Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.01G173600 Carya illinoinensis HOM05D006730 ORTHO05D008189 0.0e+00 1291.9 662 100.0
Cfa015217 Carpinus fangiana HOM05D006730 ORTHO05D008189 3.2e-223 778.9 721 62.7
Haze_01419 Corylus avellana HOM05D006730 ORTHO05D008189 5.1e-197 691.8 566 68.6
QL10p052118 Quercus lobata HOM05D006730 ORTHO05D008189 1.5e-169 600.5 728 51.5
Prupe.8G045700 Prunus persica HOM05D006730 ORTHO05D008189 1.6e-153 547.4 677 48.2
Atru.chr4.1340 Acer truncatum HOM05D006730 ORTHO05D008189 8.9e-141 505.0 651 49.2
MD04G1046800 Malus domestica HOM05D006730 ORTHO05D008189 1.4e-138 497.7 686 45.8
TAR633G0487 Trochodendron aralioides HOM05D006730 ORTHO05D008189 2.8e-134 483.4 662 45.2
TAR633G1963 Trochodendron aralioides HOM05D006730 ORTHO05D008189 2.0e-132 477.2 662 45.3
Ciclev10019155m.g Citrus clementina HOM05D006730 ORTHO05D008189 2.4e-130 470.3 695 44.2
Manes.04G048400 Manihot esculenta HOM05D006730 ORTHO05D008189 7.0e-130 468.8 704 42.3
Cpa.g.sc9.329 Carica papaya HOM05D006730 ORTHO05D008189 7.1e-122 442.2 712 41.2
CANSAT56G2182 Cannabis sativa HOM05D006730 ORTHO05D008189 1.2e-118 431.4 669 41.1
Actinidia27097 Actinidia chinensis HOM05D006730 ORTHO05D008189 3.2e-114 416.8 735 39.6
MELO3C015702.2 Cucumis melo HOM05D006730 ORTHO05D008189 2.7e-113 413.7 698 40.7
FvH4_1g27220 Fragaria vesca HOM05D006730 ORTHO05D008189 2.7e-113 413.7 681 41.4
FAN26G1825 Fragaria x ananassa HOM05D006730 ORTHO05D008189 2.3e-112 410.6 692 40.2
Nn1g09713 Nelumbo nucifera HOM05D006730 ORTHO05D008189 1.9e-111 407.5 672 39.9
Eucgr.A00038 Eucalyptus grandis HOM05D006730 ORTHO05D008189 1.8e-109 401.0 525 47.2
CsaV3_7G002050 Cucumis sativus L. HOM05D006730 ORTHO05D008189 2.4e-109 400.6 695 39.7
Glyma.12G050000 Glycine max HOM05D006730 ORTHO05D008189 4.0e-109 399.8 702 39.5
VMungo0720G0522 Vigna mungo HOM05D006730 ORTHO05D008189 5.2e-109 399.4 521 45.9
COL.COLO4_28380 Corchorus olitorius HOM05D006730 ORTHO05D008189 2.6e-108 397.1 574 44.6
Sed0020880 Sechium edule HOM05D006730 ORTHO05D008189 2.6e-108 397.1 659 40.5
FAN19G2476 Fragaria x ananassa HOM05D006730 ORTHO05D008189 4.4e-108 396.4 705 38.9
Ca_03751_v3 Cicer arietinum L. HOM05D006730 ORTHO05D008189 2.9e-107 393.7 707 40.3
Phvul.011G201600 Phaseolus vulgaris HOM05D006730 ORTHO05D008189 2.9e-107 393.7 508 46.1
Thecc.04G171700 Theobroma cacao HOM05D006730 ORTHO05D008189 1.9e-106 391.0 678 41.4
Duzib151G0982 Durio zibethinus HOM05D006730 ORTHO05D008189 9.3e-106 388.7 673 40.7
Potri.017G018300 Populus trichocarpa HOM05D006730 ORTHO05D008189 9.3e-106 388.7 678 39.8
ClCG09G018880 Citrullus lanatus HOM05D006730 ORTHO05D008189 3.0e-104 383.6 411 50.1
RcHm_v2.0_Chr3g0487611 Rosa chinensis HOM05D006730 ORTHO05D008189 3.3e-103 380.2 689 40.2
VMungo0647G1321 Vigna mungo HOM05D006730 ORTHO05D008189 8.1e-102 375.6 521 44.5
TAR633G2319 Trochodendron aralioides HOM05D006730 ORTHO05D008189 1.1e-101 375.2 421 51.5
Lj3g0015132 Lotus japonicus HOM05D006730 ORTHO05D008189 1.5e-100 371.3 516 44.6
Medtr4g068005 Medicago truncatula HOM05D006730 ORTHO05D008189 4.4e-100 369.8 675 38.5
Sc19g0000330 Simmondsia chinensis HOM05D006730 ORTHO05D008189 3.8e-99 366.7 642 39.3
Sabra17G0012500 Salix brachista HOM05D006730 ORTHO05D008189 1.1e-98 365.2 659 38.2
