Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.01G133100 Carya illinoinensis HOM05D005991 ORTHO05D007408 1.3e-106 389.8 211 100.0
Haze_00826 Corylus avellana HOM05D005991 ORTHO05D007408 3.5e-75 285.4 192 82.3
Cfa015696 Carpinus fangiana HOM05D005991 ORTHO05D007408 6.0e-75 284.6 192 81.8
Manes.03G209000 Manihot esculenta HOM05D005991 ORTHO05D007408 4.6e-67 258.5 186 78.5
Dinv05101 Davidia involucrata HOM05D005991 ORTHO05D007408 1.9e-65 253.1 187 78.1
Lalb_Chr13g0298761 Lupinus albus HOM05D005991 ORTHO05D007408 1.9e-65 253.1 198 74.2
MBI18_g36460_MAGBIO Magnolia biondii HOM05D005991 ORTHO05D007408 9.6e-65 250.8 187 74.9
PGR004G0142 Punica granatum HOM05D005991 ORTHO05D007408 1.6e-64 250.0 196 71.9
CsaV3_6G000060 Cucumis sativus L. HOM05D005991 ORTHO05D007408 3.6e-64 248.8 194 72.7
Psat0s2692g0080 Pisum sativum HOM05D005991 ORTHO05D007408 3.6e-64 248.8 197 72.1
ClCG06G004330 Citrullus lanatus HOM05D005991 ORTHO05D007408 4.8e-64 248.4 194 72.2
MELO3C021248.2 Cucumis melo HOM05D005991 ORTHO05D007408 6.2e-64 248.1 194 72.2
Eucgr.H04085 Eucalyptus grandis HOM05D005991 ORTHO05D007408 6.2e-64 248.1 198 71.7
Lj4g0017646 Lotus japonicus HOM05D005991 ORTHO05D007408 2.4e-63 246.1 191 73.3
TAR633G0953 Trochodendron aralioides HOM05D005991 ORTHO05D007408 3.1e-63 245.7 198 73.7
CSS0003210 Camellia sinensis var. sinensis HOM05D005991 ORTHO05D007408 5.3e-63 245.0 188 76.1
Medtr4g123060 Medicago truncatula HOM05D005991 ORTHO05D007408 9.0e-63 244.2 194 72.2
QL06p013384 Quercus lobata HOM05D005991 ORTHO05D007408 2.0e-62 243.0 202 73.3
Cpa.g.sc146.66 Carica papaya HOM05D005991 ORTHO05D007408 3.4e-62 242.3 183 74.9
Glyma.07G232800 Glycine max HOM05D005991 ORTHO05D007408 1.7e-61 240.0 199 72.9
Phvul.003G118700 Phaseolus vulgaris HOM05D005991 ORTHO05D007408 2.9e-61 239.2 185 74.6
Rhsim02G0001600 Rhododendron simsii HOM05D005991 ORTHO05D007408 2.9e-61 239.2 184 73.9
Potri.010G151300 Populus trichocarpa HOM05D005991 ORTHO05D007408 8.4e-61 237.7 195 72.3
GSVIVG01017637001 Vitis vinifera HOM05D005991 ORTHO05D007408 8.4e-61 237.7 187 74.9
TWI53G1476 Tripterygium wilfordii HOM05D005991 ORTHO05D007408 1.1e-60 237.3 183 74.9
Actinidia18486 Actinidia chinensis HOM05D005991 ORTHO05D007408 1.9e-60 236.5 186 73.1
Glyma.17G037800 Glycine max HOM05D005991 ORTHO05D007408 3.2e-60 235.7 185 76.2
Sc23g0006090 Simmondsia chinensis HOM05D005991 ORTHO05D007408 3.2e-60 235.7 184 72.3
MSTRG.22639 Avicennia marina HOM05D005991 ORTHO05D007408 5.4e-60 235.0 203 69.0
vmacro19301 Vaccinium macrocarpon HOM05D005991 ORTHO05D007408 5.4e-60 235.0 184 71.7
TWI09G0093 Tripterygium wilfordii HOM05D005991 ORTHO05D007408 9.3e-60 234.2 183 73.8
