Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.01G171300 Carya illinoinensis HOM05D003796 ORTHO05D004486 5.0e-123 444.5 231 100.0
QL10p054554 Quercus lobata HOM05D003796 ORTHO05D004486 4.3e-74 282.0 239 67.4
Prupe.1G586900 Prunus persica HOM05D003796 ORTHO05D004486 6.0e-68 261.5 221 65.6
Sed0014142 Sechium edule HOM05D003796 ORTHO05D004486 6.6e-67 258.1 232 62.9
Cpa.g.sc9.357 Carica papaya HOM05D003796 ORTHO05D004486 1.5e-66 256.9 227 59.9
MELO3C022427.2 Cucumis melo HOM05D003796 ORTHO05D004486 3.3e-66 255.8 229 60.7
TAR362G0252 Trochodendron aralioides HOM05D003796 ORTHO05D004486 7.3e-66 254.6 230 61.7
Dinv33197 Davidia involucrata HOM05D003796 ORTHO05D004486 4.7e-65 251.9 230 62.6
CsaV3_6G007010 Cucumis sativus L. HOM05D003796 ORTHO05D004486 6.2e-65 251.5 225 60.0
Hma1.2p1_0150F.1_g066730 Hydrangea macrophylla HOM05D003796 ORTHO05D004486 2.4e-61 239.6 202 59.9
Ciclev10021832m.g Citrus clementina HOM05D003796 ORTHO05D004486 2.1e-60 236.5 230 55.7
MD08G1249800 Malus domestica HOM05D003796 ORTHO05D004486 1.0e-59 234.2 236 56.4
Manes.11G130100 Manihot esculenta HOM05D003796 ORTHO05D004486 2.3e-59 233.0 203 62.6
PGR042G0542 Punica granatum HOM05D003796 ORTHO05D004486 2.3e-59 233.0 175 67.4
Actinidia28983 Actinidia chinensis HOM05D003796 ORTHO05D004486 3.0e-59 232.6 226 59.3
GSVIVG01038135001 Vitis vinifera HOM05D003796 ORTHO05D004486 1.1e-58 230.7 203 59.6
RcHm_v2.0_Chr4g0406061 Rosa chinensis HOM05D003796 ORTHO05D004486 4.3e-58 228.8 229 59.8
Nn7g37675 Nelumbo nucifera HOM05D003796 ORTHO05D004486 6.2e-57 224.9 201 61.2
Glyma.12G048900 Glycine max HOM05D003796 ORTHO05D004486 1.1e-56 224.2 166 68.7
MSTRG.22023 Avicennia marina HOM05D003796 ORTHO05D004486 1.8e-56 223.4 204 58.8
Lj3g0002298 Lotus japonicus HOM05D003796 ORTHO05D004486 2.3e-56 223.0 163 69.3
Potri.013G125600 Populus trichocarpa HOM05D003796 ORTHO05D004486 1.5e-55 220.3 225 56.9
Atru.chr4.1395 Acer truncatum HOM05D003796 ORTHO05D004486 5.8e-55 218.4 189 61.4
CANSAT35G0237 Cannabis sativa HOM05D003796 ORTHO05D004486 9.9e-55 217.6 230 55.2
Duzib268G1213 Durio zibethinus HOM05D003796 ORTHO05D004486 1.7e-54 216.9 174 63.2
Lalb_Chr19g0138481 Lupinus albus HOM05D003796 ORTHO05D004486 2.2e-54 216.5 213 55.9
HanXRQChr13g0418501 Helianthus annuus HOM05D003796 ORTHO05D004486 2.9e-54 216.1 219 54.3
Gohir.A05G327600 Gossypium hirsutum HOM05D003796 ORTHO05D004486 3.7e-54 215.7 174 62.1
TWI63G0811 Tripterygium wilfordii HOM05D003796 ORTHO05D004486 3.7e-54 215.7 191 59.2
Migut.N03072 Erythranthe guttata HOM05D003796 ORTHO05D004486 1.9e-53 213.4 179 64.2
ECA240G0037 Erigeron canadensis HOM05D003796 ORTHO05D004486 2.4e-53 213.0 225 54.7
Gohir.D05G328000 Gossypium hirsutum HOM05D003796 ORTHO05D004486 2.4e-53 213.0 177 62.1
Gorai.009G351700 Gossypium raimondii HOM05D003796 ORTHO05D004486 1.6e-52 210.3 178 62.4
