Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.01G156600 Carya illinoinensis HOM05D003956 ORTHO05D004850 0.0e+00 1919.1 970 100.0
QL06p006231 Quercus lobata HOM05D003956 ORTHO05D004850 0.0e+00 1706.0 978 88.7
Haze_01011 Corylus avellana HOM05D003956 ORTHO05D004850 0.0e+00 1704.5 964 89.5
Cfa015539 Carpinus fangiana HOM05D003956 ORTHO05D004850 0.0e+00 1697.2 967 89.3
Prupe.1G146600 Prunus persica HOM05D003956 ORTHO05D004850 0.0e+00 1647.9 977 86.0
TAR365G1004 Trochodendron aralioides HOM05D003956 ORTHO05D004850 0.0e+00 1645.2 976 84.8
Dinv44455 Davidia involucrata HOM05D003956 ORTHO05D004850 0.0e+00 1637.1 973 85.3
Rhsim04G0213100 Rhododendron simsii HOM05D003956 ORTHO05D004850 0.0e+00 1634.8 976 85.1
PGR004G0287 Punica granatum HOM05D003956 ORTHO05D004850 0.0e+00 1632.5 963 85.7
GSVIVG01017850001 Vitis vinifera HOM05D003956 ORTHO05D004850 0.0e+00 1630.9 978 84.3
Atru.chr4.2704 Acer truncatum HOM05D003956 ORTHO05D004850 0.0e+00 1625.5 972 85.1
Duzib212G0153 Durio zibethinus HOM05D003956 ORTHO05D004850 0.0e+00 1621.3 980 84.1
Actinidia23451 Actinidia chinensis HOM05D003956 ORTHO05D004850 0.0e+00 1618.6 978 84.2
MD13G1177500 Malus domestica HOM05D003956 ORTHO05D004850 0.0e+00 1618.6 997 83.1
Gorai.011G181800 Gossypium raimondii HOM05D003956 ORTHO05D004850 0.0e+00 1613.2 982 83.2
MD16G1179500 Malus domestica HOM05D003956 ORTHO05D004850 0.0e+00 1612.0 968 84.5
Manes.03G188300 Manihot esculenta HOM05D003956 ORTHO05D004850 0.0e+00 1610.5 968 84.9
Actinidia40209 Actinidia chinensis HOM05D003956 ORTHO05D004850 0.0e+00 1609.3 979 83.7
TWI09G0935 Tripterygium wilfordii HOM05D003956 ORTHO05D004850 0.0e+00 1609.0 972 83.7
Gohir.D10G162900 Gossypium hirsutum HOM05D003956 ORTHO05D004850 0.0e+00 1607.0 982 83.1
Peaxi162Scf00095g00414 Petunia axillaris HOM05D003956 ORTHO05D004850 0.0e+00 1605.1 973 82.7
CANSAT78G1736 Cannabis sativa HOM05D003956 ORTHO05D004850 0.0e+00 1602.8 971 83.4
Eucgr.H03642 Eucalyptus grandis HOM05D003956 ORTHO05D004850 0.0e+00 1600.9 966 83.4
Potri.010G027800 Populus trichocarpa HOM05D003956 ORTHO05D004850 0.0e+00 1600.9 976 84.0
Ciclev10006837m.g Citrus clementina HOM05D003956 ORTHO05D004850 0.0e+00 1600.5 1004 82.0
Glyma.07G253700 Glycine max HOM05D003956 ORTHO05D004850 0.0e+00 1588.9 966 83.2
CAN.G889.10 Capsicum annuum HOM05D003956 ORTHO05D004850 0.0e+00 1587.8 922 86.3
Nitab4.5_0000059g0230 Nicotiana tabacum HOM05D003956 ORTHO05D004850 0.0e+00 1587.4 901 87.8
CsaV3_3G013930 Cucumis sativus L. HOM05D003956 ORTHO05D004850 0.0e+00 1585.5 971 83.1
