Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.01G119400 Carya illinoinensis HOM05D002342 ORTHO05D002407 2.9e-174 615.1 314 100.0
Haze_11629 Corylus avellana HOM05D002342 ORTHO05D002407 4.4e-58 229.2 304 48.7
Manes.03G146000 Manihot esculenta HOM05D002342 ORTHO05D002407 3.8e-41 172.9 313 40.3
Cfa014941 Carpinus fangiana HOM05D002342 ORTHO05D002407 1.9e-40 170.6 304 40.5
Prupe.1G159200 Prunus persica HOM05D002342 ORTHO05D002407 2.7e-39 166.8 306 41.5
Dinv27218 Davidia involucrata HOM05D002342 ORTHO05D002407 6.0e-39 165.6 304 39.1
MD04G1012900 Malus domestica HOM05D002342 ORTHO05D002407 7.9e-39 165.2 305 42.3
TWI09G0668 Tripterygium wilfordii HOM05D002342 ORTHO05D002407 3.3e-37 159.8 305 38.7
QL05p014183 Quercus lobata HOM05D002342 ORTHO05D002407 2.0e-34 150.6 279 43.7
CSS0000956 Camellia sinensis var. sinensis HOM05D002342 ORTHO05D002407 5.9e-34 149.1 305 39.3
Ciclev10004121m.g Citrus clementina HOM05D002342 ORTHO05D002407 1.0e-33 148.3 305 36.7
vmacro00455 Vaccinium macrocarpon HOM05D002342 ORTHO05D002407 1.3e-33 147.9 316 37.7
Actinidia23411 Actinidia chinensis HOM05D002342 ORTHO05D002407 2.9e-33 146.7 315 37.8
Rhsim09G0058500 Rhododendron simsii HOM05D002342 ORTHO05D002407 1.9e-32 144.1 312 37.2
Thecc.04G199700 Theobroma cacao HOM05D002342 ORTHO05D002407 1.6e-31 141.0 251 38.6
Actinidia35855 Actinidia chinensis HOM05D002342 ORTHO05D002407 3.6e-31 139.8 311 35.7
Potri.001G317200 Populus trichocarpa HOM05D002342 ORTHO05D002407 3.6e-31 139.8 321 33.6
Sed0007147 Sechium edule HOM05D002342 ORTHO05D002407 4.6e-31 139.4 304 36.8
Sabra16G0200600 Salix brachista HOM05D002342 ORTHO05D002407 7.9e-31 138.7 323 33.1
VMungo1383G2708 Vigna mungo HOM05D002342 ORTHO05D002407 7.9e-31 138.7 304 38.2
Duzib212G0344 Durio zibethinus HOM05D002342 ORTHO05D002407 1.8e-30 137.5 286 37.4
Phvul.003G291200 Phaseolus vulgaris HOM05D002342 ORTHO05D002407 8.7e-30 135.2 305 38.0
Sed0020750 Sechium edule HOM05D002342 ORTHO05D002407 8.7e-30 135.2 304 36.8
TAR365G0690 Trochodendron aralioides HOM05D002342 ORTHO05D002407 2.5e-29 133.7 328 35.1
TPR.G11869 Trifolium pratense HOM05D002342 ORTHO05D002407 9.7e-29 131.7 304 33.6
Gorai.005G129600 Gossypium raimondii HOM05D002342 ORTHO05D002407 1.3e-28 131.3 288 34.7
Gohir.D02G113900 Gossypium hirsutum HOM05D002342 ORTHO05D002407 2.2e-28 130.6 288 34.7
TAR365G0670 Trochodendron aralioides HOM05D002342 ORTHO05D002407 2.2e-28 130.6 328 34.8
AUR62020836 Chenopodium quinoa HOM05D002342 ORTHO05D002407 1.8e-27 127.5 306 35.3
