Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.01G155300 Carya illinoinensis HOM05D004069 ORTHO05D004699 2.2e-57 225.3 107 100.0
Cfa015517 Carpinus fangiana HOM05D004069 ORTHO05D004699 3.3e-53 211.5 107 91.6
CiPaw.02G087900 Carya illinoinensis HOM05D004069 ORTHO05D004699 4.7e-52 207.6 107 88.8
Atru.chr4.2722 Acer truncatum HOM05D004069 ORTHO05D004699 5.2e-51 204.1 107 86.9
CsaV3_1G037430 Cucumis sativus L. HOM05D004069 ORTHO05D004699 1.2e-50 203.0 107 85.0
Manes.03G189600 Manihot esculenta HOM05D004069 ORTHO05D004699 1.5e-50 202.6 107 87.9
Cpa.g.sc16.88 Carica papaya HOM05D004069 ORTHO05D004699 2.0e-50 202.2 107 86.0
Sed0000717 Sechium edule HOM05D004069 ORTHO05D004699 2.0e-50 202.2 107 86.0
Manes.15G019000 Manihot esculenta HOM05D004069 ORTHO05D004699 3.4e-50 201.4 107 87.9
CANSAT54G0205 Cannabis sativa HOM05D004069 ORTHO05D004699 5.8e-50 200.7 107 85.0
Prupe.1G144300 Prunus persica HOM05D004069 ORTHO05D004699 5.8e-50 200.7 105 86.7
RcHm_v2.0_Chr4g0420511 Rosa chinensis HOM05D004069 ORTHO05D004699 1.7e-49 199.1 107 85.0
Sabra10G0013600 Salix brachista HOM05D004069 ORTHO05D004699 1.7e-49 199.1 106 86.8
Potri.008G196600 Populus trichocarpa HOM05D004069 ORTHO05D004699 2.9e-49 198.4 105 86.7
FvH4_4g16930 Fragaria vesca HOM05D004069 ORTHO05D004699 3.7e-49 198.0 107 85.0
FAN12G1790 Fragaria x ananassa HOM05D004069 ORTHO05D004699 3.7e-49 198.0 107 85.0
FAN12G4073 Fragaria x ananassa HOM05D004069 ORTHO05D004699 3.7e-49 198.0 107 85.0
Potri.010G026000 Populus trichocarpa HOM05D004069 ORTHO05D004699 6.4e-49 197.2 106 85.8
FAN07G2596 Fragaria x ananassa HOM05D004069 ORTHO05D004699 8.3e-49 196.8 107 84.1
FAN22G1255 Fragaria x ananassa HOM05D004069 ORTHO05D004699 8.3e-49 196.8 107 84.1
PGR031G1560 Punica granatum HOM05D004069 ORTHO05D004699 8.3e-49 196.8 105 85.7
Sabra08G0163600 Salix brachista HOM05D004069 ORTHO05D004699 8.3e-49 196.8 105 85.7
MD10G1048000 Malus domestica HOM05D004069 ORTHO05D004699 1.1e-48 196.4 105 83.8
THA.LOC104818836 Tarenaya hassleriana HOM05D004069 ORTHO05D004699 1.1e-48 196.4 107 82.2
GSVIVG01017834001 Vitis vinifera HOM05D004069 ORTHO05D004699 1.1e-48 196.4 107 85.0
Ciclev10006197m.g Citrus clementina HOM05D004069 ORTHO05D004699 1.4e-48 196.1 107 83.2
FAN17G0096 Fragaria x ananassa HOM05D004069 ORTHO05D004699 1.9e-48 195.7 107 84.1
MD05G1041600 Malus domestica HOM05D004069 ORTHO05D004699 1.9e-48 195.7 105 84.8
Eucgr.H03663 Eucalyptus grandis HOM05D004069 ORTHO05D004699 3.2e-48 194.9 107 83.2
MD13G1175600 Malus domestica HOM05D004069 ORTHO05D004699 3.2e-48 194.9 105 83.8