Cc03_g02730 Coffea canephora HOM05D003956 ORTHO05D004850 0.0e+00 1585.1 976 82.4
Sed0002405 Sechium edule HOM05D003956 ORTHO05D004850 0.0e+00 1584.3 968 83.2
RcHm_v2.0_Chr4g0420131 Rosa chinensis HOM05D003956 ORTHO05D004850 0.0e+00 1583.9 971 82.3
Nitab4.5_0010477g0010 Nicotiana tabacum HOM05D003956 ORTHO05D004850 0.0e+00 1575.8 915 86.0
Glyma.17G020600 Glycine max HOM05D003956 ORTHO05D004850 0.0e+00 1575.5 970 82.8
Aqoxy2G03183 Aquilegia oxysepala HOM05D003956 ORTHO05D004850 0.0e+00 1574.3 974 81.9
FvH4_4g16670 Fragaria vesca HOM05D003956 ORTHO05D004850 0.0e+00 1573.9 970 82.1
Sopen01g032260 Solanum pennellii HOM05D003956 ORTHO05D004850 0.0e+00 1573.1 973 81.4
Nn3g21184 Nelumbo nucifera HOM05D003956 ORTHO05D004850 0.0e+00 1572.8 975 81.5
CSS0033563 Camellia sinensis var. sinensis HOM05D003956 ORTHO05D004850 0.0e+00 1571.2 875 89.4
FAN22G1243 Fragaria x ananassa HOM05D003956 ORTHO05D004850 0.0e+00 1568.9 970 81.6
Solyc01g080460.3 Solanum lycopersicum HOM05D003956 ORTHO05D004850 0.0e+00 1568.9 973 81.0
FAN12G0499 Fragaria x ananassa HOM05D003956 ORTHO05D004850 0.0e+00 1564.7 980 81.1
FAN12G2270 Fragaria x ananassa HOM05D003956 ORTHO05D004850 0.0e+00 1564.7 980 81.1
TPR.G28132 Trifolium pratense HOM05D003956 ORTHO05D004850 0.0e+00 1562.4 970 81.8
FAN17G1489 Fragaria x ananassa HOM05D003956 ORTHO05D004850 0.0e+00 1561.2 980 81.0
QL06p005921 Quercus lobata HOM05D003956 ORTHO05D004850 0.0e+00 1561.2 873 89.2
THA.LOC104820228 Tarenaya hassleriana HOM05D003956 ORTHO05D004850 0.0e+00 1561.2 968 80.4
Sabra10G0012900 Salix brachista HOM05D003956 ORTHO05D004850 0.0e+00 1559.3 977 82.4
Ca_21564_v3 Cicer arietinum L. HOM05D003956 ORTHO05D004850 0.0e+00 1558.5 964 81.7
Lj4g0014830 Lotus japonicus HOM05D003956 ORTHO05D004850 0.0e+00 1557.7 978 80.3
MD13G1177400 Malus domestica HOM05D003956 ORTHO05D004850 0.0e+00 1557.3 874 88.2
VMungo1215G0684 Vigna mungo HOM05D003956 ORTHO05D004850 0.0e+00 1557.3 896 86.6
Phvul.003G098200 Phaseolus vulgaris HOM05D003956 ORTHO05D004850 0.0e+00 1553.1 966 81.9
Hund20662 Selenicereus undatus HOM05D003956 ORTHO05D004850 0.0e+00 1552.3 976 80.3
FAN07G1911 Fragaria x ananassa HOM05D003956 ORTHO05D004850 0.0e+00 1551.2 980 80.5
Migut.G00282 Erythranthe guttata HOM05D003956 ORTHO05D004850 0.0e+00 1548.9 908 84.6
Lalb_Chr13g0303991 Lupinus albus HOM05D003956 ORTHO05D004850 0.0e+00 1545.0 893 85.7
Cpa.g.sc16.74 Carica papaya HOM05D003956 ORTHO05D004850 0.0e+00 1542.7 891 86.1
Aa31LG9G1910 Aethionema arabicum HOM05D003956 ORTHO05D004850 0.0e+00 1541.2 968 79.8