ClCG05G003260 Citrullus lanatus HOM05D002342 ORTHO05D002407 1.8e-27 127.5 304 34.9
Atru.chr4.1618 Acer truncatum HOM05D002342 ORTHO05D002407 4.1e-27 126.3 305 35.7
MELO3C006307.2 Cucumis melo HOM05D002342 ORTHO05D002407 5.3e-27 125.9 303 35.6
RcHm_v2.0_Chr6g0275261 Rosa chinensis HOM05D002342 ORTHO05D002407 5.3e-27 125.9 307 37.5
CsaV3_3G010890 Cucumis sativus L. HOM05D002342 ORTHO05D002407 1.2e-26 124.8 303 35.3
arahy.Tifrunner.gnm1.ann1.ZGTC82 Arachis hypogaea HOM05D002342 ORTHO05D002407 2.6e-26 123.6 306 35.0
Glyma.08G111400 Glycine max HOM05D002342 ORTHO05D002407 5.9e-26 122.5 267 37.8
Hund05344 Selenicereus undatus HOM05D002342 ORTHO05D002407 5.9e-26 122.5 306 33.3
Medtr8g085280 Medicago truncatula HOM05D002342 ORTHO05D002407 1.0e-25 121.7 305 35.4
GSVIVG01020920001 Vitis vinifera HOM05D002342 ORTHO05D002407 1.0e-25 121.7 304 34.2
DCAR_002789 Daucus carota HOM05D002342 ORTHO05D002407 1.7e-25 120.9 303 34.3
Peaxi162Scf00047g00342 Petunia axillaris HOM05D002342 ORTHO05D002407 3.8e-25 119.8 306 31.7
Gohir.A03G095600 Gossypium hirsutum HOM05D002342 ORTHO05D002407 5.0e-25 119.4 294 32.0
MD04G1012800 Malus domestica HOM05D002342 ORTHO05D002407 8.5e-25 118.6 304 34.9
QL05p014435 Quercus lobata HOM05D002342 ORTHO05D002407 1.1e-24 118.2 308 33.1
Ca_17971_v3 Cicer arietinum L. HOM05D002342 ORTHO05D002407 1.4e-24 117.9 307 35.5
Lj4g0001754 Lotus japonicus HOM05D002342 ORTHO05D002407 1.4e-24 117.9 305 32.8
EL10Ac3g07477 Beta vulgaris HOM05D002342 ORTHO05D002407 4.2e-24 116.3 305 33.1
CANSAT78G2520 Cannabis sativa HOM05D002342 ORTHO05D002407 4.2e-24 116.3 305 34.8
Psat7g074440 Pisum sativum HOM05D002342 ORTHO05D002407 4.2e-24 116.3 305 33.8
FvH4_2g13620 Fragaria vesca HOM05D002342 ORTHO05D002407 7.2e-24 115.5 307 35.2
Sc13g0000230 Simmondsia chinensis HOM05D002342 ORTHO05D002407 9.4e-24 115.2 307 32.9
Oeu055768.2 Olea europaea HOM05D002342 ORTHO05D002407 1.2e-23 114.8 304 33.2
Nitab4.5_0006215g0010 Nicotiana tabacum HOM05D002342 ORTHO05D002407 1.6e-23 114.4 305 29.5
FAN24G1108 Fragaria x ananassa HOM05D002342 ORTHO05D002407 2.7e-23 113.6 307 34.9
QL05p014243 Quercus lobata HOM05D002342 ORTHO05D002407 2.7e-23 113.6 308 32.8
FAN15G0433 Fragaria x ananassa HOM05D002342 ORTHO05D002407 6.1e-23 112.5 307 34.9
Nitab4.5_0000401g0100 Nicotiana tabacum HOM05D002342 ORTHO05D002407 1.0e-22 111.7 302 30.5
Dinv38212 Davidia involucrata HOM05D002342 ORTHO05D002407 1.4e-22 111.3 307 30.6
