Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.01G151500 Carya illinoinensis HOM05D005803 ORTHO05D008090 7.4e-298 1026.5 561 100.0
Cfa015360 Carpinus fangiana HOM05D005803 ORTHO05D008090 1.6e-279 965.7 561 88.6
Haze_01246 Corylus avellana HOM05D005803 ORTHO05D008090 4.4e-274 947.6 600 82.8
QL06p007721 Quercus lobata HOM05D005803 ORTHO05D008090 1.5e-269 932.6 560 85.4
GSVIVG01017783001 Vitis vinifera HOM05D005803 ORTHO05D008090 2.9e-262 908.3 561 82.0
CsaV3_6G017350 Cucumis sativus L. HOM05D005803 ORTHO05D008090 6.8e-259 897.1 561 82.2
Prupe.1G140200 Prunus persica HOM05D005803 ORTHO05D008090 9.8e-258 893.3 561 81.6
Ciclev10004654m.g Citrus clementina HOM05D005803 ORTHO05D008090 6.4e-257 890.6 562 80.8
RcHm_v2.0_Chr4g0421441 Rosa chinensis HOM05D005803 ORTHO05D008090 7.0e-256 887.1 561 81.5
CANSAT78G2259 Cannabis sativa HOM05D005803 ORTHO05D008090 2.7e-255 885.2 561 86.6
CSS0017376 Camellia sinensis var. sinensis HOM05D005803 ORTHO05D008090 1.0e-254 883.2 561 80.2
CSS0035312 Camellia sinensis var. sinensis HOM05D005803 ORTHO05D008090 1.0e-254 883.2 561 80.2
Lj6g0003207 Lotus japonicus HOM05D005803 ORTHO05D008090 2.3e-254 882.1 561 80.6
Hma1.2p1_0698F.1_g205430 Hydrangea macrophylla HOM05D005803 ORTHO05D008090 1.1e-253 879.8 561 80.0
MD16G1173300 Malus domestica HOM05D005803 ORTHO05D008090 1.5e-253 879.4 562 80.2
Thecc.04G279700 Theobroma cacao HOM05D005803 ORTHO05D008090 6.2e-252 874.0 562 79.7
Glyma.15G096000 Glycine max HOM05D005803 ORTHO05D008090 8.0e-252 873.6 561 81.1
Ca_00559_v3 Cicer arietinum L. HOM05D005803 ORTHO05D008090 1.8e-251 872.5 561 82.5
PGR031G1735 Punica granatum HOM05D005803 ORTHO05D008090 1.8e-251 872.5 562 78.8
TWI09G0274 Tripterygium wilfordii HOM05D005803 ORTHO05D008090 6.8e-251 870.5 563 79.9
Gohir.A10G161600 Gossypium hirsutum HOM05D005803 ORTHO05D008090 1.2e-250 869.8 562 79.9
Manes.15G015300 Manihot esculenta HOM05D005803 ORTHO05D008090 1.5e-250 869.4 561 80.2
Psat1g187960 Pisum sativum HOM05D005803 ORTHO05D008090 1.5e-250 869.4 561 79.7
Glyma.13G216500 Glycine max HOM05D005803 ORTHO05D008090 7.5e-250 867.1 561 80.6
Potri.008G215100 Populus trichocarpa HOM05D005803 ORTHO05D008090 1.3e-249 866.3 561 79.9
Sabra08G0155700 Salix brachista HOM05D005803 ORTHO05D008090 1.3e-249 866.3 561 79.7
VMungo0540G0998 Vigna mungo HOM05D005803 ORTHO05D008090 1.3e-249 866.3 561 80.0
ClCG06G005310 Citrullus lanatus HOM05D005803 ORTHO05D008090 4.9e-249 864.4 626 74.0
MD13G1171800 Malus domestica HOM05D005803 ORTHO05D008090 1.4e-248 862.8 562 79.0
Sed0014775 Sechium edule HOM05D005803 ORTHO05D008090 2.7e-247 858.6 561 79.7
Gorai.011G187600 Gossypium raimondii HOM05D005803 ORTHO05D008090 4.6e-247 857.8 562 79.0
Potri.010G022100 Populus trichocarpa HOM05D005803 ORTHO05D008090 4.6e-247 857.8 561 78.8
Lalb_Chr18g0055621 Lupinus albus HOM05D005803 ORTHO05D008090 1.7e-246 855.9 561 78.3