Duzib151G0049 Durio zibethinus HOM05D003956 ORTHO05D004850 0.0e+00 1539.6 1004 79.2
Thecc.04G272600 Theobroma cacao HOM05D003956 ORTHO05D004850 0.0e+00 1538.1 930 83.7
AL7G39990 Arabidopsis lyrata HOM05D003956 ORTHO05D004850 0.0e+00 1535.8 965 80.0
Lj3C806G12 Lonicera japonica HOM05D003956 ORTHO05D004850 0.0e+00 1535.8 974 80.6
AT4G15530 Arabidopsis thaliana HOM05D003956 ORTHO05D004850 0.0e+00 1534.2 969 79.7
ECA240G3955 Erigeron canadensis HOM05D003956 ORTHO05D004850 0.0e+00 1533.9 895 84.5
Thhalv10024330m.g Eutrema salsugineum HOM05D003956 ORTHO05D004850 0.0e+00 1533.5 971 79.3
Sp7g13780 Schrenkiella parvula HOM05D003956 ORTHO05D004850 0.0e+00 1532.3 970 78.7
A01p22040 Brassica napus HOM05D003956 ORTHO05D004850 0.0e+00 1530.0 971 78.5
BraA01t02110Z Brassica rapa HOM05D003956 ORTHO05D004850 0.0e+00 1530.0 971 78.5
C01p27430 Brassica napus HOM05D003956 ORTHO05D004850 0.0e+00 1526.1 968 78.5
MD16G1179300 Malus domestica HOM05D003956 ORTHO05D004850 0.0e+00 1525.0 857 88.3
BcaNung00266 Brassica carinata HOM05D003956 ORTHO05D004850 0.0e+00 1524.2 964 78.7
MSTRG.10031 Avicennia marina HOM05D003956 ORTHO05D004850 0.0e+00 1523.8 874 86.2
CARHR222330 Cardamine hirsuta HOM05D003956 ORTHO05D004850 0.0e+00 1521.9 963 79.3
Nn4g26122 Nelumbo nucifera HOM05D003956 ORTHO05D004850 0.0e+00 1521.5 874 85.6
BraA03t14011Z Brassica rapa HOM05D003956 ORTHO05D004850 0.0e+00 1521.1 968 78.6
BcaC06g32940 Brassica carinata HOM05D003956 ORTHO05D004850 0.0e+00 1519.6 972 78.4
C07p47210 Brassica napus HOM05D003956 ORTHO05D004850 0.0e+00 1518.1 972 77.7
BolC7t45243H Brassica oleracea HOM05D003956 ORTHO05D004850 0.0e+00 1517.3 972 77.6
BolC1t02682H Brassica oleracea HOM05D003956 ORTHO05D004850 0.0e+00 1516.1 975 77.9
Psat0ss7919g0200 Pisum sativum HOM05D003956 ORTHO05D004850 0.0e+00 1515.4 858 86.9
ATR0626G228 Amborella trichopoda HOM05D003956 ORTHO05D004850 0.0e+00 1515.0 877 84.5
SGA_v2.0_scaffold142G35643 Striga asiatica HOM05D003956 ORTHO05D004850 0.0e+00 1513.0 964 79.7
MSTRG.10030 Avicennia marina HOM05D003956 ORTHO05D004850 0.0e+00 1511.9 880 84.9
arahy.Tifrunner.gnm1.ann1.YQ8C5N Arachis hypogaea HOM05D003956 ORTHO05D004850 0.0e+00 1511.1 970 79.9
arahy.Tifrunner.gnm1.ann1.EQKV61 Arachis hypogaea HOM05D003956 ORTHO05D004850 0.0e+00 1510.7 1017 77.5
SalBow2G1708 Salvia bowleyana HOM05D003956 ORTHO05D004850 0.0e+00 1510.4 874 85.1
Sc25g0004550 Simmondsia chinensis HOM05D003956 ORTHO05D004850 0.0e+00 1510.4 858 86.6
MELO3C006585.2 Cucumis melo HOM05D003956 ORTHO05D004850 0.0e+00 1510.0 844 89.0
MD16G1179400 Malus domestica HOM05D003956 ORTHO05D004850 0.0e+00 1509.2 857 87.9
