Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.01G145000 Carya illinoinensis HOM05D005806 ORTHO05D007119 2.1e-235 818.9 511 100.0
Haze_01151 Corylus avellana HOM05D005806 ORTHO05D007119 2.9e-163 579.3 469 75.3
Cfa015433 Carpinus fangiana HOM05D005806 ORTHO05D007119 5.4e-154 548.5 517 69.4
QL06p010760 Quercus lobata HOM05D005806 ORTHO05D007119 5.2e-149 531.9 520 67.5
Manes.03G199200 Manihot esculenta HOM05D005806 ORTHO05D007119 6.6e-128 461.8 472 64.6
Manes.15G010100 Manihot esculenta HOM05D005806 ORTHO05D007119 1.5e-127 460.7 470 63.2
TWI09G1342 Tripterygium wilfordii HOM05D005806 ORTHO05D007119 2.9e-123 446.4 470 59.4
TWI73G0620 Tripterygium wilfordii HOM05D005806 ORTHO05D007119 7.4e-119 431.8 473 58.8
ClCG05G006280 Citrullus lanatus HOM05D005806 ORTHO05D007119 1.6e-118 430.6 520 51.9
TAR365G0831 Trochodendron aralioides HOM05D005806 ORTHO05D007119 8.1e-118 428.3 530 54.3
TAR365G0056 Trochodendron aralioides HOM05D005806 ORTHO05D007119 6.9e-117 425.2 530 53.8
Duzib212G0552 Durio zibethinus HOM05D005806 ORTHO05D007119 5.8e-116 422.2 474 57.4
Duzib151G0580 Durio zibethinus HOM05D005806 ORTHO05D007119 7.6e-116 421.8 473 57.1
Thecc.04G290100 Theobroma cacao HOM05D005806 ORTHO05D007119 1.1e-114 417.9 472 57.2
COL.COLO4_13808 Corchorus olitorius HOM05D005806 ORTHO05D007119 2.4e-114 416.8 488 58.8
Ciclev10004804m.g Citrus clementina HOM05D005806 ORTHO05D007119 2.1e-113 413.7 477 58.5
Cpa.g.sc50.151 Carica papaya HOM05D005806 ORTHO05D007119 6.0e-113 412.1 472 61.0
Prupe.1G130400 Prunus persica HOM05D005806 ORTHO05D007119 5.1e-112 409.1 486 57.6
CSS0038808 Camellia sinensis var. sinensis HOM05D005806 ORTHO05D007119 8.7e-112 408.3 467 60.4
CSS0004144 Camellia sinensis var. sinensis HOM05D005806 ORTHO05D007119 2.5e-111 406.8 467 60.4
CSS0028282 Camellia sinensis var. sinensis HOM05D005806 ORTHO05D007119 4.3e-111 406.0 479 55.9
MD16G1163000 Malus domestica HOM05D005806 ORTHO05D007119 4.3e-111 406.0 480 53.8
Atru.chr4.2914 Acer truncatum HOM05D005806 ORTHO05D007119 5.6e-111 405.6 469 54.4
Sed0007282 Sechium edule HOM05D005806 ORTHO05D007119 1.3e-110 404.4 475 58.5
RcHm_v2.0_Chr4g0423561 Rosa chinensis HOM05D005806 ORTHO05D007119 1.6e-110 404.1 480 59.2
Eucgr.B01574 Eucalyptus grandis HOM05D005806 ORTHO05D007119 8.2e-110 401.7 480 56.5
GSVIVG01035100001 Vitis vinifera HOM05D005806 ORTHO05D007119 8.2e-110 401.7 461 57.9
Sabra10G0005700 Salix brachista HOM05D005806 ORTHO05D007119 7.6e-108 395.2 472 55.5
Potri.010G007000 Populus trichocarpa HOM05D005806 ORTHO05D007119 2.9e-107 393.3 471 58.0
MELO3C006687.2 Cucumis melo HOM05D005806 ORTHO05D007119 1.4e-106 391.0 458 58.5
Gorai.011G193400 Gossypium raimondii HOM05D005806 ORTHO05D007119 2.1e-105 387.1 478 54.2
THA.LOC104802587 Tarenaya hassleriana HOM05D005806 ORTHO05D007119 6.0e-105 385.6 495 54.3