Sed0022789 Sechium edule HOM05D004069 ORTHO05D004699 5.4e-48 194.1 105 82.9
TWI73G0788 Tripterygium wilfordii HOM05D004069 ORTHO05D004699 9.2e-48 193.4 107 81.3
BcaB01g05275 Brassica carinata HOM05D004069 ORTHO05D004699 1.2e-47 193.0 107 82.2
BcaC03g13618 Brassica carinata HOM05D004069 ORTHO05D004699 1.2e-47 193.0 107 82.2
A03p09140 Brassica napus HOM05D004069 ORTHO05D004699 1.2e-47 193.0 107 82.2
A10p20810 Brassica napus HOM05D004069 ORTHO05D004699 1.2e-47 193.0 107 82.2
C03p10670 Brassica napus HOM05D004069 ORTHO05D004699 1.2e-47 193.0 107 82.2
BolC2t06916H Brassica oleracea HOM05D004069 ORTHO05D004699 1.2e-47 193.0 107 82.2
BolC3t13543H Brassica oleracea HOM05D004069 ORTHO05D004699 1.2e-47 193.0 107 82.2
BraA03t10237Z Brassica rapa HOM05D004069 ORTHO05D004699 1.2e-47 193.0 107 82.2
BraA10t44146Z Brassica rapa HOM05D004069 ORTHO05D004699 1.2e-47 193.0 107 82.2
Eucgr.B01248 Eucalyptus grandis HOM05D004069 ORTHO05D004699 1.2e-47 193.0 105 83.8
Hma1.2p1_1671F.1_g296710 Hydrangea macrophylla HOM05D004069 ORTHO05D004699 1.2e-47 193.0 103 83.5
TWI09G1514 Tripterygium wilfordii HOM05D004069 ORTHO05D004699 1.6e-47 192.6 107 81.3
Actinidia32378 Actinidia chinensis HOM05D004069 ORTHO05D004699 2.1e-47 192.2 107 80.4
AL6G30150 Arabidopsis lyrata HOM05D004069 ORTHO05D004699 2.1e-47 192.2 107 81.3
AT5G18800 Arabidopsis thaliana HOM05D004069 ORTHO05D004699 2.1e-47 192.2 107 81.3
BcaC04g18646 Brassica carinata HOM05D004069 ORTHO05D004699 2.1e-47 192.2 107 81.3
BolC9t58640H Brassica oleracea HOM05D004069 ORTHO05D004699 2.1e-47 192.2 107 81.3
Carub.0006s1710 Capsella rubella HOM05D004069 ORTHO05D004699 2.1e-47 192.2 107 81.3
PGR004G0388 Punica granatum HOM05D004069 ORTHO05D004699 2.1e-47 192.2 107 82.2
QL06p006731 Quercus lobata HOM05D004069 ORTHO05D004699 2.1e-47 192.2 105 82.9
BcaB08g36643 Brassica carinata HOM05D004069 ORTHO05D004699 3.5e-47 191.4 107 81.3
Carub.0003s0574 Capsella rubella HOM05D004069 ORTHO05D004699 3.5e-47 191.4 105 81.9
Cc03_g02560 Coffea canephora HOM05D004069 ORTHO05D004699 3.5e-47 191.4 105 81.0
Thhalv10015085m.g Eutrema salsugineum HOM05D004069 ORTHO05D004699 3.5e-47 191.4 107 81.3
Glyma.01G145000 Glycine max HOM05D004069 ORTHO05D004699 3.5e-47 191.4 107 82.2
PGR031G3162 Punica granatum HOM05D004069 ORTHO05D004699 3.5e-47 191.4 105 82.9
C09p57690 Brassica napus HOM05D004069 ORTHO05D004699 4.6e-47 191.0 107 80.4
Hma1.2p1_0078F.1_g040910 Hydrangea macrophylla HOM05D004069 ORTHO05D004699 4.6e-47 191.0 103 82.5