VMungo1127G1870 Vigna mungo HOM05D003796 ORTHO05D004486 1.3e-51 207.2 157 65.6
Phvul.011G051000 Phaseolus vulgaris HOM05D003796 ORTHO05D004486 2.3e-51 206.5 157 65.6
CDE04G0900 Ceratophyllum demersum HOM05D003796 ORTHO05D004486 6.6e-51 204.9 155 69.0
PGSC0003DMG401007138 Solanum tuberosum HOM05D003796 ORTHO05D004486 6.6e-51 204.9 174 62.1
Medtr4g068280 Medicago truncatula HOM05D003796 ORTHO05D004486 2.5e-50 203.0 161 64.6
Solyc06g074890.1 Solanum lycopersicum HOM05D003796 ORTHO05D004486 3.3e-50 202.6 174 61.5
Sopen06g031300 Solanum pennellii HOM05D003796 ORTHO05D004486 4.3e-50 202.2 174 61.5
CAN.G1432.20 Capsicum annuum HOM05D003796 ORTHO05D004486 5.6e-50 201.8 160 64.4
MBI08_g25562_MAGBIO Magnolia biondii HOM05D003796 ORTHO05D004486 3.6e-49 199.1 169 62.7
arahy.Tifrunner.gnm1.ann1.P7R60W Arachis hypogaea HOM05D003796 ORTHO05D004486 6.2e-49 198.4 200 57.0
Lsat_1_v5_gn_3_110880 Lactuca sativa HOM05D003796 ORTHO05D004486 1.8e-48 196.8 231 51.9
EL10Ac3g06067 Beta vulgaris HOM05D003796 ORTHO05D004486 8.9e-48 194.5 199 52.3
Ca_20812_v3 Cicer arietinum L. HOM05D003796 ORTHO05D004486 1.7e-46 190.3 162 63.6
PGSC0003DMG402007138 Solanum tuberosum HOM05D003796 ORTHO05D004486 3.8e-46 189.1 160 61.9
Sopen06g031310 Solanum pennellii HOM05D003796 ORTHO05D004486 6.4e-46 188.3 160 61.9
Solyc06g074900.3 Solanum lycopersicum HOM05D003796 ORTHO05D004486 1.4e-45 187.2 160 61.9
arahy.Tifrunner.gnm1.ann1.I4880T Arachis hypogaea HOM05D003796 ORTHO05D004486 4.2e-45 185.7 216 52.3
TPR.G10226 Trifolium pratense HOM05D003796 ORTHO05D004486 5.4e-45 185.3 159 59.7
ATR0075G004 Amborella trichopoda HOM05D003796 ORTHO05D004486 3.9e-43 179.1 163 58.3
SGA_v2.0_scaffold25G10998 Striga asiatica HOM05D003796 ORTHO05D004486 1.5e-42 177.2 214 48.1
Sc19g0002760 Simmondsia chinensis HOM05D003796 ORTHO05D004486 1.2e-41 174.1 127 66.9
Aqoxy2G01069 Aquilegia oxysepala HOM05D003796 ORTHO05D004486 2.1e-41 173.3 167 55.7
PSO832G1541 Papaver somniferum HOM05D003796 ORTHO05D004486 2.8e-41 172.9 226 46.0
PSO210G4043 Papaver somniferum HOM05D003796 ORTHO05D004486 8.1e-41 171.4 154 56.5
FAN12G1593 Fragaria x ananassa HOM05D003796 ORTHO05D004486 1.1e-40 171.0 227 50.2
Nitab4.5_0007977g0020 Nicotiana tabacum HOM05D003796 ORTHO05D004486 1.4e-40 170.6 160 59.4
Peaxi162Scf00568g00527 Petunia axillaris HOM05D003796 ORTHO05D004486 1.2e-39 167.5 164 57.9
CAN.G1001.53 Capsicum annuum HOM05D003796 ORTHO05D004486 1.3e-38 164.1 160 55.0
QL10p054570 Quercus lobata HOM05D003796 ORTHO05D004486 2.9e-38 162.9 130 66.9
Cc06_g21590 Coffea canephora HOM05D003796 ORTHO05D004486 1.1e-37 161.0 152 58.6
Os01g0894700 Oryza sativa ssp. japonica HOM05D003796 ORTHO05D004486 1.1e-37 161.0 157 51.6
Zm00001eb144880 Zea mays HOM05D003796 ORTHO05D004486 1.1e-37 161.0 226 42.9
Psat7g207840 Pisum sativum HOM05D003796 ORTHO05D004486 4.2e-37 159.1 115 65.2