CARHR092010 Cardamine hirsuta HOM05D005806 ORTHO05D007119 2.3e-104 383.6 469 52.7
arahy.Tifrunner.gnm1.ann1.TZ6N57 Arachis hypogaea HOM05D005806 ORTHO05D007119 6.7e-104 382.1 480 51.5
Hund20516 Selenicereus undatus HOM05D005806 ORTHO05D007119 1.1e-103 381.3 472 53.0
Nn3g21558 Nelumbo nucifera HOM05D005806 ORTHO05D007119 2.5e-103 380.2 469 56.9
EL10Ac3g06659 Beta vulgaris HOM05D005806 ORTHO05D007119 5.7e-103 379.0 488 51.6
Lj3A825T23 Lonicera japonica HOM05D005806 ORTHO05D007119 1.4e-101 374.4 486 54.5
Gohir.D10G172900 Gossypium hirsutum HOM05D005806 ORTHO05D007119 2.4e-101 373.6 478 57.3
DCAR_002485 Daucus carota HOM05D005806 ORTHO05D007119 1.5e-100 370.9 467 49.3
Dinv44345 Davidia involucrata HOM05D005806 ORTHO05D007119 5.9e-100 369.0 464 54.1
AT3G16760 Arabidopsis thaliana HOM05D005806 ORTHO05D007119 1.0e-99 368.2 474 50.4
FAN12G2548 Fragaria x ananassa HOM05D005806 ORTHO05D007119 1.0e-99 368.2 477 52.8
Carub.0003s1647 Capsella rubella HOM05D005806 ORTHO05D007119 5.0e-99 365.9 474 50.0
FvH4_4g18770 Fragaria vesca HOM05D005806 ORTHO05D007119 6.5e-99 365.5 477 52.6
FAN12G3921 Fragaria x ananassa HOM05D005806 ORTHO05D007119 6.5e-99 365.5 477 52.6
Nn4g25745 Nelumbo nucifera HOM05D005806 ORTHO05D007119 1.4e-98 364.4 480 49.8
Sp3g15010 Schrenkiella parvula HOM05D005806 ORTHO05D007119 1.4e-98 364.4 477 49.1
FAN07G1609 Fragaria x ananassa HOM05D005806 ORTHO05D007119 1.9e-98 364.0 476 52.5
Glyma.07G244900 Glycine max HOM05D005806 ORTHO05D007119 4.2e-98 362.8 461 54.9
Nitab4.5_0012392g0010 Nicotiana tabacum HOM05D005806 ORTHO05D007119 4.2e-98 362.8 496 49.6
Nitab4.5_0002215g0010 Nicotiana tabacum HOM05D005806 ORTHO05D007119 5.5e-98 362.5 489 51.3
VMungo1215G2854 Vigna mungo HOM05D005806 ORTHO05D007119 5.5e-98 362.5 462 51.5
Phvul.003G107800 Phaseolus vulgaris HOM05D005806 ORTHO05D007119 1.6e-97 360.9 460 57.8
PGR031G2493 Punica granatum HOM05D005806 ORTHO05D007119 1.6e-97 360.9 473 57.1
PGSC0003DMG400016813 Solanum tuberosum HOM05D005806 ORTHO05D007119 2.1e-97 360.5 478 51.5
Ah.13g074780 Amaranthus hybridus HOM05D005806 ORTHO05D007119 4.6e-97 359.4 492 48.4
Sc13g0003160 Simmondsia chinensis HOM05D005806 ORTHO05D007119 6.1e-97 359.0 414 54.8
Solyc01g066050.3 Solanum lycopersicum HOM05D005806 ORTHO05D007119 2.3e-96 357.1 504 47.8
Sopen01g027600 Solanum pennellii HOM05D005806 ORTHO05D007119 3.9e-96 356.3 504 47.8
Glyma.17G028900 Glycine max HOM05D005806 ORTHO05D007119 1.7e-94 350.9 474 53.4
CANSAT78G0145 Cannabis sativa HOM05D005806 ORTHO05D007119 2.8e-94 350.1 481 54.3
MBI18_g21793_MAGBIO Magnolia biondii HOM05D005806 ORTHO05D007119 4.8e-94 349.4 464 56.7
CsaV3_3G014910 Cucumis sativus L. HOM05D005806 ORTHO05D007119 1.4e-93 347.8 403 54.3
Aqoxy5G00792 Aquilegia oxysepala HOM05D005806 ORTHO05D007119 2.4e-93 347.1 482 47.5
