Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.01G127300 Carya illinoinensis HOM05D002165 ORTHO05D001531 1.3e-66 256.1 123 100.0
CiPaw.02G068700 Carya illinoinensis HOM05D002165 ORTHO05D001531 2.8e-24 115.5 77 72.7
QL06p014681 Quercus lobata HOM05D002165 ORTHO05D001531 9.3e-20 100.5 70 72.9
MD16G1133300 Malus domestica HOM05D002165 ORTHO05D001531 1.8e-18 96.3 74 62.2
MD13G1137400 Malus domestica HOM05D002165 ORTHO05D001531 2.3e-18 95.9 74 62.2
RcHm_v2.0_Chr4g0427981 Rosa chinensis HOM05D002165 ORTHO05D001531 8.8e-18 94.0 72 59.7
Lalb_Chr07g0181571 Lupinus albus HOM05D002165 ORTHO05D001531 1.1e-17 93.6 76 59.2
MD13G1137300 Malus domestica HOM05D002165 ORTHO05D001531 1.1e-17 93.6 89 57.3
FvH4_4g21750 Fragaria vesca HOM05D002165 ORTHO05D001531 1.5e-17 93.2 72 59.7
FAN07G0342 Fragaria x ananassa HOM05D002165 ORTHO05D001531 1.5e-17 93.2 72 59.7
FAN12G3878 Fragaria x ananassa HOM05D002165 ORTHO05D001531 1.5e-17 93.2 72 59.7
FAN17G1996 Fragaria x ananassa HOM05D002165 ORTHO05D001531 1.5e-17 93.2 72 59.7
Prupe.1G207900 Prunus persica HOM05D002165 ORTHO05D001531 9.7e-17 90.5 73 63.0
Glyma.17G042500 Glycine max HOM05D002165 ORTHO05D001531 3.7e-16 88.6 74 60.8
Glyma.13G117400 Glycine max HOM05D002165 ORTHO05D001531 6.3e-16 87.8 74 59.5
Phvul.003G124200 Phaseolus vulgaris HOM05D002165 ORTHO05D001531 6.3e-16 87.8 73 60.3
Ca_02322_v3 Cicer arietinum L. HOM05D002165 ORTHO05D001531 8.2e-16 87.4 75 56.0
Ca_30364_v3 Cicer arietinum L. HOM05D002165 ORTHO05D001531 8.2e-16 87.4 75 56.0
Lalb_Chr12g0200511 Lupinus albus HOM05D002165 ORTHO05D001531 2.4e-15 85.9 73 57.5
Medtr2g044970 Medicago truncatula HOM05D002165 ORTHO05D001531 2.4e-15 85.9 75 54.7
GSVIVG01017705001 Vitis vinifera HOM05D002165 ORTHO05D001531 6.9e-15 84.3 74 62.2
GSVIVG01017706001 Vitis vinifera HOM05D002165 ORTHO05D001531 6.9e-15 84.3 74 62.2
GSVIVG01017704001 Vitis vinifera HOM05D002165 ORTHO05D001531 9.1e-15 84.0 73 60.3
GSVIVG01017707001 Vitis vinifera HOM05D002165 ORTHO05D001531 2.0e-14 82.8 75 61.3
Glyma.09G080700 Glycine max HOM05D002165 ORTHO05D001531 5.9e-14 81.3 76 52.6
Psat1g017000 Pisum sativum HOM05D002165 ORTHO05D001531 5.9e-14 81.3 75 54.7
TPR.G29438 Trifolium pratense HOM05D002165 ORTHO05D001531 5.9e-14 81.3 74 55.4
Psat4g020920 Pisum sativum HOM05D002165 ORTHO05D001531 7.7e-14 80.9 75 58.7
Psat1g016840 Pisum sativum HOM05D002165 ORTHO05D001531 1.3e-13 80.1 75 53.3
Glyma.15G185700 Glycine max HOM05D002165 ORTHO05D001531 1.7e-13 79.7 75 53.3