PSO302G0065 Papaver somniferum HOM05D003956 ORTHO05D004850 0.0e+00 1504.2 972 77.3
A03p49170 Brassica napus HOM05D003956 ORTHO05D004850 0.0e+00 1503.0 954 78.5
PGSC0003DMG400032107 Solanum tuberosum HOM05D003956 ORTHO05D004850 0.0e+00 1501.9 843 87.7
CDE08G0632 Ceratophyllum demersum HOM05D003956 ORTHO05D004850 0.0e+00 1500.7 876 83.9
Hma1.2p1_0511F.1_g169230 Hydrangea macrophylla HOM05D003956 ORTHO05D004850 0.0e+00 1499.2 880 85.5
Lsat_1_v5_gn_5_51481 Lactuca sativa HOM05D003956 ORTHO05D004850 0.0e+00 1498.0 873 84.2
PSO170G3340 Papaver somniferum HOM05D003956 ORTHO05D004850 0.0e+00 1498.0 972 77.2
BcaC09g50248 Brassica carinata HOM05D003956 ORTHO05D004850 0.0e+00 1497.6 873 84.2
Duzib151G0209 Durio zibethinus HOM05D003956 ORTHO05D004850 0.0e+00 1486.5 873 84.2
Thecc.04G272800 Theobroma cacao HOM05D003956 ORTHO05D004850 0.0e+00 1482.6 875 84.1
DCAR_023283 Daucus carota HOM05D003956 ORTHO05D004850 0.0e+00 1481.8 971 78.0
vmacro08238 Vaccinium macrocarpon HOM05D003956 ORTHO05D004850 0.0e+00 1481.1 1089 72.2
Os05g0405000 Oryza sativa ssp. japonica HOM05D003956 ORTHO05D004850 0.0e+00 1478.8 886 81.5
Zm00001eb349810 Zea mays HOM05D003956 ORTHO05D004850 0.0e+00 1478.8 880 82.0
Carub.0007s2635 Capsella rubella HOM05D003956 ORTHO05D004850 0.0e+00 1475.7 858 84.5
arahy.Tifrunner.gnm1.ann1.I3NY02 Arachis hypogaea HOM05D003956 ORTHO05D004850 0.0e+00 1472.6 902 81.7
CDE02G0811 Ceratophyllum demersum HOM05D003956 ORTHO05D004850 0.0e+00 1468.8 893 81.5
EL10Ac1g01820 Beta vulgaris HOM05D003956 ORTHO05D004850 0.0e+00 1465.3 971 77.0
ClCG05G005590 Citrullus lanatus HOM05D003956 ORTHO05D004850 0.0e+00 1463.0 963 78.6
Hund19586 Selenicereus undatus HOM05D003956 ORTHO05D004850 0.0e+00 1446.0 844 83.2
PGR031G3666 Punica granatum HOM05D003956 ORTHO05D004850 0.0e+00 1436.8 854 82.6
Rhsim02G0016700 Rhododendron simsii HOM05D003956 ORTHO05D004850 0.0e+00 1435.6 882 82.2
Ah.11g043140 Amaranthus hybridus HOM05D003956 ORTHO05D004850 0.0e+00 1433.3 951 76.9
Mapoly0009s0124 Marchantia polymorpha HOM05D003956 ORTHO05D004850 0.0e+00 1423.3 890 78.0
AagrBONN_evm.TU.Sc2ySwM_228.3276 Anthoceros agrestis HOM05D003956 ORTHO05D004850 0.0e+00 1420.6 891 77.4
SMO351G0542 Selaginella moellendorffii HOM05D003956 ORTHO05D004850 0.0e+00 1402.5 872 78.2
Pp3c5_22540 Physcomitrium patens HOM05D003956 ORTHO05D004850 0.0e+00 1397.5 889 76.8
Actinidia32373 Actinidia chinensis HOM05D003956 ORTHO05D004850 0.0e+00 1391.7 878 80.8
Eucgr.B01186 Eucalyptus grandis HOM05D003956 ORTHO05D004850 0.0e+00 1388.6 823 82.5