Gohir.A10G166900 Gossypium hirsutum HOM05D005806 ORTHO05D007119 6.9e-93 345.5 485 54.8
Actinidia40301 Actinidia chinensis HOM05D005806 ORTHO05D007119 1.5e-92 344.4 396 55.6
vmacro23238 Vaccinium macrocarpon HOM05D005806 ORTHO05D007119 7.7e-92 342.0 566 41.5
Aa31LG8G3830 Aethionema arabicum HOM05D005806 ORTHO05D007119 1.3e-91 341.3 476 48.5
Thhalv10020624m.g Eutrema salsugineum HOM05D005806 ORTHO05D007119 1.7e-91 340.9 469 48.8
FAN17G0801 Fragaria x ananassa HOM05D005806 ORTHO05D007119 1.7e-91 340.9 476 51.1
AUR62018055 Chenopodium quinoa HOM05D005806 ORTHO05D007119 2.2e-91 340.5 477 47.6
Ca_21476_v3 Cicer arietinum L. HOM05D005806 ORTHO05D007119 2.2e-91 340.5 464 50.9
Cc03_g01460 Coffea canephora HOM05D005806 ORTHO05D007119 1.4e-90 337.8 478 47.7
HanXRQChr03g0084151 Helianthus annuus HOM05D005806 ORTHO05D007119 3.2e-90 336.7 522 44.6
Lsat_1_v5_gn_6_78121 Lactuca sativa HOM05D005806 ORTHO05D007119 3.2e-90 336.7 495 46.1
CAN.G14.19 Capsicum annuum HOM05D005806 ORTHO05D007119 5.5e-90 335.9 476 53.4
Oeu054004.1 Olea europaea HOM05D005806 ORTHO05D007119 6.1e-89 332.4 458 55.2
BolC1t04724H Brassica oleracea HOM05D005806 ORTHO05D007119 5.1e-88 329.3 464 48.3
MSTRG.10119 Avicennia marina HOM05D005806 ORTHO05D007119 1.5e-87 327.8 471 54.4
C01p47550 Brassica napus HOM05D005806 ORTHO05D007119 1.3e-86 324.7 467 48.0
Lj4g0013254 Lotus japonicus HOM05D005806 ORTHO05D007119 1.3e-86 324.7 472 54.7
BcaC09g48634 Brassica carinata HOM05D005806 ORTHO05D007119 5.3e-85 319.3 463 51.4
Lalb_Chr07g0182271 Lupinus albus HOM05D005806 ORTHO05D007119 1.2e-84 318.2 469 53.7
BraA01t03813Z Brassica rapa HOM05D005806 ORTHO05D007119 3.4e-84 316.6 465 50.8
Medtr4g120360 Medicago truncatula HOM05D005806 ORTHO05D007119 1.7e-83 314.3 475 47.2
Oeu006424.1 Olea europaea HOM05D005806 ORTHO05D007119 1.7e-83 314.3 460 53.7
Peaxi162Scf00065g01121 Petunia axillaris HOM05D005806 ORTHO05D007119 6.1e-81 305.8 541 45.5
PSO832G4515 Papaver somniferum HOM05D005806 ORTHO05D007119 6.7e-80 302.4 461 50.3
PSO210G6439 Papaver somniferum HOM05D005806 ORTHO05D007119 4.4e-79 299.7 461 49.9
A01p37530 Brassica napus HOM05D005806 ORTHO05D007119 5.7e-79 299.3 464 49.1
ECA240G3979 Erigeron canadensis HOM05D005806 ORTHO05D007119 1.3e-78 298.1 437 48.3
SGA_v2.0_scaffold91G28032 Striga asiatica HOM05D005806 ORTHO05D007119 6.3e-78 295.8 464 46.1
Psat4g025560 Pisum sativum HOM05D005806 ORTHO05D007119 2.7e-73 280.4 469 45.8
TAR362G1179 Trochodendron aralioides HOM05D005806 ORTHO05D007119 2.0e-71 274.2 338 58.3
Migut.N00070 Erythranthe guttata HOM05D005806 ORTHO05D007119 4.4e-71 273.1 478 43.9
TAR633G1904 Trochodendron aralioides HOM05D005806 ORTHO05D007119 4.4e-71 273.1 297 53.2
SalBow5G0238 Salvia bowleyana HOM05D005806 ORTHO05D007119 7.0e-69 265.8 528 43.9
Dinv29717 Davidia involucrata HOM05D005806 ORTHO05D007119 5.9e-68 262.7 291 62.5