Aqoxy5G02840 Aquilegia oxysepala HOM05D002165 ORTHO05D001531 6.5e-13 77.8 73 57.5
Lj6g0008561 Lotus japonicus HOM05D002165 ORTHO05D001531 8.5e-13 77.4 75 52.0
Cpa.g.sc48.225 Carica papaya HOM05D002165 ORTHO05D001531 1.9e-12 76.3 73 56.2
Lalb_Chr13g0299051 Lupinus albus HOM05D002165 ORTHO05D001531 7.2e-12 74.3 78 51.3
Manes.03G213400 Manihot esculenta HOM05D002165 ORTHO05D001531 7.2e-12 74.3 73 54.8
Phvul.009G221300 Phaseolus vulgaris HOM05D002165 ORTHO05D001531 7.2e-12 74.3 75 50.7
Lalb_Chr08g0232971 Lupinus albus HOM05D002165 ORTHO05D001531 1.6e-11 73.2 75 53.3
TAR633G1086 Trochodendron aralioides HOM05D002165 ORTHO05D001531 1.6e-11 73.2 74 58.1
Ca_21362_v3 Cicer arietinum L. HOM05D002165 ORTHO05D001531 2.7e-11 72.4 74 50.0
Cpa.g.sc146.6 Carica papaya HOM05D002165 ORTHO05D001531 3.6e-11 72.0 68 57.4
Potri.010G003900 Populus trichocarpa HOM05D002165 ORTHO05D001531 3.6e-11 72.0 75 58.7
PSO761G0534 Papaver somniferum HOM05D002165 ORTHO05D001531 6.1e-11 71.2 77 50.6
Cfa015751 Carpinus fangiana HOM05D002165 ORTHO05D001531 1.0e-10 70.5 77 51.9
CARHR186860 Cardamine hirsuta HOM05D002165 ORTHO05D001531 1.4e-10 70.1 76 50.0
Glyma.15G185400 Glycine max HOM05D002165 ORTHO05D001531 1.4e-10 70.1 79 48.1
Phvul.009G221100 Phaseolus vulgaris HOM05D002165 ORTHO05D001531 1.4e-10 70.1 75 50.7
Phvul.009G221200 Phaseolus vulgaris HOM05D002165 ORTHO05D001531 1.4e-10 70.1 72 50.0
BcaNung03907 Brassica carinata HOM05D002165 ORTHO05D001531 2.3e-10 69.3 75 50.7
A06p36950 Brassica napus HOM05D002165 ORTHO05D001531 2.3e-10 69.3 75 50.7
BraA06t26620Z Brassica rapa HOM05D002165 ORTHO05D001531 2.3e-10 69.3 75 50.7
Phvul.009G221400 Phaseolus vulgaris HOM05D002165 ORTHO05D001531 2.3e-10 69.3 75 49.3
BcaC01g04301 Brassica carinata HOM05D002165 ORTHO05D001531 3.0e-10 68.9 72 52.8
C03p41790 Brassica napus HOM05D002165 ORTHO05D001531 3.0e-10 68.9 72 52.8
BolC3t16462H Brassica oleracea HOM05D002165 ORTHO05D001531 3.0e-10 68.9 72 52.8
Lalb_Chr11g0073701 Lupinus albus HOM05D002165 ORTHO05D001531 3.0e-10 68.9 81 46.9
Sabra10G0003300 Salix brachista HOM05D002165 ORTHO05D001531 3.0e-10 68.9 121 35.5
Glyma.15G185600 Glycine max HOM05D002165 ORTHO05D001531 3.9e-10 68.6 58 56.9
TPR.G29235 Trifolium pratense HOM05D002165 ORTHO05D001531 3.9e-10 68.6 75 53.3
Thhalv10021847m.g Eutrema salsugineum HOM05D002165 ORTHO05D001531 5.1e-10 68.2 71 54.9
BcaNung03681 Brassica carinata HOM05D002165 ORTHO05D001531 6.7e-10 67.8 75 49.3
