Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.01G119200 Carya illinoinensis HOM05D002342 ORTHO05D002407 5.7e-164 580.9 299 100.0
Haze_11629 Corylus avellana HOM05D002342 ORTHO05D002407 2.2e-83 313.2 278 66.5
Cfa014941 Carpinus fangiana HOM05D002342 ORTHO05D002407 3.9e-80 302.4 185 81.1
RcHm_v2.0_Chr6g0275261 Rosa chinensis HOM05D002342 ORTHO05D002407 2.0e-76 290.0 295 56.9
Haze_11626 Corylus avellana HOM05D002342 ORTHO05D002407 7.7e-76 288.1 190 75.8
Dinv27218 Davidia involucrata HOM05D002342 ORTHO05D002407 1.1e-74 284.3 320 55.9
Prupe.1G159200 Prunus persica HOM05D002342 ORTHO05D002407 1.6e-73 280.4 299 55.2
FAN15G0433 Fragaria x ananassa HOM05D002342 ORTHO05D002407 1.7e-70 270.4 293 55.6
FAN24G1108 Fragaria x ananassa HOM05D002342 ORTHO05D002407 2.4e-69 266.5 293 54.3
Actinidia35855 Actinidia chinensis HOM05D002342 ORTHO05D002407 7.0e-69 265.0 297 52.5
FvH4_2g13620 Fragaria vesca HOM05D002342 ORTHO05D002407 9.1e-69 264.6 293 54.3
MD04G1012900 Malus domestica HOM05D002342 ORTHO05D002407 2.9e-67 259.6 303 51.8
Dinv38212 Davidia involucrata HOM05D002342 ORTHO05D002407 8.5e-67 258.1 297 54.2
TWI09G0668 Tripterygium wilfordii HOM05D002342 ORTHO05D002407 4.2e-66 255.8 180 69.4
QL05p014269 Quercus lobata HOM05D002342 ORTHO05D002407 7.2e-66 255.0 202 63.9
Manes.03G146000 Manihot esculenta HOM05D002342 ORTHO05D002407 2.1e-65 253.4 201 62.7
Prupe.1G159100 Prunus persica HOM05D002342 ORTHO05D002407 4.7e-65 252.3 317 48.6
MBI04_g21151_MAGBIO Magnolia biondii HOM05D002342 ORTHO05D002407 8.0e-65 251.5 191 63.9
QL05p014602 Quercus lobata HOM05D002342 ORTHO05D002407 8.0e-65 251.5 206 61.7
TAR365G0670 Trochodendron aralioides HOM05D002342 ORTHO05D002407 1.0e-64 251.1 291 50.2
FAN17G0157 Fragaria x ananassa HOM05D002342 ORTHO05D002407 4.0e-64 249.2 288 49.0
Nitab4.5_0000401g0100 Nicotiana tabacum HOM05D002342 ORTHO05D002407 1.2e-63 247.7 253 56.5
TAR365G0690 Trochodendron aralioides HOM05D002342 ORTHO05D002407 1.2e-63 247.7 292 50.0
Nn1g07933 Nelumbo nucifera HOM05D002342 ORTHO05D002407 1.5e-63 247.3 303 47.9
Lj6C526T4 Lonicera japonica HOM05D002342 ORTHO05D002407 2.0e-63 246.9 177 67.2
GSVIVG01020920001 Vitis vinifera HOM05D002342 ORTHO05D002407 2.0e-63 246.9 304 51.6
Migut.G00912 Erythranthe guttata HOM05D002342 ORTHO05D002407 5.7e-63 245.4 295 48.8
DCAR_002789 Daucus carota HOM05D002342 ORTHO05D002407 9.7e-63 244.6 292 52.7
Actinidia23411 Actinidia chinensis HOM05D002342 ORTHO05D002407 1.3e-62 244.2 203 63.5
QL05p014243 Quercus lobata HOM05D002342 ORTHO05D002407 2.8e-62 243.0 197 63.5
QL05p014435 Quercus lobata HOM05D002342 ORTHO05D002407 2.8e-62 243.0 197 63.5
Cpa.g.c27575.1 Carica papaya HOM05D002342 ORTHO05D002407 3.7e-62 242.7 184 65.8
