Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.01G145800 Carya illinoinensis HOM05D004309 ORTHO05D005588 2.8e-123 445.3 224 100.0
Cfa015422 Carpinus fangiana HOM05D004309 ORTHO05D005588 1.5e-108 396.4 224 90.6
Hma1.2p1_0078F.1_g040370 Hydrangea macrophylla HOM05D004309 ORTHO05D005588 2.4e-106 389.0 216 87.5
Prupe.1G125100 Prunus persica HOM05D004309 ORTHO05D005588 4.1e-106 388.3 225 87.1
TAR633G1513 Trochodendron aralioides HOM05D004309 ORTHO05D005588 9.1e-106 387.1 220 85.9
Atru.chr4.2894 Acer truncatum HOM05D004309 ORTHO05D005588 1.6e-105 386.3 225 86.2
CSS0011476 Camellia sinensis var. sinensis HOM05D004309 ORTHO05D005588 2.0e-105 386.0 222 86.9
Sed0001785 Sechium edule HOM05D004309 ORTHO05D005588 2.0e-105 386.0 219 84.9
Actinidia00004 Actinidia chinensis HOM05D004309 ORTHO05D005588 7.7e-105 384.0 218 85.8
Dinv29733 Davidia involucrata HOM05D004309 ORTHO05D005588 7.7e-105 384.0 221 86.0
ClCG05G006230 Citrullus lanatus HOM05D004309 ORTHO05D005588 1.0e-104 383.6 219 84.9
Sabra10G0006000 Salix brachista HOM05D004309 ORTHO05D005588 1.0e-104 383.6 217 87.1
Sed0024380 Sechium edule HOM05D004309 ORTHO05D005588 5.0e-104 381.3 220 84.1
Manes.03G198200 Manihot esculenta HOM05D004309 ORTHO05D005588 6.5e-104 380.9 225 84.4
CsaV3_3G014840 Cucumis sativus L. HOM05D004309 ORTHO05D005588 1.9e-103 379.4 219 84.5
DCAR_023296 Daucus carota HOM05D004309 ORTHO05D005588 1.9e-103 379.4 223 84.3
GSVIVG01035117001 Vitis vinifera HOM05D004309 ORTHO05D005588 2.5e-103 379.0 218 85.8
PSO170G6503 Papaver somniferum HOM05D004309 ORTHO05D005588 3.2e-103 378.6 218 83.9
Duzib212G0876 Durio zibethinus HOM05D004309 ORTHO05D005588 4.2e-103 378.3 223 84.3
PSO407G0025 Papaver somniferum HOM05D004309 ORTHO05D005588 5.5e-103 377.9 218 83.9
PSO444G0002 Papaver somniferum HOM05D004309 ORTHO05D005588 5.5e-103 377.9 218 83.9
Potri.010G011000 Populus trichocarpa HOM05D004309 ORTHO05D005588 5.5e-103 377.9 217 86.6
DCAR_027056 Daucus carota HOM05D004309 ORTHO05D005588 7.2e-103 377.5 218 84.4
PGR031G0395 Punica granatum HOM05D004309 ORTHO05D005588 7.2e-103 377.5 221 84.2
FvH4_4g18580 Fragaria vesca HOM05D004309 ORTHO05D005588 1.6e-102 376.3 218 86.7
Aqoxy2G02913 Aquilegia oxysepala HOM05D004309 ORTHO05D005588 2.1e-102 375.9 221 83.7
SGA_v2.0_scaffold91G28010 Striga asiatica HOM05D004309 ORTHO05D005588 2.1e-102 375.9 218 84.4
Thecc.04G288300 Theobroma cacao HOM05D004309 ORTHO05D005588 2.1e-102 375.9 221 84.2
QL06p010180 Quercus lobata HOM05D004309 ORTHO05D005588 4.7e-102 374.8 220 85.9
RcHm_v2.0_Chr4g0423181 Rosa chinensis HOM05D004309 ORTHO05D005588 8.0e-102 374.0 218 86.2
Lj3A823G59 Lonicera japonica HOM05D004309 ORTHO05D005588 1.8e-101 372.9 217 85.3
CDE11G0079 Ceratophyllum demersum HOM05D004309 ORTHO05D005588 2.3e-101 372.5 217 83.4
Sc19g0005430 Simmondsia chinensis HOM05D004309 ORTHO05D005588 3.0e-101 372.1 218 83.9
