Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.01G174500 Carya illinoinensis HOM05D003628 ORTHO05D004253 0.0e+00 1387.5 798 100.0
QL06p022355 Quercus lobata HOM05D003628 ORTHO05D004253 4.3e-259 898.3 805 66.0
Haze_11526 Corylus avellana HOM05D003628 ORTHO05D004253 9.7e-243 844.0 885 59.1
Cfa014840 Carpinus fangiana HOM05D003628 ORTHO05D004253 9.1e-233 810.8 805 66.7
Dinv27142 Davidia involucrata HOM05D003628 ORTHO05D004253 1.6e-189 667.2 810 54.6
Atru.chr4.1847 Acer truncatum HOM05D003628 ORTHO05D004253 6.8e-188 661.8 815 54.7
RcHm_v2.0_Chr4g0396341 Rosa chinensis HOM05D003628 ORTHO05D004253 9.5e-182 641.3 805 54.8
GSVIVG01029001001 Vitis vinifera HOM05D003628 ORTHO05D004253 2.4e-180 636.7 821 52.4
CANSAT78G2050 Cannabis sativa HOM05D003628 ORTHO05D004253 6.4e-170 602.1 806 50.0
Manes.03G155400 Manihot esculenta HOM05D003628 ORTHO05D004253 7.1e-169 598.6 806 50.9
FAN22G0313 Fragaria x ananassa HOM05D003628 ORTHO05D004253 1.2e-168 597.8 810 48.9
Potri.010G062000 Populus trichocarpa HOM05D003628 ORTHO05D004253 6.2e-165 585.5 804 49.6
Manes.15G048200 Manihot esculenta HOM05D003628 ORTHO05D004253 1.4e-164 584.3 810 49.3
Prupe.1G054700 Prunus persica HOM05D003628 ORTHO05D004253 1.5e-163 580.9 805 54.4
FvH4_4g05311 Fragaria vesca HOM05D003628 ORTHO05D004253 2.0e-163 580.5 808 51.2
Hma1.2p1_1241F.1_g269760 Hydrangea macrophylla HOM05D003628 ORTHO05D004253 1.4e-161 574.3 818 48.4
Ciclev10004333m.g Citrus clementina HOM05D003628 ORTHO05D004253 1.2e-160 571.2 813 53.9
Thecc.04G217100 Theobroma cacao HOM05D003628 ORTHO05D004253 3.5e-160 569.7 797 54.1
TWI73G0229 Tripterygium wilfordii HOM05D003628 ORTHO05D004253 1.6e-157 560.8 805 48.7
CiPaw.02G103800 Carya illinoinensis HOM05D003628 ORTHO05D004253 1.1e-156 558.1 431 79.4
Dinv29776 Davidia involucrata HOM05D003628 ORTHO05D004253 1.1e-156 558.1 664 57.5
FAN07G2212 Fragaria x ananassa HOM05D003628 ORTHO05D004253 1.1e-156 558.1 810 50.2
TAR365G0848 Trochodendron aralioides HOM05D003628 ORTHO05D004253 2.0e-155 553.9 792 53.4
TAR633G2428 Trochodendron aralioides HOM05D003628 ORTHO05D004253 2.2e-154 550.4 826 51.5
TWI09G0941 Tripterygium wilfordii HOM05D003628 ORTHO05D004253 2.9e-154 550.1 806 48.0
Gorai.011G164000 Gossypium raimondii HOM05D003628 ORTHO05D004253 3.8e-154 549.7 798 47.2
MD16G1232700 Malus domestica HOM05D003628 ORTHO05D004253 8.4e-154 548.5 811 51.4
Gohir.D10G146700 Gossypium hirsutum HOM05D003628 ORTHO05D004253 1.4e-153 547.7 798 47.5
Duzib151G0300 Durio zibethinus HOM05D003628 ORTHO05D004253 2.5e-150 537.0 810 50.6
Gorai.006G218800 Gossypium raimondii HOM05D003628 ORTHO05D004253 3.3e-150 536.6 796 50.1