RcHm_v2.0_Chr4g0414341 Rosa chinensis HOM05D002342 ORTHO05D002407 3.7e-62 242.7 241 56.8
CSS0000956 Camellia sinensis var. sinensis HOM05D002342 ORTHO05D002407 6.3e-62 241.9 205 61.5
Ciclev10004121m.g Citrus clementina HOM05D002342 ORTHO05D002407 6.3e-62 241.9 317 51.1
Lj6A526G34 Lonicera japonica HOM05D002342 ORTHO05D002407 6.3e-62 241.9 205 61.5
Hma1.2p1_0383F.1_g140360 Hydrangea macrophylla HOM05D002342 ORTHO05D002407 1.4e-61 240.7 290 48.3
PGR083G1386 Punica granatum HOM05D002342 ORTHO05D002407 1.8e-61 240.4 293 51.9
DCAR_030811 Daucus carota HOM05D002342 ORTHO05D002407 7.0e-61 238.4 295 47.8
Atru.chr4.1623 Acer truncatum HOM05D002342 ORTHO05D002407 9.1e-61 238.0 205 62.0
Ca_17971_v3 Cicer arietinum L. HOM05D002342 ORTHO05D002407 2.0e-60 236.9 179 67.0
Hund05344 Selenicereus undatus HOM05D002342 ORTHO05D002407 2.0e-60 236.9 302 46.4
Atru.chr4.1628 Acer truncatum HOM05D002342 ORTHO05D002407 4.5e-60 235.7 186 64.0
Rhsim09G0058500 Rhododendron simsii HOM05D002342 ORTHO05D002407 4.5e-60 235.7 179 68.2
Atru.chr4.1618 Acer truncatum HOM05D002342 ORTHO05D002407 1.0e-59 234.6 184 63.0
Oeu055768.2 Olea europaea HOM05D002342 ORTHO05D002407 1.0e-59 234.6 309 48.9
QL05p014183 Quercus lobata HOM05D002342 ORTHO05D002407 1.3e-59 234.2 177 66.7
RcHm_v2.0_Chr4g0414351 Rosa chinensis HOM05D002342 ORTHO05D002407 1.7e-59 233.8 319 45.5
Migut.N00402 Erythranthe guttata HOM05D002342 ORTHO05D002407 5.0e-59 232.3 307 46.6
ClCG05G003260 Citrullus lanatus HOM05D002342 ORTHO05D002407 1.5e-58 230.7 309 50.2
Sabra16G0200600 Salix brachista HOM05D002342 ORTHO05D002407 1.5e-58 230.7 185 62.7
Cc03_g08030 Coffea canephora HOM05D002342 ORTHO05D002407 1.9e-58 230.3 310 49.7
Medtr8g085280 Medicago truncatula HOM05D002342 ORTHO05D002407 1.9e-58 230.3 179 65.4
Sc13g0000230 Simmondsia chinensis HOM05D002342 ORTHO05D002407 2.5e-58 229.9 235 51.9
Lj4g0001754 Lotus japonicus HOM05D002342 ORTHO05D002407 4.2e-58 229.2 183 61.7
MD04G1013300 Malus domestica HOM05D002342 ORTHO05D002407 4.2e-58 229.2 236 54.7
FvH4_4g13660 Fragaria vesca HOM05D002342 ORTHO05D002407 7.2e-58 228.4 309 47.9
Glyma.08G111400 Glycine max HOM05D002342 ORTHO05D002407 2.7e-57 226.5 200 61.5
HanXRQChr02g0059031 Helianthus annuus HOM05D002342 ORTHO05D002407 2.7e-57 226.5 290 48.6
TPR.G11869 Trifolium pratense HOM05D002342 ORTHO05D002407 2.7e-57 226.5 178 65.2
VMungo1127G1482 Vigna mungo HOM05D002342 ORTHO05D002407 3.6e-57 226.1 200 60.5
SHI00028 Sapria himalayana HOM05D002342 ORTHO05D002407 6.1e-57 225.3 269 48.7
ECA233G4700 Erigeron canadensis HOM05D002342 ORTHO05D002407 8.0e-57 224.9 295 48.1
HanXRQChr16g0498001 Helianthus annuus HOM05D002342 ORTHO05D002407 8.0e-57 224.9 247 50.6
Psat7g074440 Pisum sativum HOM05D002342 ORTHO05D002407 1.0e-56 224.6 179 65.4