CANSAT78G0198 Cannabis sativa HOM05D004309 ORTHO05D005588 6.8e-101 370.9 220 84.5
ATR0150G025 Amborella trichopoda HOM05D004309 ORTHO05D005588 2.0e-100 369.4 223 81.2
ECA246G0235 Erigeron canadensis HOM05D004309 ORTHO05D005588 3.4e-100 368.6 213 83.6
Nitab4.5_0000695g0040 Nicotiana tabacum HOM05D004309 ORTHO05D005588 5.7e-100 367.9 214 83.2
MELO3C006680.2 Cucumis melo HOM05D004309 ORTHO05D005588 7.5e-100 367.5 233 79.4
Nitab4.5_0006814g0040 Nicotiana tabacum HOM05D004309 ORTHO05D005588 7.5e-100 367.5 214 83.2
arahy.Tifrunner.gnm1.ann1.9V15EM Arachis hypogaea HOM05D004309 ORTHO05D005588 1.3e-99 366.7 224 80.8
Rhsim04G0225000 Rhododendron simsii HOM05D004309 ORTHO05D005588 1.7e-99 366.3 215 84.2
Eucgr.C01303 Eucalyptus grandis HOM05D004309 ORTHO05D005588 2.2e-99 365.9 217 82.5
CAN.G1639.2 Capsicum annuum HOM05D004309 ORTHO05D005588 2.8e-99 365.5 217 83.4
Gorai.002G028600 Gossypium raimondii HOM05D004309 ORTHO05D005588 3.7e-99 365.2 223 81.6
vmacro08183 Vaccinium macrocarpon HOM05D004309 ORTHO05D005588 4.8e-99 364.8 215 84.7
arahy.Tifrunner.gnm1.ann1.YC35GQ Arachis hypogaea HOM05D004309 ORTHO05D007726 8.3e-99 364.0 224 80.4
Gohir.D01G023490 Gossypium hirsutum HOM05D004309 ORTHO05D005588 8.3e-99 364.0 223 81.2
Lsat_1_v5_gn_3_24101 Lactuca sativa HOM05D004309 ORTHO05D005588 8.3e-99 364.0 213 84.0
Ciclev10005665m.g Citrus clementina HOM05D004309 ORTHO05D005588 1.1e-98 363.6 258 73.3
Migut.N00082 Erythranthe guttata HOM05D004309 ORTHO05D005588 1.1e-98 363.6 219 79.5
Lj4g0021722 Lotus japonicus HOM05D004309 ORTHO05D007726 1.1e-98 363.6 225 80.0
SalBow5G3240 Salvia bowleyana HOM05D004309 ORTHO05D005588 1.1e-98 363.6 219 79.0
Sp7g14390 Schrenkiella parvula HOM05D004309 ORTHO05D005588 1.1e-98 363.6 220 81.4
BcaC07g37940 Brassica carinata HOM05D004309 ORTHO05D005588 1.8e-98 362.8 220 80.9
HanXRQChr06g0173801 Helianthus annuus HOM05D004309 ORTHO05D005588 1.8e-98 362.8 213 83.1
BolC8t48324H Brassica oleracea HOM05D004309 ORTHO05D005588 2.4e-98 362.5 214 81.8
Sopen01g028230 Solanum pennellii HOM05D004309 ORTHO05D005588 2.4e-98 362.5 217 81.6
Gohir.A01G033033 Gossypium hirsutum HOM05D004309 ORTHO05D005588 4.1e-98 361.7 223 80.7
A08p12070 Brassica napus HOM05D004309 ORTHO05D005588 5.4e-98 361.3 214 81.3
BraA08t33198Z Brassica rapa HOM05D004309 ORTHO05D005588 5.4e-98 361.3 214 81.3
Carub.0007s2572 Capsella rubella HOM05D004309 ORTHO05D005588 5.4e-98 361.3 220 80.5
Solyc01g066480.3 Solanum lycopersicum HOM05D004309 ORTHO05D005588 7.0e-98 360.9 217 81.1
Thhalv10026185m.g Eutrema salsugineum HOM05D004309 ORTHO05D005588 2.0e-97 359.4 220 80.0
BcaB04g18344 Brassica carinata HOM05D004309 ORTHO05D005588 3.5e-97 358.6 213 81.2
AL7G39330 Arabidopsis lyrata HOM05D004309 ORTHO05D005588 4.5e-97 358.2 220 79.5
CARHR290520 Cardamine hirsuta HOM05D004309 ORTHO05D005588 1.0e-96 357.1 218 80.3
Cc03_g01580 Coffea canephora HOM05D004309 ORTHO05D005588 1.3e-96 356.7 222 78.8