Ca_21401_v3 Cicer arietinum L. HOM05D005991 ORTHO05D007408 1.6e-59 233.4 183 70.5
Nn3g21864 Nelumbo nucifera HOM05D005991 ORTHO05D007408 1.6e-59 233.4 185 72.4
Actinidia28298 Actinidia chinensis HOM05D005991 ORTHO05D007408 2.1e-59 233.0 185 73.0
TPR.G12610 Trifolium pratense HOM05D005991 ORTHO05D007408 2.1e-59 233.0 186 71.0
Atru.chr4.3094 Acer truncatum HOM05D005991 ORTHO05D007408 2.7e-59 232.6 189 74.1
Oeu009727.1 Olea europaea HOM05D005991 ORTHO05D007408 3.5e-59 232.3 199 70.4
Thecc.04G307900 Theobroma cacao HOM05D005991 ORTHO05D007408 3.5e-59 232.3 179 74.3
RcHm_v2.0_Chr4g0426321 Rosa chinensis HOM05D005991 ORTHO05D007408 4.6e-59 231.9 209 68.4
TWI73G0156 Tripterygium wilfordii HOM05D005991 ORTHO05D007408 6.0e-59 231.5 183 73.8
FvH4_4g20890 Fragaria vesca HOM05D005991 ORTHO05D007408 7.9e-59 231.1 209 67.9
FAN12G0391 Fragaria x ananassa HOM05D005991 ORTHO05D007408 7.9e-59 231.1 209 67.9
arahy.Tifrunner.gnm1.ann1.ELD4MI Arachis hypogaea HOM05D005991 ORTHO05D007408 1.8e-58 229.9 195 71.3
Duzib151G0057 Durio zibethinus HOM05D005991 ORTHO05D007408 1.8e-58 229.9 184 70.7
DCAR_019078 Daucus carota HOM05D005991 ORTHO05D007408 2.3e-58 229.6 184 72.3
FAN17G2933 Fragaria x ananassa HOM05D005991 ORTHO05D007408 2.3e-58 229.6 190 72.1
THA.LOC104827106 Tarenaya hassleriana HOM05D005991 ORTHO05D007408 3.0e-58 229.2 185 68.6
Migut.I00898 Erythranthe guttata HOM05D005991 ORTHO05D007408 5.1e-58 228.4 198 67.7
Sed0009947 Sechium edule HOM05D005991 ORTHO05D007408 5.1e-58 228.4 197 67.5
TAR362G0621 Trochodendron aralioides HOM05D005991 ORTHO05D007408 5.1e-58 228.4 186 73.7
SGA_v2.0_scaffold66G22528 Striga asiatica HOM05D002451 ORTHO05D005601 6.7e-58 228.0 185 71.4
Ciclev10005452m.g Citrus clementina HOM05D005991 ORTHO05D007408 8.7e-58 227.6 189 72.5
FAN07G2713 Fragaria x ananassa HOM05D005991 ORTHO05D007408 8.7e-58 227.6 209 67.0
Os01g0328500 Oryza sativa ssp. japonica HOM05D005991 ORTHO05D007408 1.1e-57 227.3 184 69.0
Lj9A696T49 Lonicera japonica HOM05D005991 ORTHO05D007408 1.5e-57 226.9 198 66.2
Aqoxy7G00454 Aquilegia oxysepala HOM05D005991 ORTHO05D007408 4.3e-57 225.3 188 71.3
arahy.Tifrunner.gnm1.ann1.5JMV2K Arachis hypogaea HOM05D005991 ORTHO05D007408 1.3e-56 223.8 184 72.3
VMungo1215G0582 Vigna mungo HOM05D005991 ORTHO05D007408 1.3e-56 223.8 184 70.7
MD13G1147500 Malus domestica HOM05D005991 ORTHO05D007408 2.8e-56 222.6 211 64.5
COL.COLO4_34551 Corchorus olitorius HOM05D005991 ORTHO05D007408 8.1e-56 221.1 161 78.3
EL10Ac2g02410 Beta vulgaris HOM05D005991 ORTHO05D007408 1.4e-55 220.3 195 67.7
Zm00001eb340570 Zea mays HOM05D005991 ORTHO05D007408 5.3e-55 218.4 191 65.4