Oeu032695.1 Olea europaea HOM05D003956 ORTHO05D004850 0.0e+00 1385.9 774 87.7
unitig_26.g8936 Utricularia gibba HOM05D003956 ORTHO05D004850 0.0e+00 1379.8 874 79.4
Psat4g028880 Pisum sativum HOM05D003956 ORTHO05D004850 0.0e+00 1377.8 803 83.7
arahy.Tifrunner.gnm1.ann1.DC6B04 Arachis hypogaea HOM05D003956 ORTHO05D004850 0.0e+00 1376.3 902 77.4
CSS0013368 Camellia sinensis var. sinensis HOM05D003956 ORTHO05D004850 0.0e+00 1353.2 803 84.8
CSS0018237 Camellia sinensis var. sinensis HOM05D003956 ORTHO05D004850 0.0e+00 1323.1 886 78.4
Gohir.A10G105700 Gossypium hirsutum HOM05D003956 ORTHO05D004850 0.0e+00 1319.7 824 81.1
Hma1.2p1_2025F.1_g311530 Hydrangea macrophylla HOM05D003956 ORTHO05D004850 0.0e+00 1319.3 879 77.8
vmacro15287 Vaccinium macrocarpon HOM05D003956 ORTHO05D004850 0.0e+00 1291.2 875 75.8
Zm00001eb287770 Zea mays HOM05D003956 ORTHO05D004850 0.0e+00 1245.7 730 83.4
BcaC09g50243 Brassica carinata HOM05D003956 ORTHO05D004850 0.0e+00 1239.9 779 79.2
TPR.G28133 Trifolium pratense HOM05D003956 ORTHO05D004850 0.0e+00 1222.2 874 71.7
MCO12G211 Micromonas commoda HOM05D003956 ORTHO05D004850 0.0e+00 1209.5 857 69.2
Cre17.g734548 Chlamydomonas reinhardtii HOM05D003956 ORTHO05D004850 0.0e+00 1194.1 875 67.2
unitig_749.g14056 Utricularia gibba HOM05D003956 ORTHO05D004850 0.0e+00 1100.1 633 84.8
Cre10.g424750 Chlamydomonas reinhardtii HOM05D003956 ORTHO05D004850 6.8e-307 1057.4 883 60.6
Migut.G00280 Erythranthe guttata HOM05D003956 ORTHO05D004850 1.7e-302 1042.7 581 87.1
Medtr4g118350 Medicago truncatula HOM05D003956 ORTHO05D004850 1.7e-281 973.0 583 83.2
MCO01G687 Micromonas commoda HOM05D003956 ORTHO05D004850 1.5e-261 906.7 908 54.2
AUR62034950 Chenopodium quinoa HOM05D003956 ORTHO05D004850 1.0e-225 787.7 543 74.0
AUR62035455 Chenopodium quinoa HOM05D003956 ORTHO05D004850 7.9e-223 778.1 519 75.7
AUR62035456 Chenopodium quinoa HOM05D003956 ORTHO05D004850 3.8e-217 759.2 505 77.6
AUR62034949 Chenopodium quinoa HOM05D003956 ORTHO05D004850 9.2e-195 684.9 451 77.4
HanXRQChr03g0080571 Helianthus annuus HOM05D003956 ORTHO05D004850 7.3e-192 675.2 488 70.7
CBR_g50184 Chara braunii HOM05D003956 ORTHO05D004850 2.6e-189 666.8 744 50.5
SGA_v2.0_scaffold86G26866 Striga asiatica HOM05D003956 ORTHO05D004850 9.5e-168 595.1 467 67.7
BcaC06g33414 Brassica carinata HOM05D003956 ORTHO05D004850 1.7e-161 574.3 338 84.0
SGA_v2.0_scaffold86G26865 Striga asiatica HOM05D003956 ORTHO05D004850 1.1e-139 501.9 391 66.5
Medtr4g118355 Medicago truncatula HOM05D003956 ORTHO05D004850 3.2e-139 500.4 296 83.8