Actinidia39943 Actinidia chinensis HOM05D003628 ORTHO05D004253 9.6e-150 535.0 826 47.0
Duzib212G0614 Durio zibethinus HOM05D003628 ORTHO05D004253 6.9e-148 528.9 810 50.0
Gohir.A02G025400 Gossypium hirsutum HOM05D003628 ORTHO05D004253 5.8e-147 525.8 807 46.0
Glyma.20G079600 Glycine max HOM05D003628 ORTHO05D004253 1.7e-146 524.2 800 45.1
Potri.008G174800 Populus trichocarpa HOM05D003628 ORTHO05D004253 1.7e-146 524.2 801 51.1
Ca_11787_v3 Cicer arietinum L. HOM05D003628 ORTHO05D004253 2.5e-145 520.4 812 45.9
Gohir.A09G201200 Gossypium hirsutum HOM05D003628 ORTHO05D004253 4.2e-145 519.6 796 49.2
Sabra10G0044300 Salix brachista HOM05D006620 ORTHO05D008921 5.5e-145 519.2 763 47.1
Lalb_Chr01g0011261 Lupinus albus HOM05D003628 ORTHO05D004253 7.1e-145 518.8 805 45.5
Gohir.D09G195400 Gossypium hirsutum HOM05D003628 ORTHO05D004253 1.6e-144 517.7 796 48.0
Gorai.005G036000 Gossypium raimondii HOM05D003628 ORTHO05D004253 3.5e-144 516.5 807 45.2
CsaV3_2G012280 Cucumis sativus L. HOM05D003628 ORTHO05D004253 5.1e-143 512.7 826 48.2
FAN12G2520 Fragaria x ananassa HOM05D003628 ORTHO05D004253 6.7e-143 512.3 989 39.5
Rhsim02G0049400 Rhododendron simsii HOM05D003628 ORTHO05D004253 5.7e-142 509.2 822 49.3
Lalb_Chr03g0036821 Lupinus albus HOM05D003628 ORTHO05D004253 1.6e-141 507.7 824 45.5
Lalb_Chr19g0128621 Lupinus albus HOM05D003628 ORTHO05D004253 6.9e-140 502.3 805 47.2
arahy.Tifrunner.gnm1.ann1.STBA65 Arachis hypogaea HOM05D003628 ORTHO05D004253 3.4e-139 500.0 797 45.5
MELO3C023064.2 Cucumis melo HOM05D003628 ORTHO05D004253 5.9e-139 499.2 829 51.0
TAR362G1171 Trochodendron aralioides HOM05D003628 ORTHO05D004253 5.9e-139 499.2 793 46.4
Sed0002438 Sechium edule HOM05D003628 ORTHO05D004253 7.7e-139 498.8 834 49.0
Sabra08G0133300 Salix brachista HOM05D003628 ORTHO05D004253 1.3e-138 498.0 827 44.5
Nn1g03063 Nelumbo nucifera HOM05D003628 ORTHO05D004253 1.7e-138 497.7 819 44.0
CSS0020381 Camellia sinensis var. sinensis HOM05D003628 ORTHO05D004253 2.2e-138 497.3 696 53.0
Phvul.007G238700 Phaseolus vulgaris HOM05D003628 ORTHO05D004253 2.3e-135 487.3 805 50.9
Gohir.D02G032600 Gossypium hirsutum HOM05D003628 ORTHO05D004253 3.9e-135 486.5 807 43.2
CSS0021427 Camellia sinensis var. sinensis HOM05D003628 ORTHO05D004253 5.1e-135 486.1 820 43.5
Lj6g0006649 Lotus japonicus HOM05D003628 ORTHO05D004253 6.7e-135 485.7 766 45.0
Cc03_g07010 Coffea canephora HOM05D003628 ORTHO05D004253 2.2e-133 480.7 808 46.0
PGR142G1422 Punica granatum HOM05D003628 ORTHO05D004253 4.1e-132 476.5 813 45.4