Lalb_Chr12g0205541 Lupinus albus HOM05D002342 ORTHO05D002407 1.4e-22 111.3 342 33.0
Solyc09g092100.4 Solanum lycopersicum HOM05D002342 ORTHO05D002407 1.4e-22 111.3 304 30.9
Ah.14g086370 Amaranthus hybridus HOM05D002342 ORTHO05D002407 3.0e-22 110.2 307 32.2
Sopen09g034970 Solanum pennellii HOM05D002342 ORTHO05D002407 8.8e-22 108.6 304 30.6
VMungo1127G1482 Vigna mungo HOM05D002342 ORTHO05D002407 3.3e-21 106.7 262 36.3
Hma1.2p1_0383F.1_g140550 Hydrangea macrophylla HOM05D002342 ORTHO05D002407 4.3e-21 106.3 263 34.6
Nn1g07933 Nelumbo nucifera HOM05D002342 ORTHO05D002407 4.3e-21 106.3 313 32.6
AUR62018583 Chenopodium quinoa HOM05D002342 ORTHO05D002407 9.7e-21 105.1 301 32.6
CAN.G1333.8 Capsicum annuum HOM05D002342 ORTHO05D002407 1.7e-20 104.4 304 30.3
PSO017G5596 Papaver somniferum HOM05D002342 ORTHO05D002407 2.8e-20 103.6 326 29.8
PSO063G4028 Papaver somniferum HOM05D002342 ORTHO05D002407 4.8e-20 102.8 326 29.8
SHI00028 Sapria himalayana HOM05D002342 ORTHO05D002407 2.4e-19 100.5 303 31.0
Haze_11626 Corylus avellana HOM05D002342 ORTHO05D002407 5.3e-19 99.4 263 34.2
SGA_v2.0_scaffold31G12585 Striga asiatica HOM05D002342 ORTHO05D002407 5.3e-19 99.4 306 29.7
RcHm_v2.0_Chr4g0414351 Rosa chinensis HOM05D002342 ORTHO05D002407 6.9e-19 99.0 309 31.7
Actinidia38750 Actinidia chinensis HOM05D002342 ORTHO05D002407 1.0e-17 95.1 313 29.4
COL.COLO4_20180 Corchorus olitorius HOM05D002342 ORTHO05D002407 1.3e-17 94.7 261 31.4
Lj6A526G34 Lonicera japonica HOM05D002342 ORTHO05D002407 1.7e-17 94.4 265 30.6
Lj6C516G5 Lonicera japonica HOM05D002342 ORTHO05D002407 5.0e-17 92.8 266 31.2
PGR083G1386 Punica granatum HOM05D002342 ORTHO05D002407 5.0e-17 92.8 319 31.7
Aqoxy2G03980 Aquilegia oxysepala HOM05D002342 ORTHO05D002407 9.4e-16 88.6 309 29.8
Migut.N00402 Erythranthe guttata HOM05D002342 ORTHO05D002407 6.1e-15 85.9 303 27.7
Cc03_g08030 Coffea canephora HOM05D002342 ORTHO05D002407 1.0e-14 85.1 315 29.2
ECA233G4700 Erigeron canadensis HOM05D002342 ORTHO05D002407 3.0e-14 83.6 303 30.7
FvH4_4g13660 Fragaria vesca HOM05D002342 ORTHO05D002407 1.1e-13 81.6 315 30.2
FAN12G2750 Fragaria x ananassa HOM05D002342 ORTHO05D002407 1.1e-13 81.6 315 30.2
Hma1.2p1_0383F.1_g140570 Hydrangea macrophylla HOM05D002342 ORTHO05D002407 1.1e-13 81.6 265 30.6
MBI04_g21151_MAGBIO Magnolia biondii HOM05D002342 ORTHO05D002407 1.1e-13 81.6 341 28.4
FAN07G2373 Fragaria x ananassa HOM05D002342 ORTHO05D002407 2.0e-13 80.9 315 29.8
FAN22G0412 Fragaria x ananassa HOM05D002342 ORTHO05D002407 3.3e-13 80.1 316 30.7