HPP92_002231 Vanilla planifolia HOM05D005806 ORTHO05D007119 6.1e-65 252.7 450 42.0
arahy.Tifrunner.gnm1.ann1.T7VR84 Arachis hypogaea HOM05D005806 ORTHO05D007119 3.4e-63 246.9 305 52.1
AUR62015254 Chenopodium quinoa HOM05D005806 ORTHO05D007119 2.2e-62 244.2 297 48.5
CDE12G0749 Ceratophyllum demersum HOM05D005806 ORTHO05D007119 2.7e-60 237.3 489 40.7
Os03g0340700 Oryza sativa ssp. japonica HOM05D005806 ORTHO05D007119 7.2e-58 229.2 473 38.9
MD13G1163500 Malus domestica HOM05D005806 ORTHO05D007119 6.1e-57 226.1 296 47.6
SEGI_25850 Sequoiadendron giganteum HOM05D005806 ORTHO05D007119 2.8e-54 217.2 533 34.5
Zm00001eb016320 Zea mays HOM05D005806 ORTHO05D007119 3.1e-53 213.8 489 42.3
Lalb_Chr13g0298181 Lupinus albus HOM05D005806 ORTHO05D007119 2.3e-51 207.6 240 60.8
CDE01G0725 Ceratophyllum demersum HOM05D005806 ORTHO05D007119 7.3e-50 202.6 464 39.4
AL3G29680 Arabidopsis lyrata HOM05D005806 ORTHO05D007119 2.8e-49 200.7 247 52.2
Rhsim04G0227400 Rhododendron simsii HOM05D005806 ORTHO05D007119 2.7e-44 184.1 390 35.9
unitig_699.g19987 Utricularia gibba HOM05D005806 ORTHO05D007119 8.0e-41 172.6 469 40.9
HanXRQChr13g0413981 Helianthus annuus HOM05D005806 ORTHO05D007119 4.0e-40 170.2 151 60.9
Dinv29718 Davidia involucrata HOM05D000037 ORTHO05D000150 3.4e-39 167.2 141 66.7
TAR633G1627 Trochodendron aralioides HOM05D005806 ORTHO05D007119 6.8e-32 142.9 126 62.7
CSS0010946 Camellia sinensis var. sinensis HOM05D005806 ORTHO05D007119 1.5e-26 125.2 72 83.3
SMO334G0099 Selaginella moellendorffii HOM05D005806 ORTHO05D007119 7.3e-26 122.9 321 34.3
AagrBONN_evm.TU.Sc2ySwM_228.3483 Anthoceros agrestis HOM05D005806 ORTHO05D007119 2.8e-25 120.9 228 46.5
CSS0023833 Camellia sinensis var. sinensis HOM05D005806 ORTHO05D007119 8.1e-25 119.4 72 81.9
TAR362G0821 Trochodendron aralioides HOM05D005806 ORTHO05D007119 3.4e-23 114.0 107 62.6
AUR62015253 Chenopodium quinoa HOM05D005806 ORTHO05D007119 1.3e-22 112.1 110 59.1
Pp3c4_12130 Physcomitrium patens HOM05D005806 ORTHO05D007119 3.9e-19 100.5 86 58.1
Pp3c12_16600 Physcomitrium patens HOM05D005806 ORTHO05D007119 2.1e-17 94.7 172 36.0
HPP92_002153 Vanilla planifolia HOM05D005806 ORTHO05D007119 1.4e-16 92.0 96 50.0
SGA_v2.0_scaffold119G32699 Striga asiatica HOM05D005806 ORTHO05D007119 9.0e-16 89.4 72 62.5
FvH4_5g32480 Fragaria vesca HOM05D005806 ORTHO05D007119 1.2e-15 89.0 96 57.3
CBR_g4056 Chara braunii HOM05D005806 ORTHO05D007119 1.7e-14 85.1 107 47.7
Mapoly0005s0119 Marchantia polymorpha HOM05D005806 ORTHO05D007119 1.0e-11 75.9 463 25.7
CBR_g31779 Chara braunii HOM05D000019 ORTHO05D000002 6.6e-11 73.2 84 38.1
CBR_g39021 Chara braunii HOM05D000003 ORTHO05D000004 4.8e-09 67.0 85 34.1
Nn2g15616 Nelumbo nucifera HOM05D005806 ORTHO05D007119 3.4e-07 60.8 49 63.3


User provided reference genes

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