VMungo0331G0279 Vigna mungo HOM05D004069 ORTHO05D004699 4.6e-47 191.0 107 81.3
BcaB01g04889 Brassica carinata HOM05D004069 ORTHO05D004699 6.0e-47 190.7 104 82.7
CARHR194200 Cardamine hirsuta HOM05D004069 ORTHO05D004699 6.0e-47 190.7 107 80.4
Eucgr.B01240 Eucalyptus grandis HOM05D004069 ORTHO05D004699 6.0e-47 190.7 105 82.9
Sp6g25590 Schrenkiella parvula HOM05D004069 ORTHO05D004699 6.0e-47 190.7 107 80.4
Actinidia23443 Actinidia chinensis HOM05D004069 ORTHO05D004699 7.8e-47 190.3 107 79.4
arahy.Tifrunner.gnm1.ann1.EYX6XU Arachis hypogaea HOM05D004069 ORTHO05D004699 7.8e-47 190.3 107 81.3
BraA02t05469Z Brassica rapa HOM05D004069 ORTHO05D004699 7.8e-47 190.3 107 80.4
HanXRQChr13g0410171 Helianthus annuus HOM05D004069 ORTHO05D004699 7.8e-47 190.3 107 79.4
vmacro08226 Vaccinium macrocarpon HOM05D004069 ORTHO05D004699 1.3e-46 189.5 106 80.2
arahy.Tifrunner.gnm1.ann1.J8E67M Arachis hypogaea HOM05D004069 ORTHO05D004699 1.7e-46 189.1 107 80.4
Thhalv10021810m.g Eutrema salsugineum HOM05D004069 ORTHO05D004699 1.7e-46 189.1 105 81.0
Glyma.03G021800 Glycine max HOM05D004069 ORTHO05D004699 1.7e-46 189.1 107 81.3
Aa31LG11G10890 Aethionema arabicum HOM05D004069 ORTHO05D004699 2.3e-46 188.7 107 80.4
CARHR080830 Cardamine hirsuta HOM05D004069 ORTHO05D004699 2.3e-46 188.7 105 80.0
Lj3g0025312 Lotus japonicus HOM05D004069 ORTHO05D004699 2.3e-46 188.7 107 80.4
AL3G17240 Arabidopsis lyrata HOM05D004069 ORTHO05D004699 3.0e-46 188.3 105 80.0
Medtr8g035900 Medicago truncatula HOM05D004069 ORTHO05D004699 3.0e-46 188.3 107 80.4
Nitab4.5_0001714g0140 Nicotiana tabacum HOM05D004069 ORTHO05D004699 3.0e-46 188.3 104 80.8
Nitab4.5_0009882g0010 Nicotiana tabacum HOM05D004069 ORTHO05D004699 3.0e-46 188.3 104 80.8
CSS0012120 Camellia sinensis var. sinensis HOM05D004069 ORTHO05D004699 3.9e-46 188.0 106 81.1
ECA240G0933 Erigeron canadensis HOM05D004069 ORTHO05D004699 3.9e-46 188.0 107 79.4
Sp3g05220 Schrenkiella parvula HOM05D004069 ORTHO05D004699 3.9e-46 188.0 106 79.2
VMungo0331G0995 Vigna mungo HOM05D004069 ORTHO05D004699 3.9e-46 188.0 107 79.4
Nn3g21235 Nelumbo nucifera HOM05D004069 ORTHO05D004699 5.1e-46 187.6 104 79.8
Psat4g149640 Pisum sativum HOM05D004069 ORTHO05D004699 5.1e-46 187.6 106 81.1
Actinidia00062 Actinidia chinensis HOM05D004069 ORTHO05D004699 6.6e-46 187.2 107 76.6
MD16G1177400 Malus domestica HOM05D004069 ORTHO05D004699 6.6e-46 187.2 105 80.0
AT3G06310 Arabidopsis thaliana HOM05D004069 ORTHO05D004699 8.6e-46 186.8 105 79.0
Nn4g26079 Nelumbo nucifera HOM05D004069 ORTHO05D004699 2.5e-45 185.3 104 78.8