C07p41550 Brassica napus HOM05D002165 ORTHO05D001531 6.7e-10 67.8 75 49.3
BolC7t44687H Brassica oleracea HOM05D002165 ORTHO05D001531 6.7e-10 67.8 75 49.3
Thhalv10005460m.g Eutrema salsugineum HOM05D002165 ORTHO05D001531 6.7e-10 67.8 75 46.7
Sed0018176 Sechium edule HOM05D002165 ORTHO05D001531 6.7e-10 67.8 76 52.6
BcaB04g19240 Brassica carinata HOM05D002165 ORTHO05D001531 8.8e-10 67.4 72 52.8
BcaB07g29941 Brassica carinata HOM05D002165 ORTHO05D001531 8.8e-10 67.4 75 49.3
A03p34320 Brassica napus HOM05D002165 ORTHO05D001531 8.8e-10 67.4 72 52.8
BraA02t08873Z Brassica rapa HOM05D002165 ORTHO05D001531 8.8e-10 67.4 75 49.3
BraA03t12608Z Brassica rapa HOM05D002165 ORTHO05D001531 8.8e-10 67.4 72 52.8
BcaC03g17834 Brassica carinata HOM05D002165 ORTHO05D001531 1.1e-09 67.0 75 49.3
BcaNung06223 Brassica carinata HOM05D002165 ORTHO05D001531 1.1e-09 67.0 75 49.3
A02p39040 Brassica napus HOM05D002165 ORTHO05D001531 1.1e-09 67.0 75 49.3
C02p58650 Brassica napus HOM05D002165 ORTHO05D001531 1.1e-09 67.0 75 49.3
BolC2t11925H Brassica oleracea HOM05D002165 ORTHO05D001531 1.1e-09 67.0 75 49.3
Lalb_Chr11g0073691 Lupinus albus HOM05D002165 ORTHO05D001531 1.1e-09 67.0 77 51.9
BcaC04g23632 Brassica carinata HOM05D002165 ORTHO05D001531 1.5e-09 66.6 75 48.0
A09p05720 Brassica napus HOM05D002165 ORTHO05D001531 1.5e-09 66.6 75 48.0
C09p06310 Brassica napus HOM05D002165 ORTHO05D001531 1.5e-09 66.6 75 48.0
BolC9t53551H Brassica oleracea HOM05D002165 ORTHO05D001531 1.5e-09 66.6 75 48.0
BraA09t36213Z Brassica rapa HOM05D002165 ORTHO05D001531 1.5e-09 66.6 75 48.0
Ciclev10010714m.g Citrus clementina HOM05D002165 ORTHO05D001531 1.5e-09 66.6 77 48.1
Gohir.A02G059800 Gossypium hirsutum HOM05D002165 ORTHO05D001531 1.5e-09 66.6 73 56.2
Gohir.D02G065400 Gossypium hirsutum HOM05D002165 ORTHO05D001531 1.5e-09 66.6 73 56.2
Gorai.005G074100 Gossypium raimondii HOM05D002165 ORTHO05D001531 1.5e-09 66.6 73 56.2
Lalb_Chr11g0073721 Lupinus albus HOM05D002165 ORTHO05D001531 1.5e-09 66.6 76 50.0
Sc25g0001810 Simmondsia chinensis HOM05D002165 ORTHO05D001531 1.5e-09 66.6 73 49.3
TAR362G0276 Trochodendron aralioides HOM05D002165 ORTHO05D001531 1.5e-09 66.6 74 54.1
Ciclev10006471m.g Citrus clementina HOM05D002165 ORTHO05D001531 2.0e-09 66.2 75 58.7
Lalb_Chr11g0073711 Lupinus albus HOM05D002165 ORTHO05D001531 2.0e-09 66.2 77 50.6
Medtr2g044960 Medicago truncatula HOM05D002165 ORTHO05D001531 2.0e-09 66.2 75 52.0
AL6G38560 Arabidopsis lyrata HOM05D002165 ORTHO05D001531 3.3e-09 65.5 76 48.7