TPR.G23641 Trifolium pratense HOM05D003628 ORTHO05D004253 1.5e-131 474.6 807 42.9
arahy.Tifrunner.gnm1.ann1.7KG1FV Arachis hypogaea HOM05D003628 ORTHO05D004253 1.9e-129 467.6 798 44.4
Sed0008500 Sechium edule HOM05D003628 ORTHO05D004253 3.6e-128 463.4 835 48.0
Eucgr.H00111 Eucalyptus grandis HOM05D003628 ORTHO05D004253 6.1e-128 462.6 816 48.7
Medtr1g046350 Medicago truncatula HOM05D003628 ORTHO05D004253 1.8e-124 451.1 810 42.0
Nitab4.5_0001998g0040 Nicotiana tabacum HOM05D003628 ORTHO05D004253 1.8e-124 451.1 832 43.0
Peaxi162Scf01007g00014 Petunia axillaris HOM05D003628 ORTHO05D004253 1.5e-123 448.0 827 42.8
MSTRG.4198 Avicennia marina HOM05D003628 ORTHO05D004253 5.9e-123 446.0 811 45.1
Psat6g109680 Pisum sativum HOM05D003628 ORTHO05D004253 1.7e-122 444.5 813 42.1
THA.LOC104804570 Tarenaya hassleriana HOM05D003628 ORTHO05D004253 1.7e-122 444.5 815 46.6
Migut.G00600 Erythranthe guttata HOM05D003628 ORTHO05D004253 2.5e-121 440.7 809 44.0
Sc19g0002160 Simmondsia chinensis HOM05D003628 ORTHO05D004253 1.4e-119 434.9 810 43.2
MBI05_g37047_MAGBIO Magnolia biondii HOM05D003628 ORTHO05D004253 3.0e-119 433.7 822 47.0
ClCG06G007410 Citrullus lanatus HOM05D003628 ORTHO05D004253 3.9e-119 433.3 812 47.7
Hma1.2p1_0574F.1_g181510 Hydrangea macrophylla HOM05D003628 ORTHO05D004253 2.6e-118 430.6 469 57.4
Solyc09g091120.3 Solanum lycopersicum HOM05D003628 ORTHO05D004253 2.2e-117 427.6 840 47.6
Nitab4.5_0002738g0080 Nicotiana tabacum HOM05D003628 ORTHO05D004253 4.8e-117 426.4 835 41.9
Nitab4.5_0000451g0120 Nicotiana tabacum HOM05D003628 ORTHO05D004253 3.1e-116 423.7 813 48.0
THA.LOC104821624 Tarenaya hassleriana HOM05D003628 ORTHO05D004253 8.5e-114 415.6 817 41.1
Peaxi162Scf00047g00163 Petunia axillaris HOM05D003628 ORTHO05D004253 5.5e-113 412.9 809 46.7
CAN.G566.2 Capsicum annuum HOM05D003628 ORTHO05D004253 4.7e-112 409.8 815 39.4
CAN.G812.46 Capsicum annuum HOM05D003628 ORTHO05D004253 8.8e-111 405.6 803 46.9
Solyc12g097070.3 Solanum lycopersicum HOM05D003628 ORTHO05D004253 4.4e-110 403.3 819 41.4
Sopen12g032860 Solanum pennellii HOM05D003628 ORTHO05D004253 1.7e-109 401.4 818 41.3
PSO832G4023 Papaver somniferum HOM05D003628 ORTHO05D004253 4.8e-109 399.8 828 41.9
Sopen09g034100 Solanum pennellii HOM05D003628 ORTHO05D004253 1.1e-108 398.7 818 46.1
PSO764G0031 Papaver somniferum HOM05D003628 ORTHO05D004253 2.0e-107 394.4 832 40.7
DCAR_027362 Daucus carota HOM05D003628 ORTHO05D004253 3.5e-107 393.7 801 44.9
vmacro15908 Vaccinium macrocarpon HOM05D003628 ORTHO05D004253 2.2e-106 391.0 812 44.7
ATR0580G379 Amborella trichopoda HOM05D003628 ORTHO05D004253 2.1e-104 384.4 827 40.0