Hund07638 Selenicereus undatus HOM05D004069 ORTHO05D004699 2.5e-45 185.3 107 78.5
Actinidia40204 Actinidia chinensis HOM05D004069 ORTHO05D004699 3.3e-45 184.9 107 76.6
Sc11g0003950 Simmondsia chinensis HOM05D004069 ORTHO05D004699 3.3e-45 184.9 104 77.9
A02p05100 Brassica napus HOM05D000415 ORTHO05D002707 4.3e-45 184.5 102 82.4
C02p10150 Brassica napus HOM05D000415 ORTHO05D002707 4.3e-45 184.5 102 82.4
CAN.G981.42 Capsicum annuum HOM05D004069 ORTHO05D004699 4.3e-45 184.5 104 78.8
DCAR_002434 Daucus carota HOM05D004069 ORTHO05D004699 4.3e-45 184.5 105 79.0
HanXRQChr03g0079731 Helianthus annuus HOM05D004069 ORTHO05D004699 4.3e-45 184.5 107 77.6
Lsat_1_v5_gn_5_49720 Lactuca sativa HOM05D004069 ORTHO05D004699 4.3e-45 184.5 105 79.0
Phvul.010G048500 Phaseolus vulgaris HOM05D004069 ORTHO05D004699 4.3e-45 184.5 107 77.6
THA.LOC104827125 Tarenaya hassleriana HOM05D004069 ORTHO05D004699 4.3e-45 184.5 107 79.4
Lalb_Chr13g0291661 Lupinus albus HOM05D004069 ORTHO05D004699 7.3e-45 183.7 107 78.5
Solyc08g080240.3 Solanum lycopersicum HOM05D004069 ORTHO05D004699 7.3e-45 183.7 104 78.8
Sopen08g028590 Solanum pennellii HOM05D004069 ORTHO05D004699 7.3e-45 183.7 104 78.8
TPR.G36608 Trifolium pratense HOM05D004069 ORTHO05D004699 7.3e-45 183.7 105 79.0
TAR362G0867 Trochodendron aralioides HOM05D004069 ORTHO05D004699 9.5e-45 183.3 105 78.1
vmacro15276 Vaccinium macrocarpon HOM05D004069 ORTHO05D004699 9.5e-45 183.3 109 77.1
Gohir.D10G164800 Gossypium hirsutum HOM05D004069 ORTHO05D004699 2.1e-44 182.2 107 75.7
Gorai.011G184000 Gossypium raimondii HOM05D004069 ORTHO05D004699 2.1e-44 182.2 107 75.7
Peaxi162Scf00620g00918 Petunia axillaris HOM05D004069 ORTHO05D004699 2.1e-44 182.2 104 77.9
PGSC0003DMG400022739 Solanum tuberosum HOM05D004069 ORTHO05D004699 2.8e-44 181.8 103 77.7
EL10Ac9g21174 Beta vulgaris HOM05D004069 ORTHO05D004699 6.2e-44 180.6 98 82.7
Ah.01g005950 Amaranthus hybridus HOM05D004069 ORTHO05D004699 1.4e-43 179.5 98 82.7
Hund24899 Selenicereus undatus HOM05D004069 ORTHO05D004699 1.4e-43 179.5 107 77.6
Thecc.04G274500 Theobroma cacao HOM05D004069 ORTHO05D004699 1.4e-43 179.5 107 74.8
Duzib151G0641 Durio zibethinus HOM05D004069 ORTHO05D004699 1.8e-43 179.1 107 73.8
Gohir.A10G103600 Gossypium hirsutum HOM05D004069 ORTHO05D004699 1.8e-43 179.1 107 74.8
Gohir.A09G232800 Gossypium hirsutum HOM05D004069 ORTHO05D004699 2.4e-43 178.7 107 72.9
Lalb_Chr07g0189611 Lupinus albus HOM05D004069 ORTHO05D004699 4.0e-43 177.9 107 73.8