AUR62034328 Chenopodium quinoa HOM05D003956 ORTHO05D004850 3.0e-113 414.1 423 54.6
arahy.Tifrunner.gnm1.ann1.9WT78J Arachis hypogaea HOM05D003956 ORTHO05D004850 3.2e-107 394.0 318 66.7
HanXRQChr16g0518081 Helianthus annuus HOM05D003956 ORTHO05D004850 6.5e-92 343.2 218 77.1
arahy.Tifrunner.gnm1.ann1.HZTZ4X Arachis hypogaea HOM05D003956 ORTHO05D004850 2.7e-90 337.8 266 67.3
arahy.Tifrunner.gnm1.ann1.7LSJ4G Arachis hypogaea HOM05D003956 ORTHO05D004850 1.7e-71 275.4 227 67.0
arahy.Tifrunner.gnm1.ann1.989M5Y Arachis hypogaea HOM05D003956 ORTHO05D004850 8.9e-65 253.1 216 63.0
unitig_749.g14057 Utricularia gibba HOM05D003956 ORTHO05D004850 1.1e-59 236.1 151 76.8
AagrBONN_evm.TU.Sc2ySwM_362.937 Anthoceros agrestis HOM05D003956 ORTHO05D004850 7.6e-48 196.8 119 77.3
arahy.Tifrunner.gnm1.ann1.S9XVUY Arachis hypogaea HOM05D003956 ORTHO05D004850 4.3e-43 181.0 268 43.3
Pp3c6_6540 Physcomitrium patens HOM05D003956 ORTHO05D004850 1.9e-38 165.6 112 71.4
BcaC09g50244 Brassica carinata HOM05D003956 ORTHO05D004850 6.2e-34 150.6 85 84.7
arahy.Tifrunner.gnm1.ann1.LGH8AH Arachis hypogaea HOM05D003956 ORTHO05D004850 4.9e-31 141.0 83 81.9
GSVIVG01018502001 Vitis vinifera HOM05D003956 ORTHO05D004850 2.1e-29 135.6 81 81.5
Lsat_1_v5_gn_2_81921 Lactuca sativa HOM05D005278 ORTHO05D006500 7.9e-29 133.7 90 70.0
QL06p005983 Quercus lobata HOM05D003956 ORTHO05D004850 1.6e-26 125.9 130 57.7
arahy.Tifrunner.gnm1.ann1.G5444S Arachis hypogaea HOM05D003956 ORTHO05D004850 4.5e-24 117.9 95 67.4
Pp3s196_40 Physcomitrium patens HOM05D003956 ORTHO05D044360 5.8e-24 117.5 454 27.3
TPR.G26738 Trifolium pratense HOM05D003956 ORTHO05D000576 1.3e-18 99.8 56 78.6
TPR.G35464 Trifolium pratense HOM05D003956 ORTHO05D004850 4.5e-16 91.3 60 70.0
MBI15_g32557_MAGBIO Magnolia biondii HOM05D001670 ORTHO05D011598 7.9e-13 80.5 57 71.9
arahy.Tifrunner.gnm1.ann1.V4Y3U4 Arachis hypogaea HOM05D003956 ORTHO05D004850 1.3e-10 73.2 49 71.4
SGA_v2.0_scaffold86G26869 Striga asiatica HOM05D000924 ORTHO05D001209 1.6e-10 72.8 46 78.3
arahy.Tifrunner.gnm1.ann1.57CL3B Arachis hypogaea HOM05D003956 ORTHO05D004850 2.2e-10 72.4 46 73.9
Nn8g40271 Nelumbo nucifera HOM05D001541 ORTHO05D001465 3.7e-10 71.6 119 42.0
HanXRQChr09g0261911 Helianthus annuus HOM05D000495 ORTHO05D000357 1.8e-09 69.3 43 76.7
Pp3c5_22980 Physcomitrium patens HOM05D003956 ORTHO05D004850 3.4e-08 65.1 43 69.8
arahy.Tifrunner.gnm1.ann1.GGZS5I Arachis hypogaea HOM05D003956 ORTHO05D004850 2.2e-07 62.4 56 62.5


User provided reference genes

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