ATR0829G161 Amborella trichopoda HOM05D002342 ORTHO05D002407 1.1e-11 75.1 329 27.1
HanXRQChr02g0059031 Helianthus annuus HOM05D002342 ORTHO05D002407 2.4e-11 73.9 308 28.6
HanXRQChr16g0498001 Helianthus annuus HOM05D002342 ORTHO05D002407 2.4e-11 73.9 310 29.0
Prupe.1G358100 Prunus persica HOM05D002342 ORTHO05D002407 2.6e-10 70.5 118 44.9
FvH4_4g13620 Fragaria vesca HOM05D002342 ORTHO05D002407 3.5e-10 70.1 149 39.6
unitig_8.g4999 Utricularia gibba HOM05D002342 ORTHO05D002407 4.5e-10 69.7 268 28.7
THA.LOC104804807 Tarenaya hassleriana HOM05D002342 ORTHO05D002407 5.9e-10 69.3 308 27.3
CiPaw.01G119100 Carya illinoinensis HOM05D002342 ORTHO05D002407 7.7e-10 68.9 62 59.7
Lj6C522G10 Lonicera japonica HOM05D002342 ORTHO05D002407 1.3e-09 68.2 193 30.1
Carub.0007s2871 Capsella rubella HOM05D002342 ORTHO05D002407 6.5e-09 65.9 304 26.3
CARHR219530 Cardamine hirsuta HOM05D002342 ORTHO05D002407 1.5e-08 64.7 287 27.2
A08p06660 Brassica napus HOM05D002342 ORTHO05D002407 3.2e-08 63.5 304 27.0
BraA08t32682Z Brassica rapa HOM05D002342 ORTHO05D002407 3.2e-08 63.5 304 27.0
AT4G13750 Arabidopsis thaliana HOM05D002342 ORTHO05D002407 4.2e-08 63.2 304 27.0
Sp7g11520 Schrenkiella parvula HOM05D002342 ORTHO05D002407 4.2e-08 63.2 304 27.3
Lsat_1_v5_gn_6_60921 Lactuca sativa HOM05D002342 ORTHO05D002407 7.2e-08 62.4 315 27.0
Thhalv10024181m.g Eutrema salsugineum HOM05D002342 ORTHO05D002407 9.4e-08 62.0 304 27.0
AL7G42760 Arabidopsis lyrata HOM05D002342 ORTHO05D002407 2.1e-07 60.8 305 28.2
BcaB04g17657 Brassica carinata HOM05D002342 ORTHO05D002407 2.1e-07 60.8 304 27.0
Zm00001eb061370 Zea mays HOM05D002342 ORTHO05D002407 2.1e-07 60.8 307 24.8
CARHR008150 Cardamine hirsuta HOM05D002342 ORTHO05D002407 6.1e-07 59.3 308 27.9
Lj6C524T10 Lonicera japonica HOM05D002180 ORTHO05D001339 1.0e-06 58.5 261 26.8
BraA06t23740Z Brassica rapa HOM05D002342 ORTHO05D002407 1.4e-06 58.2 302 25.2
Migut.G00912 Erythranthe guttata HOM05D002342 ORTHO05D002407 1.8e-06 57.8 179 32.4
Os03g0803800 Oryza sativa ssp. japonica HOM05D002342 ORTHO05D002407 1.8e-06 57.8 306 24.5
MD04G1013300 Malus domestica HOM05D002342 ORTHO05D002407 2.3e-06 57.4 104 41.3
Migut.N01844 Erythranthe guttata HOM05D002342 ORTHO05D002407 3.0e-06 57.0 61 49.2
A06p05320 Brassica napus HOM05D002342 ORTHO05D002407 5.2e-06 56.2 309 23.0
PSO017G1666 Papaver somniferum HOM05D002342 ORTHO05D002407 5.2e-06 56.2 329 25.5


User provided reference genes

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