Duzib212G0467 Durio zibethinus HOM05D004069 ORTHO05D004699 5.2e-43 177.6 105 74.3
Gohir.D09G233900 Gossypium hirsutum HOM05D004069 ORTHO05D004699 5.2e-43 177.6 107 72.9
Gorai.006G256800 Gossypium raimondii HOM05D004069 ORTHO05D004699 6.8e-43 177.2 107 72.0
ATR0208G034 Amborella trichopoda HOM05D004069 ORTHO05D004699 1.2e-42 176.4 105 75.2
Sc19g0004820 Simmondsia chinensis HOM05D004069 ORTHO05D004699 1.5e-42 176.0 107 74.8
AUR62022250 Chenopodium quinoa HOM05D004069 ORTHO05D004699 2.0e-42 175.6 98 79.6
Rhsim02G0014600 Rhododendron simsii HOM05D004069 ORTHO05D004699 2.6e-42 175.3 108 74.1
Duzib052G0156 Durio zibethinus HOM05D004069 ORTHO05D004699 7.6e-42 173.7 107 71.0
Hma1.2p1_0643F.1_g194630 Hydrangea macrophylla HOM05D004069 ORTHO05D004699 1.3e-41 172.9 110 74.5
Os03g0295500 Oryza sativa ssp. japonica HOM05D004069 ORTHO05D004699 1.3e-41 172.9 104 72.1
Zm00001eb396890 Zea mays HOM05D004069 ORTHO05D004699 2.2e-41 172.2 104 71.2
Aqoxy2G03156 Aquilegia oxysepala HOM05D004069 ORTHO05D004699 3.8e-41 171.4 104 74.0
PSO832G3814 Papaver somniferum HOM05D004069 ORTHO05D004699 4.9e-41 171.0 104 74.0
HPP92_001127 Vanilla planifolia HOM05D004069 ORTHO05D004699 6.4e-41 170.6 103 70.9
CDE09G1375 Ceratophyllum demersum HOM05D004069 ORTHO05D004699 8.4e-41 170.2 105 69.5
PSO210G4490 Papaver somniferum HOM05D004069 ORTHO05D004699 8.4e-41 170.2 104 73.1
Oeu007709.1 Olea europaea HOM05D004069 ORTHO05D004699 1.1e-40 169.9 107 71.0
Aqoxy5G00598 Aquilegia oxysepala HOM05D004069 ORTHO05D004699 1.9e-40 169.1 107 72.9
Zm00001eb013640 Zea mays HOM05D004069 ORTHO05D004699 1.9e-40 169.1 110 69.1
HanXRQChr03g0080011 Helianthus annuus HOM05D004069 ORTHO05D004699 9.2e-40 166.8 88 81.8
Migut.F02022 Erythranthe guttata HOM05D004069 ORTHO05D004699 1.6e-39 166.0 105 71.4
Rhsim04G0214300 Rhododendron simsii HOM05D004069 ORTHO05D004699 7.8e-39 163.7 169 52.1
unitig_46.g18583 Utricularia gibba HOM05D004069 ORTHO05D004699 7.8e-39 163.7 105 67.6
TAR633G1540 Trochodendron aralioides HOM05D004069 ORTHO05D004699 2.3e-38 162.2 86 80.2
Haze_01035 Corylus avellana HOM05D004069 ORTHO05D004699 3.9e-38 161.4 82 91.5
MSTRG.9205 Avicennia marina HOM05D004069 ORTHO05D004699 5.1e-38 161.0 98 69.4
unitig_37.g12295 Utricularia gibba HOM05D004069 ORTHO05D004699 2.8e-36 155.2 106 63.2
SEGI_25177 Sequoiadendron giganteum HOM05D004069 ORTHO05D004699 4.7e-36 154.5 100 66.0
Lsat_1_v5_gn_5_51221 Lactuca sativa HOM05D004069 ORTHO05D004699 4.9e-33 144.4 78 78.2
THA.LOC104802732 Tarenaya hassleriana HOM05D004069 ORTHO05D004699 9.3e-32 140.2 80 77.5