BcaB04g19717 Brassica carinata HOM05D002165 ORTHO05D001531 3.3e-09 65.5 75 46.7
Gohir.A09G242300 Gossypium hirsutum HOM05D002165 ORTHO05D001531 3.3e-09 65.5 72 51.4
Sp3g04720 Schrenkiella parvula HOM05D002165 ORTHO05D001531 3.3e-09 65.5 72 51.4
EL10Ac3g06229 Beta vulgaris HOM05D002165 ORTHO05D001531 4.4e-09 65.1 73 50.7
CARHR080310 Cardamine hirsuta HOM05D002165 ORTHO05D001531 4.4e-09 65.1 71 50.7
AUR62002532 Chenopodium quinoa HOM05D002165 ORTHO05D001531 4.4e-09 65.1 71 53.5
Carub.0006s2437 Capsella rubella HOM05D002165 ORTHO05D001531 5.7e-09 64.7 76 47.4
Ciclev10013222m.g Citrus clementina HOM05D002165 ORTHO05D001531 5.7e-09 64.7 77 48.1
Ciclev10013801m.g Citrus clementina HOM05D002165 ORTHO05D001531 5.7e-09 64.7 76 48.7
Gohir.D09G243000 Gossypium hirsutum HOM05D002165 ORTHO05D001531 5.7e-09 64.7 72 50.0
Gorai.006G266800 Gossypium raimondii HOM05D002165 ORTHO05D001531 5.7e-09 64.7 72 50.0
Medtr4g124220 Medicago truncatula HOM05D002165 ORTHO05D001531 5.7e-09 64.7 77 49.4
Atru.chr12.1534 Acer truncatum HOM05D002165 ORTHO05D001531 7.4e-09 64.3 76 47.4
Atru.chr12.1536 Acer truncatum HOM05D002165 ORTHO05D001531 7.4e-09 64.3 76 47.4
Aqoxy2G02476 Aquilegia oxysepala HOM05D002165 ORTHO05D001531 7.4e-09 64.3 69 52.2
THA.LOC104818754 Tarenaya hassleriana HOM05D002165 ORTHO05D001531 7.4e-09 64.3 69 52.2
Aa31LG5G16230 Aethionema arabicum HOM05D002165 ORTHO05D001531 9.7e-09 63.9 70 54.3
Carub.0003s0521 Capsella rubella HOM05D002165 ORTHO05D001531 9.7e-09 63.9 70 52.9
Glyma.09G080800 Glycine max HOM05D002165 ORTHO05D001531 9.7e-09 63.9 58 55.2
Ciclev10013220m.g Citrus clementina HOM05D002165 ORTHO05D001531 1.3e-08 63.5 77 48.1
Aa31LG11G9930 Aethionema arabicum HOM05D002165 ORTHO05D001531 1.7e-08 63.2 72 47.2
Lalb_Chr11g0073741 Lupinus albus HOM05D002165 ORTHO05D001531 1.7e-08 63.2 77 49.4
Prupe.6G304300 Prunus persica HOM05D002165 ORTHO05D001531 1.7e-08 63.2 73 45.2
Thecc.04G314700 Theobroma cacao HOM05D002165 ORTHO05D001531 1.7e-08 63.2 73 52.1
AT3G05858 Arabidopsis thaliana HOM05D002165 ORTHO05D001531 2.2e-08 62.8 71 50.7
AUR62023661 Chenopodium quinoa HOM05D002165 ORTHO05D001531 2.2e-08 62.8 71 52.1
AL3G16610 Arabidopsis lyrata HOM05D002165 ORTHO05D001531 2.8e-08 62.4 71 50.7
BcaC09g47857 Brassica carinata HOM05D002165 ORTHO05D001531 2.8e-08 62.4 71 52.1
BolC1t05659H Brassica oleracea HOM05D002165 ORTHO05D001531 2.8e-08 62.4 71 52.1
BraA01t04469Z Brassica rapa HOM05D002165 ORTHO05D001531 2.8e-08 62.4 71 52.1