Lalb_Chr07g0182331 Lupinus albus HOM05D004309 ORTHO05D005588 1.3e-96 356.7 217 80.2
Psat4g026320 Pisum sativum HOM05D004309 ORTHO05D005588 1.7e-96 356.3 217 78.8
THA.LOC104802581 Tarenaya hassleriana HOM05D004309 ORTHO05D005588 2.2e-96 355.9 218 80.3
AT4G15940 Arabidopsis thaliana HOM05D004309 ORTHO05D005588 3.8e-96 355.1 220 80.5
Phvul.003G106800 Phaseolus vulgaris HOM05D004309 ORTHO05D005588 5.0e-96 354.8 216 80.6
Glyma.07G245900 Glycine max HOM05D004309 ORTHO05D005588 6.5e-96 354.4 214 80.8
Glyma.17G028100 Glycine max HOM05D004309 ORTHO05D005588 6.5e-96 354.4 218 79.8
HPP92_010682 Vanilla planifolia HOM05D004309 ORTHO05D005588 8.5e-96 354.0 215 79.1
TPR.G3211 Trifolium pratense HOM05D004309 ORTHO05D005588 3.2e-95 352.1 223 77.1
unitig_749.g13387 Utricularia gibba HOM05D004309 ORTHO05D005588 5.5e-95 351.3 217 78.3
Hund24883 Selenicereus undatus HOM05D004309 ORTHO05D005588 2.7e-94 349.0 219 79.0
VMungo1215G2421 Vigna mungo HOM05D004309 ORTHO05D005588 2.7e-94 349.0 216 79.2
Oeu053993.1 Olea europaea HOM05D004309 ORTHO05D005588 1.0e-93 347.1 262 67.9
Medtr4g120230 Medicago truncatula HOM05D004309 ORTHO05D005588 5.7e-92 341.3 221 75.6
Nn3g21534 Nelumbo nucifera HOM05D004309 ORTHO05D005588 3.7e-91 338.6 221 78.3
MSTRG.24800 Avicennia marina HOM05D004309 ORTHO05D005588 1.4e-90 336.7 218 73.4
BcaB04g18345 Brassica carinata HOM05D004309 ORTHO05D005588 1.4e-90 336.7 218 76.1
SEGI_31265 Sequoiadendron giganteum HOM05D004309 ORTHO05D005588 4.1e-90 335.1 214 77.1
EL10Ac3g06636 Beta vulgaris HOM05D004309 ORTHO05D005588 1.2e-89 333.6 210 75.2
Thhalv10021471m.g Eutrema salsugineum HOM05D004309 ORTHO05D005588 1.6e-89 333.2 220 74.1
Aa31LG10G6200 Aethionema arabicum HOM05D004309 ORTHO05D005588 2.7e-89 332.4 268 65.3
Sp3g14970 Schrenkiella parvula HOM05D004309 ORTHO05D005588 5.9e-89 331.3 220 74.5
A08p12080 Brassica napus HOM05D004309 ORTHO05D005588 1.0e-88 330.5 220 75.0
BraA08t33199Z Brassica rapa HOM05D004309 ORTHO05D005588 1.0e-88 330.5 220 75.0
AL3G29630 Arabidopsis lyrata HOM05D004309 ORTHO05D005588 2.9e-88 328.9 222 73.9
Carub.0003s1643 Capsella rubella HOM05D004309 ORTHO05D005588 2.9e-88 328.9 220 73.2
BcaC09g48622 Brassica carinata HOM05D004309 ORTHO05D005588 5.0e-88 328.2 220 72.7
BolC1t04737H Brassica oleracea HOM05D004309 ORTHO05D005588 5.0e-88 328.2 220 72.7
Lj6A680G88 Lonicera japonica HOM05D004309 ORTHO05D005588 8.6e-88 327.4 218 74.8
C01p47650 Brassica napus HOM05D004309 ORTHO05D005588 1.1e-87 327.0 220 72.3
Zm00001eb063500 Zea mays HOM05D004309 ORTHO05D005588 1.5e-87 326.6 226 71.7
A01p37620 Brassica napus HOM05D004309 ORTHO05D005588 1.9e-87 326.2 218 72.5
Aa31LG8G3800 Aethionema arabicum HOM05D004309 ORTHO05D005588 3.3e-87 325.5 218 73.4
TWI09G0267 Tripterygium wilfordii HOM05D004309 ORTHO05D005588 4.3e-87 325.1 221 75.1
BraA01t03822Z Brassica rapa HOM05D004309 ORTHO05D005588 5.6e-87 324.7 218 72.0