Pp3c10_17050 Physcomitrium patens HOM05D004069 ORTHO05D004699 2.7e-31 138.7 106 62.3
Dinv44442 Davidia involucrata HOM05D004069 ORTHO05D004699 6.0e-31 137.5 72 79.2
CBR_g31386 Chara braunii HOM05D004069 ORTHO05D004699 1.3e-30 136.3 100 63.0
Mapoly0119s0025 Marchantia polymorpha HOM05D004069 ORTHO05D004699 3.0e-30 135.2 95 62.1
Pp3c4_6220 Physcomitrium patens HOM05D004069 ORTHO05D004699 3.0e-30 135.2 102 59.8
Dinv38340 Davidia involucrata HOM05D004069 ORTHO05D004699 3.9e-30 134.8 103 61.2
Pp3c3_33480 Physcomitrium patens HOM05D004069 ORTHO05D004699 3.9e-30 134.8 102 60.8
CDE02G1037 Ceratophyllum demersum HOM05D003181 ORTHO05D003689 8.1e-28 127.1 82 67.1
SMO146G0136 Selaginella moellendorffii HOM05D004069 ORTHO05D004699 4.5e-26 121.3 98 51.0
CSS0016731 Camellia sinensis var. sinensis HOM05D004069 ORTHO05D004699 1.3e-25 119.8 73 72.6
ClCG03G006350 Citrullus lanatus HOM05D004069 ORTHO05D004699 2.1e-23 112.5 67 76.1
MELO3C035505.2 Cucumis melo HOM05D004069 ORTHO05D004699 2.7e-23 112.1 63 79.4
PGSC0003DMG400012496 Solanum tuberosum HOM05D004069 ORTHO05D004699 6.7e-22 107.5 71 67.6
Ca_23836_v3 Cicer arietinum L. HOM05D004069 ORTHO05D004699 1.1e-21 106.7 63 79.4
CANSAT54G1967 Cannabis sativa HOM05D004069 ORTHO05D004699 7.4e-21 104.0 59 81.4
MCO10G196 Micromonas commoda HOM05D004069 ORTHO05D004699 2.8e-20 102.1 92 47.8
Oeu055049.1 Olea europaea HOM05D005940 ORTHO05D007027 3.1e-19 98.6 69 68.1
HanXRQChr05g0152631 Helianthus annuus HOM05D001685 ORTHO05D007488 6.9e-19 97.4 60 73.3
Lsat_1_v5_gn_5_162901 Lactuca sativa HOM05D004069 ORTHO05D004699 3.4e-18 95.1 63 73.0
PRCOL_00002240 Prasinoderma coloniale HOM05D004069 ORTHO05D004699 2.2e-17 92.4 92 42.4
AUR62031965 Chenopodium quinoa HOM05D004069 ORTHO05D004699 8.4e-17 90.5 54 75.9
SGA_v2.0_scaffold122G33247 Striga asiatica HOM05D002362 ORTHO05D002465 1.1e-16 90.1 55 72.7
Solyc08g007805.1 Solanum lycopersicum HOM05D004069 ORTHO05D004699 1.9e-16 89.4 54 70.4
Ah.01g017180 Amaranthus hybridus HOM05D004069 ORTHO05D004699 2.4e-16 89.0 55 69.1
MBI18_g15803_MAGBIO Magnolia biondii HOM05D004069 ORTHO05D004699 3.2e-16 88.6 41 90.2
Ah.01g017190 Amaranthus hybridus HOM05D004069 ORTHO05D004699 6.0e-15 84.3 48 79.2
VMungo0720G1128 Vigna mungo HOM05D004069 ORTHO05D004699 1.5e-13 79.7 55 67.3
VMungo0251G3681 Vigna mungo HOM05D039118 ORTHO05D004699 1.6e-12 76.3 44 72.7
Cre07.g333900 Chlamydomonas reinhardtii HOM05D004069 ORTHO05D004699 7.1e-08 60.8 94 30.9


User provided reference genes

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