QL93p1902_0792 Quercus lobata HOM05D003796 ORTHO05D004486 9.3e-37 157.9 123 68.3
FvH4_4g10500 Fragaria vesca HOM05D003796 ORTHO05D004486 1.2e-36 157.5 182 53.8
AagrBONN_evm.TU.Sc2ySwM_117.3751 Anthoceros agrestis HOM05D003796 ORTHO05D004486 7.8e-36 154.8 174 50.6
ClCG06G001080 Citrullus lanatus HOM05D003796 ORTHO05D004486 1.5e-34 150.6 224 44.6
CAN.G1001.52 Capsicum annuum HOM05D003796 ORTHO05D004486 3.6e-33 146.0 97 74.2
SEGI_15351 Sequoiadendron giganteum HOM05D003796 ORTHO05D004486 6.2e-33 145.2 155 47.1
Ah.13g073570 Amaranthus hybridus HOM05D003796 ORTHO05D004486 9.0e-32 141.4 165 47.9
AUR62002376 Chenopodium quinoa HOM05D003796 ORTHO05D004486 5.8e-31 138.7 137 51.8
Pp3c14_20300 Physcomitrium patens HOM05D003796 ORTHO05D004486 1.1e-29 134.4 242 38.0
AUR62023807 Chenopodium quinoa HOM05D003796 ORTHO05D004486 1.4e-29 134.0 112 58.9
Hund03191 Selenicereus undatus HOM05D003796 ORTHO05D004486 4.2e-29 132.5 192 41.1
CBR_g31497 Chara braunii HOM05D003796 ORTHO05D004486 7.1e-29 131.7 135 46.7
Eucgr.A00010 Eucalyptus grandis HOM05D003796 ORTHO05D004486 1.2e-28 131.0 83 77.1
Haze_01371 Corylus avellana HOM05D003796 ORTHO05D004486 1.1e-26 124.4 115 61.7
Nn1g09689 Nelumbo nucifera HOM05D003796 ORTHO05D004486 3.3e-26 122.9 185 36.2
ClCG06G001070 Citrullus lanatus HOM05D003796 ORTHO05D004486 1.6e-25 120.6 270 32.6
Oeu021569.1 Olea europaea HOM05D003796 ORTHO05D004486 4.0e-24 115.9 139 47.5
RcHm_v2.0_Chr5g0044351 Rosa chinensis HOM05D003796 ORTHO05D004486 9.0e-24 114.8 226 34.1
VMungo1080G1154 Vigna mungo HOM05D003796 ORTHO05D004486 3.4e-23 112.8 147 38.8
HPP92_001250 Vanilla planifolia HOM05D003796 ORTHO05D004486 4.5e-23 112.5 159 37.1
HPP92_001266 Vanilla planifolia HOM05D003796 ORTHO05D004486 4.5e-23 112.5 159 37.1
FAN22G2021 Fragaria x ananassa HOM05D003796 ORTHO05D004486 5.8e-23 112.1 154 47.4
FAN07G1083 Fragaria x ananassa HOM05D003796 ORTHO05D004486 9.9e-23 111.3 137 48.9
Medtr3g009150 Medicago truncatula HOM05D003796 ORTHO05D004486 9.9e-23 111.3 123 40.7
PSO210G6849 Papaver somniferum HOM05D003796 ORTHO05D004486 9.9e-23 111.3 121 40.5
TAR362G0647 Trochodendron aralioides HOM05D003796 ORTHO05D004486 9.9e-23 111.3 120 43.3
arahy.Tifrunner.gnm1.ann1.T3U7B8 Arachis hypogaea HOM05D003796 ORTHO05D004486 1.3e-22 110.9 145 39.3
Dinv01938 Davidia involucrata HOM05D003796 ORTHO05D004486 1.3e-22 110.9 154 39.6
Aqoxy5G00021 Aquilegia oxysepala HOM05D003796 ORTHO05D004486 1.7e-22 110.5 159 35.2
AT2G30695 Arabidopsis thaliana HOM05D003796 ORTHO05D004486 1.7e-22 110.5 153 36.6
Cpa.g.sc9.356 Carica papaya HOM05D003796 ORTHO05D004486 1.7e-22 110.5 158 34.8
Carub.0004s1187 Capsella rubella HOM05D003796 ORTHO05D004486 2.2e-22 110.2 151 36.4
Hma1.2p1_0150F.1_g066720 Hydrangea macrophylla HOM05D003796 ORTHO05D004486 2.2e-22 110.2 197 34.5
Sp4g13210 Schrenkiella parvula HOM05D003796 ORTHO05D004486 2.9e-22 109.8 157 35.0