Potri.001G317200 Populus trichocarpa HOM05D002342 ORTHO05D002407 1.8e-56 223.8 323 46.4
SGA_v2.0_scaffold31G12585 Striga asiatica HOM05D002342 ORTHO05D002407 2.3e-56 223.4 245 51.0
Lsat_1_v5_gn_6_60921 Lactuca sativa HOM05D002342 ORTHO05D002407 6.8e-56 221.9 175 64.0
Lalb_Chr12g0205531 Lupinus albus HOM05D002342 ORTHO05D002407 8.8e-56 221.5 207 57.5
FAN22G0412 Fragaria x ananassa HOM05D002342 ORTHO05D002407 1.2e-55 221.1 309 46.6
Gohir.D02G113900 Gossypium hirsutum HOM05D002342 ORTHO05D002407 1.2e-55 221.1 306 44.4
Gorai.005G129600 Gossypium raimondii HOM05D002342 ORTHO05D002407 1.5e-55 220.7 312 43.9
FAN07G2373 Fragaria x ananassa HOM05D002342 ORTHO05D002407 3.4e-55 219.5 326 44.8
CsaV3_3G010890 Cucumis sativus L. HOM05D002342 ORTHO05D002407 4.4e-55 219.2 293 47.8
Phvul.003G291200 Phaseolus vulgaris HOM05D002342 ORTHO05D002407 5.7e-55 218.8 182 62.1
CANSAT78G2520 Cannabis sativa HOM05D002342 ORTHO05D002407 9.8e-55 218.0 283 45.2
PSO017G5596 Papaver somniferum HOM05D002342 ORTHO05D002407 1.7e-54 217.2 186 58.1
Sopen09g034970 Solanum pennellii HOM05D002342 ORTHO05D002407 2.2e-54 216.9 189 54.5
arahy.Tifrunner.gnm1.ann1.ZGTC82 Arachis hypogaea HOM05D002342 ORTHO05D002407 2.8e-54 216.5 303 46.5
Duzib212G0344 Durio zibethinus HOM05D002342 ORTHO05D002407 2.8e-54 216.5 257 47.9
PSO063G4028 Papaver somniferum HOM05D002342 ORTHO05D002407 6.3e-54 215.3 289 46.7
MD04G1012800 Malus domestica HOM05D002342 ORTHO05D002407 8.3e-54 214.9 325 44.9
Migut.N01843 Erythranthe guttata HOM05D002342 ORTHO05D002407 2.4e-53 213.4 175 60.6
Aqoxy2G03980 Aquilegia oxysepala HOM05D002342 ORTHO05D002407 5.4e-53 212.2 212 50.0
Gohir.A03G095600 Gossypium hirsutum HOM05D002342 ORTHO05D002407 9.1e-53 211.5 299 47.2
Sed0020750 Sechium edule HOM05D002342 ORTHO05D002407 2.0e-52 210.3 301 45.8
unitig_8.g4999 Utricularia gibba HOM05D002342 ORTHO05D002407 2.0e-52 210.3 184 57.6
Aa31LG9G3890 Aethionema arabicum HOM05D002342 ORTHO05D002407 2.7e-52 209.9 187 54.0
Thecc.04G199700 Theobroma cacao HOM05D002342 ORTHO05D002407 2.7e-52 209.9 292 46.6
FAN12G2750 Fragaria x ananassa HOM05D002342 ORTHO05D002407 5.9e-52 208.8 164 64.6
Lsat_1_v5_gn_6_60880 Lactuca sativa HOM05D002342 ORTHO05D002407 1.3e-51 207.6 177 55.4
Hma1.2p1_0383F.1_g140570 Hydrangea macrophylla HOM05D002342 ORTHO05D002407 1.7e-51 207.2 236 48.7
ECA233G6204 Erigeron canadensis HOM05D002342 ORTHO05D002407 2.5e-50 203.4 183 54.6
MELO3C006307.2 Cucumis melo HOM05D002342 ORTHO05D002407 3.3e-50 203.0 188 57.4
Carub.0007s2871 Capsella rubella HOM05D002342 ORTHO05D002407 9.5e-50 201.4 182 53.3
Ah.14g086370 Amaranthus hybridus HOM05D002342 ORTHO05D002407 1.2e-49 201.1 260 43.5
AL7G42760 Arabidopsis lyrata HOM05D002342 ORTHO05D002407 2.1e-49 200.3 182 53.3