Phvul.006G162900 Phaseolus vulgaris HOM05D005803 ORTHO05D008090 2.3e-246 855.5 561 77.7
Sc19g0005000 Simmondsia chinensis HOM05D005803 ORTHO05D008090 1.1e-245 853.2 562 77.6
Sopen01g029400 Solanum pennellii HOM05D005803 ORTHO05D008090 2.5e-245 852.0 562 76.2
Dinv44408 Davidia involucrata HOM05D005803 ORTHO05D008090 3.3e-245 851.7 561 77.7
Duzib151G0664 Durio zibethinus HOM05D005803 ORTHO05D008090 4.3e-245 851.3 561 79.1
Peaxi162Scf00386g00615 Petunia axillaris HOM05D005803 ORTHO05D008090 4.4e-242 841.3 562 76.2
Actinidia40241 Actinidia chinensis HOM05D005803 ORTHO05D008090 4.9e-241 837.8 557 77.7
CAN.G223.20 Capsicum annuum HOM05D005803 ORTHO05D008090 1.1e-240 836.6 562 76.0
Nn3g21354 Nelumbo nucifera HOM05D005803 ORTHO05D008090 4.1e-240 834.7 561 76.3
FAN07G1352 Fragaria x ananassa HOM05D005803 ORTHO05D008090 5.4e-240 834.3 565 77.5
FAN12G0977 Fragaria x ananassa HOM05D005803 ORTHO05D008090 5.4e-240 834.3 557 78.3
arahy.Tifrunner.gnm1.ann1.7QB25Q Arachis hypogaea HOM05D005803 ORTHO05D008090 6.0e-239 830.9 561 76.1
arahy.Tifrunner.gnm1.ann1.FSUI8I Arachis hypogaea HOM05D005803 ORTHO05D008090 6.0e-239 830.9 561 76.1
FAN12G3070 Fragaria x ananassa HOM05D005803 ORTHO05D008090 3.3e-237 825.1 560 77.5
Gohir.D10G168100 Gossypium hirsutum HOM05D005803 ORTHO05D008090 1.8e-235 819.3 562 76.7
Medtr2g019850 Medicago truncatula HOM05D005803 ORTHO05D008090 2.3e-235 818.9 561 80.6
THA.LOC104820247 Tarenaya hassleriana HOM05D005803 ORTHO05D008090 2.0e-234 815.8 561 74.9
Eucgr.B01277 Eucalyptus grandis HOM05D005803 ORTHO05D008090 4.4e-234 814.7 562 74.2
DCAR_027096 Daucus carota HOM05D005803 ORTHO05D008090 3.7e-233 811.6 575 74.1
TAR365G0996 Trochodendron aralioides HOM05D005803 ORTHO05D008090 3.7e-233 811.6 542 77.5
Rhsim04G0218200 Rhododendron simsii HOM05D005803 ORTHO05D008090 1.1e-232 810.1 612 70.6
Cpa.g.sc1214.2 Carica papaya HOM05D005803 ORTHO05D008090 2.4e-232 808.9 562 76.0
Atru.chr4.2785 Acer truncatum HOM05D005803 ORTHO05D008090 4.1e-232 808.1 515 80.2
Lsat_1_v5_gn_5_69681 Lactuca sativa HOM05D005803 ORTHO05D008090 2.1e-231 805.8 561 73.3
FAN22G2255 Fragaria x ananassa HOM05D005803 ORTHO05D008090 1.1e-229 800.0 546 77.5
FvH4_4g17530 Fragaria vesca HOM05D005803 ORTHO05D008090 8.1e-228 793.9 513 79.1
Cc03_g02160 Coffea canephora HOM05D005803 ORTHO05D008090 1.4e-227 793.1 560 73.0
EL10Ac3g06553 Beta vulgaris HOM05D005803 ORTHO05D008090 3.1e-227 792.0 561 71.5
Aa31LG5G20510 Aethionema arabicum HOM05D005803 ORTHO05D008090 5.2e-227 791.2 576 76.2
Aqoxy5G00678 Aquilegia oxysepala HOM05D005803 ORTHO05D008090 2.0e-226 789.3 539 74.4
MELO3C021349.2 Cucumis melo HOM05D005803 ORTHO05D008090 9.9e-226 786.9 648 67.3
MSTRG.3937 Avicennia marina HOM05D005803 ORTHO05D008090 8.4e-225 783.9 565 72.0
HanXRQChr13g0410111 Helianthus annuus HOM05D005803 ORTHO05D008090 7.1e-224 780.8 561 71.8