Actinidia28984 Actinidia chinensis HOM05D003796 ORTHO05D004486 3.8e-22 109.4 127 42.5
MSTRG.24566 Avicennia marina HOM05D003796 ORTHO05D004486 3.8e-22 109.4 161 34.2
Nitab4.5_0000856g0240 Nicotiana tabacum HOM05D003796 ORTHO05D004486 3.8e-22 109.4 101 61.4
Manes.11G130200 Manihot esculenta HOM05D003796 ORTHO05D004486 6.4e-22 108.6 153 34.0
Potri.013G125500 Populus trichocarpa HOM05D003796 ORTHO05D004486 6.4e-22 108.6 153 33.3
BraA04t17867Z Brassica rapa HOM05D003796 ORTHO05D004486 8.4e-22 108.2 153 35.3
CSS0047221 Camellia sinensis var. sinensis HOM05D003796 ORTHO05D004486 8.4e-22 108.2 123 40.7
Glyma.04G117800 Glycine max HOM05D003796 ORTHO05D004486 1.4e-21 107.5 124 39.5
Prupe.1G206000 Prunus persica HOM05D003796 ORTHO05D004486 1.4e-21 107.5 150 36.7
Atru.chr4.1394 Acer truncatum HOM05D003796 ORTHO05D004486 2.5e-21 106.7 167 34.1
AL4G25590 Arabidopsis lyrata HOM05D003796 ORTHO05D004486 2.5e-21 106.7 153 35.3
CDE09G0312 Ceratophyllum demersum HOM05D003796 ORTHO05D004486 2.5e-21 106.7 151 41.1
Lj3g0024133 Lotus japonicus HOM05D005948 ORTHO05D007689 2.5e-21 106.7 162 35.2
ATR0075G045 Amborella trichopoda HOM05D003796 ORTHO05D004486 3.2e-21 106.3 212 33.0
DCAR_005444 Daucus carota HOM05D003796 ORTHO05D004486 3.2e-21 106.3 129 38.8
Dinv02937 Davidia involucrata HOM05D003796 ORTHO05D004486 3.2e-21 106.3 142 40.8
CANSAT80G1979 Cannabis sativa HOM05D003796 ORTHO05D004486 5.5e-21 105.5 206 31.6
CsaV3_6G007000 Cucumis sativus L. HOM05D003796 ORTHO05D004486 5.5e-21 105.5 158 36.1
Lalb_Chr18g0048811 Lupinus albus HOM05D003796 ORTHO05D004486 7.1e-21 105.1 143 35.0
Sabra13G0104300 Salix brachista HOM05D003796 ORTHO05D004486 7.1e-21 105.1 153 32.0
Gohir.A02G091201 Gossypium hirsutum HOM05D003796 ORTHO05D004486 9.3e-21 104.8 144 34.0
Gohir.A02G091300 Gossypium hirsutum HOM05D003796 ORTHO05D004486 9.3e-21 104.8 144 34.0
GSVIVG01038134001 Vitis vinifera HOM05D003796 ORTHO05D004486 9.3e-21 104.8 182 33.0
arahy.Tifrunner.gnm1.ann1.43ZKU2 Arachis hypogaea HOM05D003796 ORTHO05D004486 1.2e-20 104.4 168 35.1
CARHR124190 Cardamine hirsuta HOM05D003796 ORTHO05D004486 1.2e-20 104.4 151 35.8
Thhalv10017862m.g Eutrema salsugineum HOM05D003796 ORTHO05D004486 1.2e-20 104.4 155 35.5
BolC4t27478H Brassica oleracea HOM05D003796 ORTHO05D004486 1.6e-20 104.0 154 36.4
Duzib268G0739 Durio zibethinus HOM05D003796 ORTHO05D004486 1.6e-20 104.0 144 34.0
PGR042G1269 Punica granatum HOM05D003796 ORTHO05D004486 1.6e-20 104.0 121 40.5
C04p59700 Brassica napus HOM05D003796 ORTHO05D004486 2.1e-20 103.6 154 35.7
CiPaw.02G100800 Carya illinoinensis HOM05D003796 ORTHO05D004486 2.7e-20 103.2 158 34.2
Eucgr.A00012 Eucalyptus grandis HOM05D003796 ORTHO05D004486 2.7e-20 103.2 152 36.2
CANSAT80G2480 Cannabis sativa HOM05D003796 ORTHO05D004486 3.5e-20 102.8 175 34.3
Cc06_g21580 Coffea canephora HOM05D003796 ORTHO05D004486 3.5e-20 102.8 157 35.0