AT4G13750 Arabidopsis thaliana HOM05D002342 ORTHO05D002407 3.6e-49 199.5 180 54.4
Sp7g11520 Schrenkiella parvula HOM05D002342 ORTHO05D002407 3.6e-49 199.5 182 53.8
BcaB04g17657 Brassica carinata HOM05D002342 ORTHO05D002407 8.0e-49 198.4 192 50.0
HanXRQChr11g0339061 Helianthus annuus HOM05D002342 ORTHO05D002407 1.0e-48 198.0 187 54.5
CARHR219530 Cardamine hirsuta HOM05D002342 ORTHO05D002407 2.3e-48 196.8 183 54.1
BraA08t32682Z Brassica rapa HOM05D002342 ORTHO05D002407 3.0e-48 196.4 186 52.2
Zm00001eb061370 Zea mays HOM05D002342 ORTHO05D002407 3.0e-48 196.4 247 44.9
THA.LOC104804807 Tarenaya hassleriana HOM05D002342 ORTHO05D002407 5.2e-48 195.7 199 49.2
Thhalv10024181m.g Eutrema salsugineum HOM05D002342 ORTHO05D002407 6.8e-48 195.3 182 52.2
VMungo1383G2708 Vigna mungo HOM05D002342 ORTHO05D002407 1.2e-47 194.5 202 55.0
BcaC07g37335 Brassica carinata HOM05D002342 ORTHO05D002407 1.5e-47 194.1 193 51.3
C08p07740 Brassica napus HOM05D002342 ORTHO05D002407 1.5e-47 194.1 193 51.3
BolC8t47622H Brassica oleracea HOM05D002342 ORTHO05D002407 1.5e-47 194.1 193 51.3
A08p06660 Brassica napus HOM05D002342 ORTHO05D002407 3.4e-47 193.0 186 51.6
AUR62020836 Chenopodium quinoa HOM05D002342 ORTHO05D002407 4.9e-46 189.1 256 43.0
Os03g0803800 Oryza sativa ssp. japonica HOM05D002342 ORTHO05D002407 6.3e-46 188.7 174 52.9
Lj6A525G37 Lonicera japonica HOM05D002342 ORTHO05D002407 1.8e-45 187.2 129 67.4
Lj6C522G10 Lonicera japonica HOM05D002342 ORTHO05D002407 4.1e-45 186.0 215 50.2
Oeu054535.1 Olea europaea HOM05D002342 ORTHO05D002407 4.1e-45 186.0 129 68.2
BcaB07g34075 Brassica carinata HOM05D002342 ORTHO05D002407 5.4e-45 185.7 180 53.3
COL.COLO4_20180 Corchorus olitorius HOM05D002342 ORTHO05D002407 5.4e-45 185.7 206 45.6
Migut.N01844 Erythranthe guttata HOM05D002342 ORTHO05D002407 5.4e-45 185.7 174 55.7
A06p05320 Brassica napus HOM05D002342 ORTHO05D002407 7.0e-45 185.3 198 51.5
BcaB07g34076 Brassica carinata HOM05D000444 ORTHO05D000489 9.2e-45 184.9 174 55.2
Oeu054534.1 Olea europaea HOM05D002342 ORTHO05D002407 9.2e-45 184.9 129 67.4
BolC5t29395H Brassica oleracea HOM05D002342 ORTHO05D002407 1.6e-44 184.1 180 52.2
CARHR008150 Cardamine hirsuta HOM05D002342 ORTHO05D002407 1.6e-44 184.1 178 50.0
AUR62018583 Chenopodium quinoa HOM05D002342 ORTHO05D002407 1.6e-44 184.1 178 50.0
C05p06400 Brassica napus HOM05D002342 ORTHO05D002407 2.7e-44 183.3 208 49.5
Peaxi162Scf00047g00342 Petunia axillaris HOM05D002342 ORTHO05D002407 2.7e-44 183.3 300 42.7
PSO063G7363 Papaver somniferum HOM05D002342 ORTHO05D002407 3.5e-44 183.0 316 37.7
BraA06t23740Z Brassica rapa HOM05D002342 ORTHO05D002407 4.5e-44 182.6 174 54.6
AL1G18700 Arabidopsis lyrata HOM05D002342 ORTHO05D002407 7.8e-44 181.8 173 53.2