BcaB02g09144 Brassica carinata HOM05D005803 ORTHO05D008090 1.2e-223 780.0 561 72.2
A05p07190 Brassica napus HOM05D005803 ORTHO05D008090 1.2e-223 780.0 562 72.6
BraA05t19684Z Brassica rapa HOM05D005803 ORTHO05D008090 1.2e-223 780.0 562 72.6
Carub.0004s2114 Capsella rubella HOM05D005803 ORTHO05D008090 6.6e-222 774.2 561 72.4
COL.COLO4_13910 Corchorus olitorius HOM05D005803 ORTHO05D008090 1.9e-221 772.7 512 77.7
Sp4g21440 Schrenkiella parvula HOM05D005803 ORTHO05D008090 2.5e-221 772.3 561 71.7
AT2G39090 Arabidopsis thaliana HOM05D005803 ORTHO05D008090 5.6e-221 771.2 561 71.7
BcaC02g12039 Brassica carinata HOM05D005803 ORTHO05D008090 5.6e-221 771.2 561 72.4
Migut.G00189 Erythranthe guttata HOM05D005803 ORTHO05D008090 7.3e-221 770.8 566 70.1
C04p08600 Brassica napus HOM05D005803 ORTHO05D008090 1.4e-219 766.5 562 72.2
Lj6C671G13 Lonicera japonica HOM05D005803 ORTHO05D008090 1.4e-219 766.5 514 76.1
BolC4t22455H Brassica oleracea HOM05D005803 ORTHO05D008090 1.8e-219 766.1 561 72.2
Nitab4.5_0000644g0090 Nicotiana tabacum HOM05D005803 ORTHO05D008090 1.8e-219 766.1 576 70.7
HPP92_015179 Vanilla planifolia HOM05D005803 ORTHO05D008090 3.8e-217 758.4 561 69.7
CARHR133850 Cardamine hirsuta HOM05D005803 ORTHO05D008090 1.9e-216 756.1 562 70.5
Ah.13g074480 Amaranthus hybridus HOM05D005803 ORTHO05D008090 4.6e-215 751.5 552 70.5
Thhalv10017916m.g Eutrema salsugineum HOM05D005803 ORTHO05D008090 2.3e-214 749.2 532 73.1
ATR0706G085 Amborella trichopoda HOM05D005803 ORTHO05D008090 2.1e-212 742.7 562 66.7
PSO832G0201 Papaver somniferum HOM05D005803 ORTHO05D008090 2.8e-212 742.3 562 67.8
AL4G36390 Arabidopsis lyrata HOM05D005803 ORTHO05D008090 3.6e-212 741.9 561 70.4
PSO210G1989 Papaver somniferum HOM05D005803 ORTHO05D008090 1.3e-209 733.4 562 67.1
MBI19_g01944_MAGBIO Magnolia biondii HOM05D005803 ORTHO05D008090 1.0e-201 707.2 532 69.0
SGA_v2.0_scaffold57G20231 Striga asiatica HOM05D005803 ORTHO05D008090 1.2e-199 700.3 476 75.0
vmacro22476 Vaccinium macrocarpon HOM05D005803 ORTHO05D008090 1.1e-197 693.7 561 67.4
Hma1.2p1_0698F.1_g205440 Hydrangea macrophylla HOM05D005803 ORTHO05D008090 9.0e-187 657.5 393 85.0
unitig_26.g9058 Utricularia gibba HOM05D005803 ORTHO05D008090 1.5e-178 630.2 455 69.2
AUR62042651 Chenopodium quinoa HOM05D005803 ORTHO05D008090 3.3e-173 612.5 554 60.5
Os05g0149900 Oryza sativa ssp. japonica HOM05D005803 ORTHO05D008090 3.3e-173 612.5 433 70.9
Pp3c23_6980 Physcomitrium patens HOM05D005803 ORTHO05D008090 6.5e-169 598.2 562 55.7
Mapoly0073s0077 Marchantia polymorpha HOM05D005803 ORTHO05D008090 1.4e-166 590.5 563 55.4
SMO119G0467 Selaginella moellendorffii HOM05D005803 ORTHO05D008090 3.4e-157 559.3 569 52.5
AagrBONN_evm.TU.Sc2ySwM_228.1968 Anthoceros agrestis HOM05D005803 ORTHO05D008090 4.8e-156 555.4 563 52.8