arahy.Tifrunner.gnm1.ann1.S6BLSS Arachis hypogaea HOM05D006730 ORTHO05D008189 1.9e-98 364.4 669 37.5
Gohir.D02G011000 Gossypium hirsutum HOM05D006730 ORTHO05D008189 1.9e-98 364.4 522 44.3
TPR.G34183 Trifolium pratense HOM05D006730 ORTHO05D008189 5.4e-98 362.8 710 38.5
Gorai.005G013400 Gossypium raimondii HOM05D006730 ORTHO05D008189 1.2e-97 361.7 522 44.1
Ca_07546_v3 Cicer arietinum L. HOM05D006730 ORTHO05D008189 2.1e-97 360.9 663 40.3
TWI15G0430 Tripterygium wilfordii HOM05D006730 ORTHO05D008189 2.1e-97 360.9 646 39.5
Lalb_Chr03g0025971 Lupinus albus HOM05D006730 ORTHO05D008189 2.7e-97 360.5 702 39.5
Lalb_Chr03g0026031 Lupinus albus HOM05D006730 ORTHO05D008189 2.7e-97 360.5 702 39.5
PGR102G2296 Punica granatum HOM05D006730 ORTHO05D008189 2.7e-97 360.5 697 36.9
Aa31LG1G25250 Aethionema arabicum HOM05D006730 ORTHO05D008189 5.6e-95 352.8 695 36.5
Sabra06G0076300 Salix brachista HOM05D006730 ORTHO05D008189 5.6e-95 352.8 637 38.3
GSVIVG01038091001 Vitis vinifera HOM05D006730 ORTHO05D008189 5.6e-95 352.8 383 52.7
AL7G49300 Arabidopsis lyrata HOM05D006730 ORTHO05D008189 2.1e-94 350.9 710 36.6
Psat7g208760 Pisum sativum HOM05D006730 ORTHO05D008189 8.1e-94 349.0 694 38.6
vmacro21172 Vaccinium macrocarpon HOM05D006730 ORTHO05D008189 5.3e-93 346.3 621 38.8
Carub.0007s3500 Capsella rubella HOM05D006730 ORTHO05D008189 3.4e-92 343.6 476 44.5
arahy.Tifrunner.gnm1.ann1.PF62HI Arachis hypogaea HOM05D006730 ORTHO05D008189 4.9e-91 339.7 511 41.7
Gohir.A02G010500 Gossypium hirsutum HOM05D006730 ORTHO05D008189 4.9e-91 339.7 420 48.6
THA.LOC104805724 Tarenaya hassleriana HOM05D006730 ORTHO05D008189 4.9e-91 339.7 552 40.6
vmacro00655 Vaccinium macrocarpon HOM05D006730 ORTHO05D008189 1.4e-90 338.2 642 37.5
Lj3A110T20 Lonicera japonica HOM05D006730 ORTHO05D008189 5.1e-88 329.7 618 38.8
AT5G40520 Arabidopsis thaliana HOM05D006730 ORTHO05D008189 2.5e-87 327.4 716 36.6
CARHR138600 Cardamine hirsuta HOM05D006730 ORTHO05D008189 8.1e-86 322.4 369 49.9
Dinv05091 Davidia involucrata HOM05D006730 ORTHO05D008189 4.0e-85 320.1 550 40.9
Oeu002416.1 Olea europaea HOM05D006730 ORTHO05D008189 2.0e-84 317.8 735 35.1
A05p16170 Brassica napus HOM05D006730 ORTHO05D008189 7.1e-82 309.3 447 42.3
BraA05t20528Z Brassica rapa HOM05D006730 ORTHO05D008189 7.1e-82 309.3 447 42.3
BcaC08g44345 Brassica carinata HOM05D006730 ORTHO05D008189 4.6e-81 306.6 442 42.8
C06p17830 Brassica napus HOM05D006730 ORTHO05D008189 6.0e-81 306.2 442 42.8
Lsat_1_v5_gn_5_69460 Lactuca sativa HOM05D006730 ORTHO05D008189 7.9e-81 305.8 531 38.2
BolC6t36977H Brassica oleracea HOM05D006730 ORTHO05D008189 3.9e-80 303.5 452 41.8
CSS0011413 Camellia sinensis var. sinensis HOM05D006730 ORTHO05D008189 5.7e-79 299.7 285 57.9
Hma1.2p1_3037F.1_g331960 Hydrangea macrophylla HOM05D006730 ORTHO05D008189 7.4e-79 299.3 427 46.4
Hma1.2p1_0324F.1_g125720 Hydrangea macrophylla HOM05D006730 ORTHO05D008189 9.6e-79 298.9 427 46.4
AUR62005936 Chenopodium quinoa HOM05D006730 ORTHO05D008189 1.6e-78 298.1 676 34.0
Sp7g05120 Schrenkiella parvula HOM05D006730 ORTHO05D008189 1.4e-77 295.0 453 42.4
BcaB02g08030 Brassica carinata HOM05D006730 ORTHO05D008189 2.0e-76 291.2 457 40.9
AUR62028127 Chenopodium quinoa HOM05D006730 ORTHO05D008189 3.4e-76 290.4 677 34.1
MSTRG.27276 Avicennia marina HOM05D006730 ORTHO05D008189 6.5e-75 286.2 507 40.0
