 Oryza sativa ssp. japonica HOM05D005102 ORTHO05D006090 4.6e-81 305.4 259 66.0
HPP92_021768 Vanilla planifolia HOM05D005102 ORTHO05D006090 4.6e-81 305.4 255 66.3
A03p43600 Brassica napus HOM05D005102 ORTHO05D006090 1.7e-80 303.5 299 62.5
CDE02G3615 Ceratophyllum demersum HOM05D005102 ORTHO05D006090 9.5e-79 297.7 254 65.4
SGA_v2.0_scaffold127G34013 Striga asiatica HOM05D005102 ORTHO05D006090 4.7e-78 295.4 300 60.7
SGA_v2.0_scaffold454G51888 Striga asiatica HOM05D005102 ORTHO05D006090 3.4e-76 289.3 298 59.4
vmacro04848 Vaccinium macrocarpon HOM05D005102 ORTHO05D006090 2.7e-73 279.6 198 78.3
MELO3C022272.2 Cucumis melo HOM05D005102 ORTHO05D006090 2.3e-72 276.6 299 57.5
CsaV3_6G008560 Cucumis sativus L. HOM05D005102 ORTHO05D006090 1.1e-71 274.2 239 66.9
SGA_v2.0_scaffold193G40717 Striga asiatica HOM05D005102 ORTHO05D006090 9.6e-71 271.2 221 67.9
SEGI_01035 Sequoiadendron giganteum HOM05D005102 ORTHO05D006090 4.0e-69 265.8 250 59.2
TWI63G1490 Tripterygium wilfordii HOM05D005102 ORTHO05D006090 2.2e-67 260.0 215 69.3
Cpa.g.sc59.14 Carica papaya HOM05D005102 ORTHO05D006090 6.4e-67 258.5 183 78.1
BraA03t13497Z Brassica rapa HOM05D005102 ORTHO05D006090 1.1e-66 257.7 298 56.4
vmacro20979 Vaccinium macrocarpon HOM05D005102 ORTHO05D006090 7.8e-65 251.5 307 55.0
Peaxi162Scf00531g00334 Petunia axillaris HOM05D005102 ORTHO05D006090 2.2e-59 233.4 174 73.6
ECA247G3419 Erigeron canadensis HOM05D005102 ORTHO05D006090 5.8e-52 208.8 184 69.0
AagrBONN_evm.TU.Sc2ySwM_228.1541 Anthoceros agrestis HOM05D005102 ORTHO05D006090 4.9e-51 205.7 243 46.1
AagrBONN_evm.TU.Sc2ySwM_368.1701 Anthoceros agrestis HOM05D005102 ORTHO05D006090 6.4e-51 205.3 243 46.1
SalBow2G1408 Salvia bowleyana HOM05D005102 ORTHO05D006090 2.1e-49 200.3 183 63.9
SHI00826 Sapria himalayana HOM05D005102 ORTHO05D006090 1.8e-48 197.2 286 46.5
Mapoly0019s0137 Marchantia polymorpha HOM05D005102 ORTHO05D006090 5.1e-48 195.7 244 47.5
Nitab4.5_0002613g0070 Nicotiana tabacum HOM05D005102 ORTHO05D006090 6.7e-48 195.3 149 72.5
SMO364G0891 Selaginella moellendorffii HOM05D005102 ORTHO05D006090 1.3e-46 191.0 221 49.3
Pp3c27_3370 Physcomitrium patens HOM05D005102 ORTHO05D006090 1.2e-41 174.5 235 43.0
Eucgr.G00566 Eucalyptus grandis HOM05D005102 ORTHO05D006090 2.3e-40 170.2 119 73.9
Zm00001eb048840 Zea mays HOM05D005102 ORTHO05D006090 5.7e-39 165.6 163 60.7
Peaxi162Scf00531g00327 Petunia axillaris HOM05D000868 ORTHO05D000711 2.8e-38 163.3 130 68.5
Phvul.006G132800 Phaseolus vulgaris HOM05D005102 ORTHO05D006090 2.8e-38 163.3 179 55.9
CBR_g37523 Chara braunii HOM05D005102 ORTHO05D006090 7.2e-34 148.7 229 40.6
arahy.Tifrunner.gnm1.ann1.4HQ694 Arachis hypogaea HOM05D005102 ORTHO05D006090 1.8e-32 144.1 119 66.4
CiPaw.02G105900 Carya illinoinensis HOM05D005102 ORTHO05D006090 8.7e-32 141.7 98 76.5
Pp3c16_3280 Physcomitrium patens HOM05D005102 ORTHO05D006090 3.3e-31 139.8 231 41.1
Dinv30772 Davidia involucrata HOM05D005102 ORTHO05D006090 1.2e-28 131.3 80 90.0
Zm00001eb144710 Zea mays HOM05D005102 ORTHO05D006090 7.2e-26 122.1 175 46.9
Zm00001eb188010 Zea mays HOM05D005102 ORTHO05D006090 2.1e-25 120.6 119 58.8
unitig_748.g8293 Utricularia gibba HOM05D005102 ORTHO05D006090 3.9e-24 116.3 130 53.1
Zm00001eb021120 Zea mays HOM05D005102 ORTHO05D006090 1.0e-19 101.7 106 56.6
Zm00001eb156410 Zea mays HOM05D005102 ORTHO05D006090 2.9e-19 100.1 106 55.7
Zm00001eb291560 Zea mays HOM05D005102 ORTHO05D006090 5.5e-18 95.9 106 54.7
Zm00001eb324110 Zea mays HOM05D005102 ORTHO05D006090 7.0e-13 79.0 62 67.7
Cre02.g090650 Chlamydomonas reinhardtii HOM05D005102 ORTHO05D006090 6.5e-11 72.4 180 28.3
Zm00001eb049220 Zea mays HOM05D005102 ORTHO05D006090 1.4e-08 64.7 49 67.3
Zm00001eb318660 Zea mays HOM05D005102 ORTHO05D006090 1.4e-08 64.7 49 67.3
Zm00001eb402860 Zea mays HOM05D005102 ORTHO05D006090 1.4e-08 64.7 49 67.3
Zm00001eb423240 Zea mays HOM05D005102 ORTHO05D006090 1.4e-08 64.7 49 67.3
PRCOL_00001816 Prasinoderma coloniale HOM05D005102 ORTHO05D006090 1.2e-07 61.6 194 29.4
unitig_748.g8292 Utricularia gibba HOM05D005102 ORTHO05D006090 4.4e-07 59.7 60 56.7


User provided reference genes

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