Os03g0829000 Oryza sativa ssp. japonica HOM05D004309 ORTHO05D005588 7.3e-87 324.3 227 71.8
COL.COLO4_13828 Corchorus olitorius HOM05D005069 ORTHO05D006024 1.6e-86 323.2 189 84.1
Zm00001eb053490 Zea mays HOM05D004309 ORTHO05D005588 1.0e-85 320.5 226 69.9
AagrBONN_evm.TU.Sc2ySwM_344.4111 Anthoceros agrestis HOM05D004309 ORTHO05D005588 4.6e-81 305.1 211 70.1
CBR_g26355 Chara braunii HOM05D004309 ORTHO05D005588 1.6e-78 296.6 212 69.3
AUR62001364 Chenopodium quinoa HOM05D004309 ORTHO05D005588 2.1e-78 296.2 210 69.5
AUR62025637 Chenopodium quinoa HOM05D004309 ORTHO05D005588 2.3e-77 292.7 210 68.6
Pp3c9_26130 Physcomitrium patens HOM05D004309 ORTHO05D005588 1.2e-76 290.4 214 65.0
HPP92_010660 Vanilla planifolia HOM05D004309 ORTHO05D005588 1.2e-76 290.4 177 78.5
Mapoly0093s0048 Marchantia polymorpha HOM05D004309 ORTHO05D005588 1.5e-76 290.0 216 67.6
Ah.08g217630 Amaranthus hybridus HOM05D004309 ORTHO05D005588 2.6e-76 289.3 212 68.4
EL10Ac7g18188 Beta vulgaris HOM05D004309 ORTHO05D005588 2.6e-76 289.3 210 67.1
AUR62018079 Chenopodium quinoa HOM05D004309 ORTHO05D005588 3.9e-72 275.4 180 72.8
SMO347G0543 Selaginella moellendorffii HOM05D004309 ORTHO05D005588 2.7e-65 252.7 201 63.7
FAN07G2872 Fragaria x ananassa HOM05D004309 ORTHO05D005588 1.9e-63 246.5 141 85.8
FAN12G2807 Fragaria x ananassa HOM05D005069 ORTHO05D006024 8.4e-59 231.1 128 89.1
FAN12G1798 Fragaria x ananassa HOM05D004309 ORTHO05D005588 1.5e-55 220.3 122 88.5
Peaxi162Scf00065g01425 Petunia axillaris HOM05D004309 ORTHO05D005588 5.6e-55 218.4 125 85.6
PRCOL_00005024 Prasinoderma coloniale HOM05D004309 ORTHO05D005588 5.6e-55 218.4 230 50.4
Eucgr.C01444 Eucalyptus grandis HOM05D004309 ORTHO05D005588 9.6e-55 217.6 125 82.4
Cpa.g.sc50.169 Carica papaya HOM05D004309 ORTHO05D005588 8.1e-54 214.5 131 80.9
Duzib151G0762 Durio zibethinus HOM05D004309 ORTHO05D005588 3.5e-49 199.1 155 67.1
Sc26g0002580 Simmondsia chinensis HOM05D004309 ORTHO05D005588 4.9e-43 178.7 124 69.4
QL06p010208 Quercus lobata HOM05D004309 ORTHO05D005588 8.4e-43 177.9 130 73.1
Thhalv10026938m.g Eutrema salsugineum HOM05D004309 ORTHO05D005588 4.2e-42 175.6 112 75.9
Hma1.2p1_0078F.1_g040630 Hydrangea macrophylla HOM05D004309 ORTHO05D005588 1.3e-40 170.6 92 89.1
AT3G16700 Arabidopsis thaliana HOM05D004309 ORTHO05D005588 7.4e-39 164.9 108 75.9
Ciclev10006277m.g Citrus clementina HOM05D004309 ORTHO05D005588 9.9e-36 154.5 91 81.3
Ciclev10006783m.g Citrus clementina HOM05D004309 ORTHO05D005588 1.0e-32 144.4 95 74.7
CARHR091950 Cardamine hirsuta HOM05D004309 ORTHO05D005588 3.0e-32 142.9 90 72.2
Cfa022490 Carpinus fangiana HOM05D004309 ORTHO05D005588 3.9e-32 142.5 165 46.7
Haze_27427 Corylus avellana HOM05D004309 ORTHO05D005588 1.1e-29 134.4 202 40.6
SMO353G0001 Selaginella moellendorffii HOM05D004309 ORTHO05D005588 2.6e-28 129.8 219 36.1