Gohir.A02G056400 Gossypium hirsutum HOM05D005991 ORTHO05D007408 6.9e-55 218.0 205 62.9
Aa31LG11G8380 Aethionema arabicum HOM05D005991 ORTHO05D007408 9.0e-55 217.6 196 64.8
Prupe.1G111000 Prunus persica HOM05D005991 ORTHO05D007408 9.0e-55 217.6 190 68.4
Gohir.D02G061600 Gossypium hirsutum HOM05D005991 ORTHO05D007408 1.5e-54 216.9 205 62.4
Gorai.005G069300 Gossypium raimondii HOM05D005991 ORTHO05D007408 1.5e-54 216.9 205 62.4
Zm00001eb131050 Zea mays HOM05D005991 ORTHO05D007408 3.4e-54 215.7 201 62.2
CANSAT78G1707 Cannabis sativa HOM05D005991 ORTHO05D007408 2.9e-53 212.6 183 68.9
unitig_32.g11589 Utricularia gibba HOM05D005991 ORTHO05D007408 3.8e-53 212.2 187 66.8
MD16G1145900 Malus domestica HOM05D005991 ORTHO05D007408 4.9e-53 211.8 192 65.1
BcaB04g19640 Brassica carinata HOM05D005991 ORTHO05D007408 1.9e-52 209.9 181 66.9
HPP92_017296 Vanilla planifolia HOM05D005991 ORTHO05D007408 3.2e-52 209.1 188 65.4
BcaNung02118 Brassica carinata HOM05D005991 ORTHO05D007408 4.2e-52 208.8 189 65.6
C07p40040 Brassica napus HOM05D005991 ORTHO05D007408 4.2e-52 208.8 189 65.6
AT5G30490 Arabidopsis thaliana HOM05D005991 ORTHO05D007408 9.3e-52 207.6 195 63.1
Sp2g19950 Schrenkiella parvula HOM05D005991 ORTHO05D007408 1.6e-51 206.8 199 62.8
BolC7t44538H Brassica oleracea HOM05D005991 ORTHO05D007408 2.1e-51 206.5 189 65.6
A09p05050 Brassica napus HOM05D005991 ORTHO05D007408 2.7e-51 206.1 181 68.0
BraA09t36144Z Brassica rapa HOM05D005991 ORTHO05D007408 2.7e-51 206.1 181 68.0
HanXRQChr16g0526201 Helianthus annuus HOM05D005991 ORTHO05D007408 2.7e-51 206.1 192 63.0
Lsat_1_v5_gn_4_27741 Lactuca sativa HOM05D005991 ORTHO05D007408 4.6e-51 205.3 193 62.7
Carub.0020s0004 Capsella rubella HOM05D005991 ORTHO05D007408 1.0e-50 204.1 207 58.5
PGSC0003DMG400030844 Solanum tuberosum HOM05D005991 ORTHO05D007408 1.0e-50 204.1 188 65.4
AL6G41020 Arabidopsis lyrata HOM05D005991 ORTHO05D007408 1.3e-50 203.8 195 62.1
Sp6g09550 Schrenkiella parvula HOM05D005991 ORTHO05D007408 1.8e-50 203.4 194 62.4
Ah.11g042100 Amaranthus hybridus HOM05D005991 ORTHO05D007408 5.1e-50 201.8 204 61.8
Nitab4.5_0013885g0020 Nicotiana tabacum HOM05D005991 ORTHO05D007408 5.1e-50 201.8 187 64.7
ECA234G0222 Erigeron canadensis HOM05D005991 ORTHO05D007408 6.7e-50 201.4 193 64.8
Nitab4.5_0003374g0080 Nicotiana tabacum HOM05D005991 ORTHO05D007408 8.7e-50 201.1 188 66.5
arahy.Tifrunner.gnm1.ann1.KWD76U Arachis hypogaea HOM05D005991 ORTHO05D007408 1.1e-49 200.7 193 63.7
Cc10_g13510 Coffea canephora HOM05D005991 ORTHO05D007408 1.5e-49 200.3 191 64.4
BraA06t26732Z Brassica rapa HOM05D005991 ORTHO05D007408 2.5e-49 199.5 194 63.9
Solyc04g074800.3 Solanum lycopersicum HOM05D005991 ORTHO05D007408 5.7e-49 198.4 189 63.0