AUR62043505 Chenopodium quinoa HOM05D005803 ORTHO05D008090 1.5e-152 543.9 382 73.0
CBR_g37168 Chara braunii HOM05D005803 ORTHO05D000048 8.0e-151 538.1 566 49.6
Nitab4.5_0000829g0230 Nicotiana tabacum HOM05D005803 ORTHO05D008090 1.0e-150 537.7 339 81.4
TPR.G1478 Trifolium pratense HOM05D005803 ORTHO05D008090 2.9e-140 503.1 306 85.9
BcaNung07183 Brassica carinata HOM05D005803 ORTHO05D008090 3.7e-140 502.7 526 56.8
CDE06G0920 Ceratophyllum demersum HOM05D005803 ORTHO05D008090 1.2e-130 471.1 349 70.5
ECA240G2219 Erigeron canadensis HOM05D005803 ORTHO05D008090 4.3e-120 436.0 340 63.5
Zm00001eb418180 Zea mays HOM05D005803 ORTHO05D008090 4.1e-115 419.5 356 58.1
TPR.G35525 Trifolium pratense HOM05D005803 ORTHO05D008090 3.8e-100 369.8 260 70.8
MCO16G459 Micromonas commoda HOM05D005803 ORTHO05D008090 4.3e-80 303.1 546 36.1
Oeu029260.1 Olea europaea HOM05D005803 ORTHO05D008090 1.1e-75 288.5 208 75.0
Oeu032270.1 Olea europaea HOM05D005803 ORTHO05D008090 3.0e-65 253.8 144 81.9
ECA240G4135 Erigeron canadensis HOM05D005803 ORTHO05D008090 1.5e-64 251.5 196 71.9
Solyc01g067490.4 Solanum lycopersicum HOM05D005803 ORTHO05D008090 4.8e-63 246.5 200 62.5
SEGI_31260 Sequoiadendron giganteum HOM05D005803 ORTHO05D008090 6.5e-60 236.1 180 60.6
Hma1.2p1_2251F.1_g318140 Hydrangea macrophylla HOM05D005803 ORTHO05D008090 4.1e-54 216.9 130 80.8
TPR.G29244 Trifolium pratense HOM05D005803 ORTHO05D008090 8.8e-41 172.6 161 59.0
BcaC07g41552 Brassica carinata HOM05D000238 ORTHO05D020090 1.5e-35 155.2 180 52.8
TPR.G29241 Trifolium pratense HOM05D005803 ORTHO05D008090 7.2e-35 152.9 90 77.8
BcaC09g48072 Brassica carinata HOM05D005803 ORTHO05D020090 4.7e-34 150.2 178 51.7
C06p17250 Brassica napus HOM05D005803 ORTHO05D020090 4.4e-32 143.7 158 54.4
BolC6t36924H Brassica oleracea HOM05D005803 ORTHO05D020090 4.4e-32 143.7 158 54.4
Hma1.2p1_0055F.1_g031500 Hydrangea macrophylla HOM05D005803 ORTHO05D008090 2.4e-30 137.9 90 73.3
C04p44010 Brassica napus HOM05D005803 ORTHO05D020090 7.8e-29 132.9 167 50.3
Hma1.2p1_2251F.1_g318130 Hydrangea macrophylla HOM05D005803 ORTHO05D008090 1.2e-24 119.0 129 52.7
SEGI_25333 Sequoiadendron giganteum HOM05D005803 ORTHO05D020090 1.7e-23 115.2 77 70.1
BcaC08g44302 Brassica carinata HOM05D005803 ORTHO05D020090 7.0e-22 109.8 58 93.1
AL92U10050 Arabidopsis lyrata HOM05D005803 ORTHO05D008090 1.6e-21 108.6 130 48.5
Atru.chr4.2782 Acer truncatum HOM05D005803 ORTHO05D008090 1.9e-19 101.7 87 65.5
Hma1.2p1_1012F.1_g247600 Hydrangea macrophylla HOM05D005803 ORTHO05D008090 2.6e-16 91.3 90 55.6
SEGI_29512 Sequoiadendron giganteum HOM05D005803 ORTHO05D008090 2.0e-13 81.6 71 56.3
THA.LOC104814565 Tarenaya hassleriana HOM05D003301 ORTHO05D003665 8.3e-07 59.7 304 23.7
Hund10083 Selenicereus undatus HOM05D003301 ORTHO05D003665 4.1e-06 57.4 283 22.3


User provided reference genes

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