Sopen06g029510 Solanum pennellii HOM05D006730 ORTHO05D008189 3.9e-72 276.9 658 34.7
Solyc06g073160.4 Solanum lycopersicum HOM05D006730 ORTHO05D008189 5.1e-72 276.6 658 34.5
MBI11_g10487_MAGBIO Magnolia biondii HOM05D006730 ORTHO05D008189 2.5e-71 274.2 592 36.5
Hund25530 Selenicereus undatus HOM05D006730 ORTHO05D008189 5.7e-71 273.1 441 39.0
Thhalv10027675m.g Eutrema salsugineum HOM05D006730 ORTHO05D008189 1.6e-70 271.6 450 42.4
Nitab4.5_0001210g0010 Nicotiana tabacum HOM05D006730 ORTHO05D008189 1.8e-69 268.1 646 34.4
Nitab4.5_0001586g0210 Nicotiana tabacum HOM05D006730 ORTHO05D008189 1.8e-69 268.1 581 35.6
PGSC0003DMG400026917 Solanum tuberosum HOM05D006730 ORTHO05D008189 4.1e-69 266.9 657 34.6
Nitab4.5_0002782g0010 Nicotiana tabacum HOM05D006730 ORTHO05D008189 6.9e-69 266.2 650 34.8
ECA233G5772 Erigeron canadensis HOM05D005219 ORTHO05D006451 3.4e-68 263.8 552 35.5
EL10Ac9g22987 Beta vulgaris HOM05D006730 ORTHO05D008189 5.9e-68 263.1 716 31.7
FAN28G2072 Fragaria x ananassa HOM05D006730 ORTHO05D008189 7.7e-68 262.7 343 46.1
Peaxi162Scf00180g00519 Petunia axillaris HOM05D006730 ORTHO05D008189 3.2e-66 257.3 579 36.6
SGA_v2.0_scaffold94G28623 Striga asiatica HOM05D006730 ORTHO05D008189 5.5e-66 256.5 446 38.3
SGA_v2.0_scaffold60G20910 Striga asiatica HOM05D005928 ORTHO05D007500 7.2e-66 256.1 518 37.3
HanXRQChr17g0565921 Helianthus annuus HOM05D006730 ORTHO05D008189 2.3e-64 251.1 432 38.9
Cc03_g12540 Coffea canephora HOM05D006730 ORTHO05D008189 6.3e-62 243.0 586 33.3
CSS0007333 Camellia sinensis var. sinensis HOM05D006730 ORTHO05D008189 4.1e-61 240.4 285 47.7
SHI01154 Sapria himalayana HOM05D006730 ORTHO05D008189 5.3e-61 240.0 450 36.9
Oeu029987.1 Olea europaea HOM05D006730 ORTHO05D008189 1.1e-55 222.2 365 41.4
ATR0743G243 Amborella trichopoda HOM05D006730 ORTHO05D008189 2.0e-52 211.5 445 33.9
SGA_v2.0_scaffold36G14479 Striga asiatica HOM05D000061 ORTHO05D008189 3.6e-49 200.7 442 33.9
DCAR_027052 Daucus carota HOM05D006730 ORTHO05D008189 1.8e-48 198.4 420 34.8
FAN23G1889 Fragaria x ananassa HOM05D006730 ORTHO05D008189 2.9e-43 181.0 351 39.6
CDE07G0581 Ceratophyllum demersum HOM05D006730 ORTHO05D008189 5.7e-39 166.8 447 30.0
PSO017G5839 Papaver somniferum HOM05D006730 ORTHO05D008189 6.3e-30 136.7 415 28.4
Os09g0103200 Oryza sativa ssp. japonica HOM05D006730 ORTHO05D008189 5.4e-29 133.7 426 27.5
unitig_26.g9736 Utricularia gibba HOM05D006730 ORTHO05D006349 4.3e-26 124.0 459 26.6
Zm00001eb184290 Zea mays HOM05D006730 ORTHO05D008189 3.6e-25 120.9 427 27.9
Ah.10g027080 Amaranthus hybridus HOM05D006730 ORTHO05D008189 2.3e-24 118.2 217 41.5
FAN28G2984 Fragaria x ananassa HOM05D006730 ORTHO05D008189 1.4e-21 109.0 327 33.6
HPP92_022486 Vanilla planifolia HOM05D001064 ORTHO05D000885 7.8e-20 103.2 304 28.0
PSO063G4508 Papaver somniferum HOM05D006730 ORTHO05D008189 3.6e-17 94.4 337 26.7
Ah.10g027090 Amaranthus hybridus HOM05D006730 ORTHO05D008189 1.3e-11 75.9 144 37.5
HanXRQChr12g0385981 Helianthus annuus HOM05D006730 ORTHO05D008189 1.9e-10 72.0 88 47.7
Dinv05092 Davidia involucrata HOM05D006730 ORTHO05D008189 1.8e-08 65.5 50 62.0
TAR633G2818 Trochodendron aralioides HOM05D006730 ORTHO05D008189 2.9e-06 58.2 49 61.2


User provided reference genes

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