Cpa.g.sc59.57 Carica papaya HOM05D003628 ORTHO05D004253 2.3e-103 380.9 646 45.8
AUR62030025 Chenopodium quinoa HOM05D003628 ORTHO05D004253 2.0e-102 377.9 804 40.0
Sp3g21980 Schrenkiella parvula HOM05D003628 ORTHO05D004253 1.3e-101 375.2 813 43.8
VMungo0720G2372 Vigna mungo HOM05D003628 ORTHO05D004253 8.3e-101 372.5 784 39.3
Carub.0003s2454 Capsella rubella HOM05D003628 ORTHO05D004253 4.1e-100 370.2 812 42.1
EL10Ac3g06305 Beta vulgaris HOM05D003628 ORTHO05D004253 1.2e-99 368.6 804 40.2
Thhalv10002420m.g Eutrema salsugineum HOM05D003628 ORTHO05D004253 1.7e-98 364.8 822 41.6
AT3G23980 Arabidopsis thaliana HOM05D003628 ORTHO05D004253 7.2e-97 359.4 818 42.8
BcaB06g26600 Brassica carinata HOM05D003628 ORTHO05D004253 9.5e-97 359.0 555 50.1
BcaB03g14597 Brassica carinata HOM05D003628 ORTHO05D004253 3.0e-95 354.0 659 44.8
BraA03t13490Z Brassica rapa HOM05D003628 ORTHO05D004253 2.8e-93 347.4 809 43.3
Ah.07g204120 Amaranthus hybridus HOM05D003628 ORTHO05D004253 4.9e-93 346.7 811 39.0
Lj3A630T50 Lonicera japonica HOM05D003628 ORTHO05D004253 4.9e-93 346.7 716 43.9
A03p43510 Brassica napus HOM05D003628 ORTHO05D004253 1.2e-91 342.0 811 42.8
AUR62002607 Chenopodium quinoa HOM05D003628 ORTHO05D004253 1.6e-91 341.7 368 56.5
Aa31LG8G10920 Aethionema arabicum HOM05D003628 ORTHO05D004253 5.0e-90 336.7 782 43.0
BolC7t41696H Brassica oleracea HOM05D003628 ORTHO05D004253 5.0e-90 336.7 677 47.3
SGA_v2.0_scaffold57G20181 Striga asiatica HOM05D003628 ORTHO05D004253 8.6e-90 335.9 806 37.3
C07p12320 Brassica napus HOM05D003628 ORTHO05D004253 1.1e-89 335.5 636 47.5
AL3G39530 Arabidopsis lyrata HOM05D003628 ORTHO05D004253 1.9e-89 334.7 811 41.3
ECA234G0302 Erigeron canadensis HOM05D003628 ORTHO05D004253 2.5e-89 334.3 591 50.1
BcaC06g35665 Brassica carinata HOM05D003628 ORTHO05D004253 3.3e-89 334.0 669 47.1
C07p12290 Brassica napus HOM05D003628 ORTHO05D004253 1.5e-86 325.1 529 49.5
HanXRQChr12g0359881 Helianthus annuus HOM05D003628 ORTHO05D004253 1.5e-86 325.1 394 65.2
HanXRQChr10g0311151 Helianthus annuus HOM05D003628 ORTHO05D004253 9.8e-86 322.4 570 51.8
BcaB04g20394 Brassica carinata HOM05D003628 ORTHO05D004253 2.2e-85 321.2 529 47.6
Lsat_1_v5_gn_5_148361 Lactuca sativa HOM05D003628 ORTHO05D004253 1.1e-84 318.9 503 54.9
CARHR100260 Cardamine hirsuta HOM05D003628 ORTHO05D004253 4.1e-84 317.0 817 39.9
BraA07t28601Z Brassica rapa HOM05D003628 ORTHO05D004253 7.0e-84 316.2 865 34.5
HPP92_014197 Vanilla planifolia HOM05D003628 ORTHO05D004253 9.2e-84 315.8 823 41.1
A07p08160 Brassica napus HOM05D003628 ORTHO05D004253 4.6e-83 313.5 852 38.6