MBI08_g25561_MAGBIO Magnolia biondii HOM05D003796 ORTHO05D004486 4.6e-20 102.4 156 37.8
arahy.Tifrunner.gnm1.ann1.PV0LGU Arachis hypogaea HOM05D003796 ORTHO05D004486 6.0e-20 102.1 136 36.8
FAN12G2909 Fragaria x ananassa HOM05D003796 ORTHO05D004486 6.0e-20 102.1 154 46.1
Thecc.04G167900 Theobroma cacao HOM05D003796 ORTHO05D004486 6.0e-20 102.1 121 37.2
Sabra13G0104400 Salix brachista HOM05D003796 ORTHO05D004486 7.9e-20 101.7 147 46.9
Ciclev10022254m.g Citrus clementina HOM05D003796 ORTHO05D004486 1.0e-19 101.3 124 35.5
MELO3C022428.2 Cucumis melo HOM05D003796 ORTHO05D004486 1.0e-19 101.3 195 31.8
QL10p054574 Quercus lobata HOM05D003796 ORTHO05D004486 1.3e-19 100.9 70 72.9
QL93p1902_0789 Quercus lobata HOM05D003796 ORTHO05D004486 1.3e-19 100.9 70 72.9
TWI63G1493 Tripterygium wilfordii HOM05D003796 ORTHO05D004486 1.3e-19 100.9 160 36.9
MD04G1048700 Malus domestica HOM05D003796 ORTHO05D004486 1.8e-19 100.5 164 32.9
Os09g0515400 Oryza sativa ssp. japonica HOM05D003796 ORTHO05D004486 3.9e-19 99.4 135 36.3
Cfa015262 Carpinus fangiana HOM05D003796 ORTHO05D004486 5.1e-19 99.0 121 38.8
PSO832G2763 Papaver somniferum HOM05D003796 ORTHO05D004486 6.7e-19 98.6 106 41.5
Rhsim02G0083600 Rhododendron simsii HOM05D003796 ORTHO05D004486 1.1e-18 97.8 155 34.2
Zm00001eb102770 Zea mays HOM05D003796 ORTHO05D004486 3.3e-18 96.3 113 42.5
TPR.G16683 Trifolium pratense HOM05D003796 ORTHO05D004486 4.3e-18 95.9 170 32.9
A04p23400 Brassica napus HOM05D003796 ORTHO05D004486 9.6e-18 94.7 163 31.9
THA.LOC104800810 Tarenaya hassleriana HOM05D003796 ORTHO05D004486 6.2e-17 92.0 158 33.5
Zm00001eb318420 Zea mays HOM05D003796 ORTHO05D004486 6.2e-17 92.0 132 35.6
Peaxi162Scf00568g00059 Petunia axillaris HOM05D003796 ORTHO05D011410 1.1e-16 91.3 176 30.7
FAN25G0936 Fragaria x ananassa HOM05D003796 ORTHO05D004486 1.4e-16 90.9 194 32.0
Oeu020812.1 Olea europaea HOM05D003796 ORTHO05D004486 2.4e-16 90.1 91 48.4
Nitab4.5_0000504g0010 Nicotiana tabacum HOM05D003796 ORTHO05D004486 9.0e-16 88.2 149 32.9
Gorai.005G124300 Gossypium raimondii HOM05D003796 ORTHO05D004486 1.2e-15 87.8 123 34.1
Aa31LG5G6120 Aethionema arabicum HOM05D004685 ORTHO05D005412 2.0e-15 87.0 150 30.7
FAN11G2235 Fragaria x ananassa HOM05D003796 ORTHO05D004486 5.8e-15 85.5 264 27.3
QL10p054541 Quercus lobata HOM05D003796 ORTHO05D004486 5.8e-15 85.5 185 29.2
FAN21G0866 Fragaria x ananassa HOM05D003796 ORTHO05D004486 9.3e-13 78.2 222 29.3
QL10p053319 Quercus lobata HOM05D003796 ORTHO05D004486 9.3e-13 78.2 230 25.2
Phvul.005G006800 Phaseolus vulgaris HOM05D003796 ORTHO05D004486 2.8e-09 66.6 74 41.9
Haze_01372 Corylus avellana HOM05D003796 ORTHO05D004486 3.7e-09 66.2 83 39.8
CSS0030237 Camellia sinensis var. sinensis HOM05D003796 ORTHO05D004486 1.1e-08 64.7 73 39.7


User provided reference genes

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