A06p38170 Brassica napus HOM05D005991 ORTHO05D007408 7.4e-49 198.0 194 63.4
Sopen04g029760 Solanum pennellii HOM05D005991 ORTHO05D007408 7.4e-49 198.0 187 63.6
PSO017G0870 Papaver somniferum HOM05D005991 ORTHO05D007408 3.7e-48 195.7 185 62.2
CARHR185530 Cardamine hirsuta HOM05D005991 ORTHO05D007408 1.1e-47 194.1 213 57.3
BcaC04g23714 Brassica carinata HOM05D005991 ORTHO05D007408 2.4e-47 193.0 202 59.9
BolC9t53475H Brassica oleracea HOM05D005991 ORTHO05D007408 2.4e-47 193.0 181 64.1
Cc00_g31090 Coffea canephora HOM05D005991 ORTHO05D007408 4.1e-47 192.2 213 58.2
C09p05460 Brassica napus HOM05D005991 ORTHO05D007408 5.3e-47 191.8 203 59.6
PSO675G8194 Papaver somniferum HOM05D005991 ORTHO05D007408 3.4e-46 189.1 185 60.0
Peaxi162Scf00139g00312 Petunia axillaris HOM05D005991 ORTHO05D007408 7.6e-46 188.0 185 62.7
CAN.G1173.8 Capsicum annuum HOM05D005991 ORTHO05D007408 1.0e-45 187.6 188 63.8
Thhalv10004825m.g Eutrema salsugineum HOM05D005991 ORTHO05D007408 2.2e-45 186.4 203 56.7
PGR119G0116 Punica granatum HOM05D005991 ORTHO05D007408 5.0e-45 185.3 124 78.2
ATR0693G149 Amborella trichopoda HOM05D005991 ORTHO05D007408 6.5e-45 184.9 190 60.5
BcaC06g30693 Brassica carinata HOM05D005991 ORTHO05D007408 3.3e-41 172.6 130 71.5
AUR62020284 Chenopodium quinoa HOM05D005991 ORTHO05D007408 1.3e-40 170.6 121 76.0
AUR62037721 Chenopodium quinoa HOM05D005991 ORTHO05D007408 3.7e-40 169.1 122 76.2
arahy.Tifrunner.gnm1.ann1.FWR109 Arachis hypogaea HOM05D005991 ORTHO05D007408 7.9e-35 151.4 120 72.5
SEGI_07358 Sequoiadendron giganteum HOM05D005991 ORTHO05D007408 1.1e-33 147.5 208 46.6
CSS0020858 Camellia sinensis var. sinensis HOM05D005991 ORTHO05D007408 1.3e-29 134.0 136 64.0
Mapoly0030s0047 Marchantia polymorpha HOM05D005991 ORTHO05D007408 6.5e-29 131.7 154 51.3
Cre14.g632600 Chlamydomonas reinhardtii HOM05D005991 ORTHO05D007408 8.5e-29 131.3 168 47.6
CDE05G0304 Ceratophyllum demersum HOM05D005991 ORTHO05D007408 5.3e-23 112.1 123 60.2
AagrBONN_evm.TU.Sc2ySwM_117.1275 Anthoceros agrestis HOM05D005991 ORTHO05D007408 3.5e-22 109.4 154 50.0
SMO203G0019 Selaginella moellendorffii HOM05D005991 ORTHO05D007408 4.5e-22 109.0 189 41.3
CBR_g56129 Chara braunii HOM05D005991 ORTHO05D007408 7.7e-22 108.2 122 48.4
Pp3c5_15500 Physcomitrium patens HOM05D005991 ORTHO05D007408 1.3e-21 107.5 203 34.5
MCO08G234 Micromonas commoda HOM05D005991 ORTHO05D007408 3.1e-15 86.3 156 39.7
PRCOL_00003370 Prasinoderma coloniale HOM05D005991 ORTHO05D007408 1.4e-10 70.9 192 33.9
AL1G65220 Arabidopsis lyrata HOM05D005991 ORTHO05D007408 1.4e-07 60.8 76 52.6


User provided reference genes

Program Settings