Zm00001eb143670 Zea mays HOM05D003628 ORTHO05D004253 5.0e-82 310.1 811 38.7
Os01g0911800 Oryza sativa ssp. japonica HOM05D003628 ORTHO05D004253 1.2e-80 305.4 536 49.3
CDE07G1740 Ceratophyllum demersum HOM05D003628 ORTHO05D004253 2.1e-80 304.7 823 39.2
BcaC01g03342 Brassica carinata HOM05D003628 ORTHO05D004253 1.2e-78 298.9 606 45.5
Zm00001eb365010 Zea mays HOM05D003628 ORTHO05D004253 7.5e-78 296.2 814 38.3
unitig_748.g7341 Utricularia gibba HOM05D003628 ORTHO05D004253 1.4e-76 292.0 795 36.4
HPP92_026454 Vanilla planifolia HOM05D003628 ORTHO05D004253 1.3e-74 285.4 621 44.9
Glyma.10G128350 Glycine max HOM05D003628 ORTHO05D004253 1.9e-73 281.6 296 58.1
BolC3t17608H Brassica oleracea HOM05D003628 ORTHO05D004253 3.3e-73 280.8 635 41.7
Aqoxy1G00125 Aquilegia oxysepala HOM05D003628 ORTHO05D004253 1.1e-71 275.8 820 39.3
BcaC06g35667 Brassica carinata HOM05D003628 ORTHO05D004253 6.8e-71 273.1 580 44.3
C03p53470 Brassica napus HOM05D003628 ORTHO05D004253 8.9e-71 272.7 631 40.7
Nn3g19840 Nelumbo nucifera HOM05D003628 ORTHO05D004253 3.8e-61 240.7 821 33.3
Hund12227 Selenicereus undatus HOM05D003628 ORTHO05D004253 1.0e-50 206.1 571 37.0
Nitab4.5_0003287g0020 Nicotiana tabacum HOM05D003628 ORTHO05D004253 3.9e-50 204.1 584 36.6
Glyma.10G128300 Glycine max HOM05D003628 ORTHO05D004253 1.4e-47 195.7 457 36.1
Oeu012942.2 Olea europaea HOM05D003628 ORTHO05D004253 1.2e-46 192.6 170 63.5
Lj6A641G44 Lonicera japonica HOM05D003628 ORTHO05D004253 3.4e-46 191.0 673 34.3
CDE04G0520 Ceratophyllum demersum HOM05D003628 ORTHO05D004253 4.2e-44 184.1 325 49.5
Oeu023151.1 Olea europaea HOM05D003628 ORTHO05D004253 1.5e-38 165.6 113 75.2
SEGI_10173 Sequoiadendron giganteum HOM05D003628 ORTHO05D004253 2.6e-38 164.9 388 47.9
AagrBONN_evm.TU.Sc2ySwM_362.1684 Anthoceros agrestis HOM05D003628 ORTHO05D004253 2.7e-35 154.8 405 34.3
Cpa.g.sc59.56 Carica papaya HOM05D003628 ORTHO05D004253 5.7e-33 147.1 129 67.4
MD13G1227500 Malus domestica HOM05D003628 ORTHO05D004253 2.8e-32 144.8 100 79.0
Pp3c20_15710 Physcomitrium patens HOM05D003628 ORTHO05D004253 1.4e-31 142.5 424 30.7
SMO116G0337 Selaginella moellendorffii HOM05D003628 ORTHO05D004253 5.3e-31 140.6 354 38.7
Mapoly0068s0063 Marchantia polymorpha HOM05D003628 ORTHO05D004253 1.2e-30 139.4 539 29.7
Pp3c24_10590 Physcomitrium patens HOM05D003628 ORTHO05D004253 5.8e-30 137.1 421 30.2
Actinidia11385 Actinidia chinensis HOM05D003628 ORTHO05D004253 5.5e-28 130.6 92 75.0
Hma1.2p1_0112F.1_g055040 Hydrangea macrophylla HOM05D003628 ORTHO05D004253 2.7e-27 128.3 177 49.7
CBR_g38414 Chara braunii HOM05D003628 ORTHO05D004253 1.3e-26 125.9 463 30.0