Thhalv10006953m.g Eutrema salsugineum HOM05D002342 ORTHO05D002407 1.7e-43 180.6 236 45.8
FvH4_4g13620 Fragaria vesca HOM05D002342 ORTHO05D002407 1.7e-43 180.6 288 41.7
Sp1g06930 Schrenkiella parvula HOM05D002342 ORTHO05D002407 2.3e-43 180.3 183 49.2
PSO017G1666 Papaver somniferum HOM05D002342 ORTHO05D002407 5.0e-43 179.1 303 38.0
Eucgr.H02758 Eucalyptus grandis HOM05D002342 ORTHO05D002407 8.6e-43 178.3 185 50.3
AT1G08300 Arabidopsis thaliana HOM05D002342 ORTHO05D002407 1.1e-42 177.9 252 41.7
Eucgr.H02752 Eucalyptus grandis HOM05D002342 ORTHO05D002407 1.1e-42 177.9 199 47.7
Carub.0001s0765 Capsella rubella HOM05D002342 ORTHO05D002407 4.3e-42 176.0 178 48.3
vmacro00455 Vaccinium macrocarpon HOM05D002342 ORTHO05D002407 2.3e-40 170.2 113 74.3
Lj6A517T27 Lonicera japonica HOM05D002342 ORTHO05D002407 3.1e-40 169.9 117 67.5
HPP92_020882 Vanilla planifolia HOM05D002342 ORTHO05D002407 3.7e-38 162.9 210 44.3
SEGI_11248 Sequoiadendron giganteum HOM05D002342 ORTHO05D002407 4.9e-38 162.5 206 42.2
Lj6C516G5 Lonicera japonica HOM05D002342 ORTHO05D002407 6.4e-38 162.2 107 72.9
ATR0829G161 Amborella trichopoda HOM05D002342 ORTHO05D002407 3.2e-37 159.8 276 37.7
EL10Ac3g07477 Beta vulgaris HOM05D002342 ORTHO05D002407 2.7e-36 156.8 241 39.8
CAN.G1333.6 Capsicum annuum HOM05D002342 ORTHO05D002407 1.5e-31 141.0 166 46.4
Pp3c21_20720 Physcomitrium patens HOM05D002342 ORTHO05D002407 3.4e-31 139.8 180 40.0
HPP92_003883 Vanilla planifolia HOM05D002342 ORTHO05D002407 3.3e-26 123.2 177 39.0
Mapoly0105s0052 Marchantia polymorpha HOM05D002342 ORTHO05D002407 1.1e-24 118.2 210 37.6
FAN22G1019 Fragaria x ananassa HOM05D002342 ORTHO05D002407 1.1e-16 91.7 74 59.5
PGSC0003DMG401026419 Solanum tuberosum HOM05D002342 ORTHO05D002407 5.2e-16 89.4 159 37.1
AagrBONN_evm.TU.Sc2ySwM_228.1730 Anthoceros agrestis HOM05D002342 ORTHO05D002407 1.7e-14 84.3 128 32.0
Lj6A516T56 Lonicera japonica HOM05D002342 ORTHO05D002407 1.4e-13 81.3 100 49.0
vmacro00456 Vaccinium macrocarpon HOM05D002342 ORTHO05D002407 1.9e-13 80.9 179 34.1
Lj6P517T17 Lonicera japonica HOM05D002342 ORTHO05D002407 2.4e-13 80.5 109 45.0
Lj6C516T2 Lonicera japonica HOM05D002342 ORTHO05D002407 4.2e-13 79.7 170 38.2
CBR_g6414 Chara braunii HOM05D002342 ORTHO05D002407 1.3e-09 68.2 196 25.0
Lj6C524T11 Lonicera japonica HOM05D002342 ORTHO05D002407 8.1e-09 65.5 50 62.0
Prupe.1G358100 Prunus persica HOM05D002342 ORTHO05D002407 1.3e-06 58.2 46 60.9
Cfa014942 Carpinus fangiana HOM05D002342 ORTHO05D002407 2.2e-06 57.4 41 65.9
Cre14.g608150 Chlamydomonas reinhardtii HOM05D002342 ORTHO05D002407 3.8e-06 56.6 68 38.2
Cre14.g608200 Chlamydomonas reinhardtii HOM05D002342 ORTHO05D002407 3.8e-06 56.6 68 38.2


User provided reference genes

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