COL.COLO4_05484 Corchorus olitorius HOM05D002165 ORTHO05D001531 3.7e-08 62.0 83 45.8
MELO3C006762.2 Cucumis melo HOM05D002165 ORTHO05D001531 3.7e-08 62.0 80 50.0
Peaxi162Scf00194g00002 Petunia axillaris HOM05D002165 ORTHO05D001531 3.7e-08 62.0 76 48.7
A05p42200 Brassica napus HOM05D002165 ORTHO05D001531 6.3e-08 61.2 70 50.0
BraA05t22939Z Brassica rapa HOM05D002165 ORTHO05D001531 6.3e-08 61.2 70 50.0
Eucgr.H01334 Eucalyptus grandis HOM05D002165 ORTHO05D001531 6.3e-08 61.2 73 45.2
Phvul.009G221500 Phaseolus vulgaris HOM05D002165 ORTHO05D001531 6.3e-08 61.2 58 51.7
BcaC05g29776 Brassica carinata HOM05D002165 ORTHO05D001531 1.1e-07 60.5 68 50.0
COL.COLO4_36933 Corchorus olitorius HOM05D002165 ORTHO05D001531 1.1e-07 60.5 72 52.8
BcaC05g30083 Brassica carinata HOM05D002165 ORTHO05D001531 1.4e-07 60.1 68 50.0
C05p61420 Brassica napus HOM05D002165 ORTHO05D001531 1.4e-07 60.1 68 50.0
BolC5t34800H Brassica oleracea HOM05D002165 ORTHO05D001531 1.4e-07 60.1 68 50.0
Eucgr.H01327 Eucalyptus grandis HOM05D002165 ORTHO05D001531 1.4e-07 60.1 73 45.2
Eucgr.H01329 Eucalyptus grandis HOM05D002165 ORTHO05D001531 1.4e-07 60.1 73 45.2
MD04G1186400 Malus domestica HOM05D002165 ORTHO05D001531 1.4e-07 60.1 73 43.8
Eucgr.H01331 Eucalyptus grandis HOM05D002165 ORTHO05D001531 1.8e-07 59.7 73 46.6
Thhalv10022047m.g Eutrema salsugineum HOM05D002165 ORTHO05D001531 2.4e-07 59.3 85 36.5
AT5G26620 Arabidopsis thaliana HOM05D002165 ORTHO05D001531 3.1e-07 58.9 53 52.8
A01p30200 Brassica napus HOM05D002165 ORTHO05D001531 3.1e-07 58.9 71 49.3
Eucgr.H01321 Eucalyptus grandis HOM05D002165 ORTHO05D001531 4.1e-07 58.5 73 46.6
Eucgr.H01325 Eucalyptus grandis HOM05D002165 ORTHO05D001531 4.1e-07 58.5 73 43.8
Eucgr.H01326 Eucalyptus grandis HOM05D002165 ORTHO05D001531 4.1e-07 58.5 73 43.8
Nn3g21955 Nelumbo nucifera HOM05D002165 ORTHO05D001531 4.1e-07 58.5 72 50.0
Prupe.6G304200 Prunus persica HOM05D002165 ORTHO05D001531 4.1e-07 58.5 73 45.2
CARHR092880 Cardamine hirsuta HOM05D002165 ORTHO05D001531 5.3e-07 58.2 78 46.2
CsaV3_3G015630 Cucumis sativus L. HOM05D002165 ORTHO05D001531 7.0e-07 57.8 65 52.3
DCAR_002558 Daucus carota HOM05D002165 ORTHO05D001531 7.0e-07 57.8 76 44.7
Eucgr.H01332 Eucalyptus grandis HOM05D002165 ORTHO05D001531 7.0e-07 57.8 73 45.2
FvH4_6g08530 Fragaria vesca HOM05D002165 ORTHO05D001531 7.0e-07 57.8 73 43.8
FAN14G5435 Fragaria x ananassa HOM05D002165 ORTHO05D001531 7.0e-07 57.8 73 43.8
Eucgr.H01330 Eucalyptus grandis HOM05D002165 ORTHO05D001531 1.2e-06 57.0 73 43.8