Hma1.2p1_0112F.1_g055050 Hydrangea macrophylla HOM05D003628 ORTHO05D004253 2.8e-24 118.2 189 45.5
Actinidia11386 Actinidia chinensis HOM05D003628 ORTHO05D004253 4.8e-24 117.5 536 27.2
Gohir.D09G057732 Gossypium hirsutum HOM05D003628 ORTHO05D004253 1.9e-20 105.5 68 85.3
Gohir.D04G116566 Gossypium hirsutum HOM05D003628 ORTHO05D004253 1.0e-18 99.8 66 81.8
Pp3c23_8100 Physcomitrium patens HOM05D003628 ORTHO05D004253 1.0e-18 99.8 406 27.8
Hund12233 Selenicereus undatus HOM05D003628 ORTHO05D004253 7.4e-17 93.6 76 65.8
Oeu023150.1 Olea europaea HOM05D003628 ORTHO05D004253 2.2e-16 92.0 55 78.2
PGSC0003DMG402011586 Solanum tuberosum HOM05D003628 ORTHO05D004253 9.1e-15 86.7 62 71.0
Gohir.D08G165950 Gossypium hirsutum HOM05D003628 ORTHO05D004253 5.0e-13 80.9 50 86.0
Gorai.013G043600 Gossypium raimondii HOM05D003628 ORTHO05D004253 1.4e-12 79.3 50 84.0
SHI00869 Sapria himalayana HOM05D003628 ORTHO05D004253 4.7e-11 74.3 76 53.9
AL2G14740 Arabidopsis lyrata HOM05D000013 ORTHO05D000011 4.4e-09 67.8 74 56.8
Gohir.D11G226200 Gossypium hirsutum HOM05D003628 ORTHO05D004253 2.8e-08 65.1 39 84.6
Ah.14g082010 Amaranthus hybridus HOM05D003628 ORTHO05D004253 3.7e-08 64.7 40 80.0
Gohir.D01G060866 Gossypium hirsutum HOM05D003628 ORTHO05D004253 4.8e-08 64.3 39 82.1
Gorai.007G244100 Gossypium raimondii HOM05D003628 ORTHO05D004253 8.2e-08 63.5 39 82.1
Gohir.D03G086101 Gossypium hirsutum HOM05D003628 ORTHO05D004253 1.1e-07 63.2 48 68.8
Gohir.A11G239380 Gossypium hirsutum HOM05D003628 ORTHO05D004253 1.4e-07 62.8 39 79.5
Gorai.003G076100 Gossypium raimondii HOM05D005297 ORTHO05D006545 2.4e-07 62.0 48 68.8
Gorai.007G071000 Gossypium raimondii HOM05D003628 ORTHO05D004253 2.4e-07 62.0 40 77.5
Gorai.009G342200 Gossypium raimondii HOM05D003628 ORTHO05D016264 2.4e-07 62.0 37 83.8
Gohir.D08G175500 Gossypium hirsutum HOM05D003628 ORTHO05D004253 4.1e-07 61.2 39 76.9
Gohir.D06G084232 Gossypium hirsutum HOM05D003628 ORTHO05D016264 7.0e-07 60.5 37 81.1
AagrBONN_evm.TU.Sc2ySwM_344.5018 Anthoceros agrestis HOM05D003628 ORTHO05D004253 9.1e-07 60.1 89 40.4
Gohir.D01G077750 Gossypium hirsutum HOM05D003628 ORTHO05D004253 1.2e-06 59.7 39 76.9
Gohir.D12G066350 Gossypium hirsutum HOM05D003628 ORTHO05D004253 1.2e-06 59.7 47 72.3
Gohir.D04G051401 Gossypium hirsutum HOM05D003628 ORTHO05D004253 1.5e-06 59.3 48 72.9
Gorai.003G055900 Gossypium raimondii HOM05D005297 ORTHO05D006545 2.6e-06 58.5 59 57.6
Gorai.004G113400 Gossypium raimondii HOM05D003628 ORTHO05D004253 2.6e-06 58.5 48 72.9


User provided reference genes

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