ATR0326G053 Amborella trichopoda HOM05D004309 ORTHO05D005588 7.6e-28 128.3 78 79.5
Pp3c6_20080 Physcomitrium patens HOM05D004309 ORTHO05D005588 1.3e-27 127.5 219 35.2
Haze_27486 Corylus avellana HOM05D004309 ORTHO05D005588 2.9e-27 126.3 187 39.6
SEGI_02276 Sequoiadendron giganteum HOM05D004309 ORTHO05D005588 2.9e-27 126.3 189 38.1
Os03g0421700 Oryza sativa ssp. japonica HOM05D004309 ORTHO05D005588 1.1e-26 124.4 94 67.0
Cre12.g549450 Chlamydomonas reinhardtii HOM05D004309 ORTHO05D005588 7.1e-26 121.7 200 40.0
RcHm_v2.0_Chr4g0423191 Rosa chinensis HOM05D004309 ORTHO05D005588 1.8e-24 117.1 75 78.7
Prupe.1G124800 Prunus persica HOM05D004309 ORTHO05D005588 5.1e-24 115.5 65 87.7
AUR62024358 Chenopodium quinoa HOM05D002697 ORTHO05D003087 2.5e-23 113.2 71 71.8
Pp3s34_290 Physcomitrium patens HOM05D000879 ORTHO05D000265 5.7e-23 112.1 206 36.4
Peaxi162Scf00454g00328 Petunia axillaris HOM05D004309 ORTHO05D005588 1.6e-22 110.5 66 77.3
Actinidia27753 Actinidia chinensis HOM05D004309 ORTHO05D005588 2.8e-22 109.8 88 63.6
MCO13G238 Micromonas commoda HOM05D004309 ORTHO05D005588 3.1e-21 106.3 194 37.1
Lsat_1_v5_gn_3_26221 Lactuca sativa HOM05D004309 ORTHO05D005588 3.4e-20 102.8 83 63.9
PRCOL_00000256 Prasinoderma coloniale HOM05D004309 ORTHO05D005588 4.5e-20 102.4 204 35.3
GSVIVG01010688001 Vitis vinifera HOM05D004309 ORTHO05D005588 1.0e-19 101.3 63 74.6
BcaC01g03621 Brassica carinata HOM05D004309 ORTHO05D005588 1.4e-18 97.4 63 76.2
AagrBONN_evm.TU.Sc2ySwM_368.471 Anthoceros agrestis HOM05D004309 ORTHO05D005588 3.2e-18 96.3 170 33.5
Peaxi162Scf00267g00046 Petunia axillaris HOM05D004309 ORTHO05D005588 2.1e-17 93.6 51 84.3
MD04G1020300 Malus domestica HOM05D004309 ORTHO05D005588 7.9e-17 91.7 59 76.3
Lsat_1_v5_gn_8_151620 Lactuca sativa HOM05D004309 ORTHO05D012139 2.3e-16 90.1 53 81.1
Zm00001eb065520 Zea mays HOM05D002744 ORTHO05D008989 8.7e-16 88.2 69 63.8
Zm00001eb419610 Zea mays HOM05D004309 ORTHO05D005588 4.8e-14 82.4 68 60.3
Cpa.g.sc50.168 Carica papaya HOM05D004309 ORTHO05D005588 1.8e-13 80.5 50 76.0
Zm00001eb097870 Zea mays HOM05D004309 ORTHO05D026220 6.5e-11 72.0 68 54.4
BolC3t17332H Brassica oleracea HOM05D004309 ORTHO05D005588 1.1e-10 71.2 92 50.0
Zm00001eb085600 Zea mays HOM05D001297 ORTHO05D001135 1.1e-10 71.2 65 55.4
C03p50400 Brassica napus HOM05D004309 ORTHO05D005588 1.4e-10 70.9 57 64.9
Zm00001eb194540 Zea mays HOM05D004309 ORTHO05D026220 1.4e-10 70.9 64 56.2
Zm00001eb423340 Zea mays HOM05D004309 ORTHO05D026220 3.2e-10 69.7 59 59.3
Zm00001eb282740 Zea mays HOM05D004309 ORTHO05D005588 4.2e-10 69.3 66 56.1
Zm00001eb024340 Zea mays HOM05D004309 ORTHO05D026220 1.2e-09 67.8 57 59.6
RcHm_v2.0_Chr0c32g0501491 Rosa chinensis HOM05D004309 ORTHO05D005588 8.8e-08 61.6 39 76.9
Zm00001eb170420 Zea mays HOM05D004309 ORTHO05D026220 2.8e-06 56.6 48 58.3


User provided reference genes

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