arahy.Tifrunner.gnm1.ann1.RMBA11 Arachis hypogaea HOM05D008018 ORTHO05D001531 1.5e-06 56.6 77 48.1
Eucgr.H01328 Eucalyptus grandis HOM05D002165 ORTHO05D001531 1.5e-06 56.6 73 43.8
ClCG00G002170 Citrullus lanatus HOM05D002165 ORTHO05D001531 2.0e-06 56.2 77 44.2
ClCG08G002310 Citrullus lanatus HOM05D002165 ORTHO05D001531 2.0e-06 56.2 77 44.2
ClCG08G002360 Citrullus lanatus HOM05D002165 ORTHO05D001531 2.0e-06 56.2 77 44.2
DCAR_023419 Daucus carota HOM05D002165 ORTHO05D001531 2.0e-06 56.2 71 40.8
Eucgr.H01324 Eucalyptus grandis HOM05D002165 ORTHO05D001531 2.0e-06 56.2 73 45.2
FAN02G1676 Fragaria x ananassa HOM05D002165 ORTHO05D001531 2.0e-06 56.2 73 43.8
FAN05G4164 Fragaria x ananassa HOM05D002165 ORTHO05D001531 2.0e-06 56.2 73 43.8
FAN09G0584 Fragaria x ananassa HOM05D002165 ORTHO05D001531 2.0e-06 56.2 73 43.8
Sed0022046 Sechium edule HOM05D002165 ORTHO05D001531 2.0e-06 56.2 74 44.6
AUR62000479 Chenopodium quinoa HOM05D002165 ORTHO05D001531 2.6e-06 55.8 41 58.5
CsaV3_6G002670 Cucumis sativus L. HOM05D002165 ORTHO05D001531 2.6e-06 55.8 78 42.3
ECA236G2737 Erigeron canadensis HOM05D002165 ORTHO05D001531 2.6e-06 55.8 69 43.5
Aa31LG8G4440 Aethionema arabicum HOM05D002165 ORTHO05D001531 3.4e-06 55.5 79 43.0
AUR62006822 Chenopodium quinoa HOM05D002165 ORTHO05D001531 3.4e-06 55.5 48 52.1
Nitab4.5_0000800g0060 Nicotiana tabacum HOM05D002165 ORTHO05D001531 3.4e-06 55.5 64 50.0
Nitab4.5_0003573g0030 Nicotiana tabacum HOM05D002165 ORTHO05D001531 3.4e-06 55.5 64 50.0
Nitab4.5_0003573g0040 Nicotiana tabacum HOM05D002165 ORTHO05D001531 3.4e-06 55.5 64 50.0
Actinidia17737 Actinidia chinensis HOM05D002165 ORTHO05D001531 4.5e-06 55.1 63 46.0
AL3G30640 Arabidopsis lyrata HOM05D002165 ORTHO05D001531 4.5e-06 55.1 78 42.3
BcaC05g28774 Brassica carinata HOM05D002165 ORTHO05D001531 4.5e-06 55.1 75 37.3
C05p48810 Brassica napus HOM05D002165 ORTHO05D001531 4.5e-06 55.1 75 37.3
BolC5t33619H Brassica oleracea HOM05D002165 ORTHO05D001531 4.5e-06 55.1 75 37.3
Sed0005500 Sechium edule HOM05D002165 ORTHO05D001531 4.5e-06 55.1 75 45.3
Migut.N00975 Erythranthe guttata HOM05D002165 ORTHO05D001531 5.9e-06 54.7 75 45.3
Manes.15G075800 Manihot esculenta HOM05D002165 ORTHO05D001531 5.9e-06 54.7 73 45.2
BcaB04g18950 Brassica carinata HOM05D002165 ORTHO05D001531 7.7e-06 54.3 78 42.3
Sed0016802 Sechium edule HOM05D002165 ORTHO05D001531 7.7e-06 54.3 77 42.9


User provided reference genes

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