Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.01G113800 Carya illinoinensis HOM05D005839 ORTHO05D005686 0.0e+00 2248.0 1180 100.0
QL06p027171 Quercus lobata HOM05D005839 ORTHO05D005686 0.0e+00 1193.7 1195 59.2
Haze_11680 Corylus avellana HOM05D005839 ORTHO05D005686 0.0e+00 1164.8 1267 55.8
Thecc.04G191800 Theobroma cacao HOM05D005839 ORTHO05D005686 7.5e-167 592.4 1208 38.7
Potri.014G146200 Populus trichocarpa HOM05D005839 ORTHO05D005686 6.2e-161 572.8 1299 38.0
MD04G1021500 Malus domestica HOM05D005839 ORTHO05D005686 7.5e-159 565.8 1248 38.1
Prupe.1G170500 Prunus persica HOM05D005839 ORTHO05D005686 4.6e-156 556.6 1223 37.3
FAN12G3285 Fragaria x ananassa HOM05D005839 ORTHO05D005686 3.2e-149 533.9 1275 37.0
FvH4_4g12870 Fragaria vesca HOM05D005839 ORTHO05D005686 6.0e-148 529.6 1275 36.9
RcHm_v2.0_Chr4g0412531 Rosa chinensis HOM05D005839 ORTHO05D005686 7.8e-148 529.3 1333 36.1
Potri.002G235900 Populus trichocarpa HOM05D005839 ORTHO05D005686 5.1e-147 526.6 1210 36.0
FAN17G1799 Fragaria x ananassa HOM05D005839 ORTHO05D005686 1.9e-146 524.6 1345 36.1
Manes.05G199100 Manihot esculenta HOM05D005839 ORTHO05D005686 9.9e-143 512.3 1231 36.1
Sabra14G0109900 Salix brachista HOM05D005839 ORTHO05D005686 1.4e-141 508.4 1285 35.8
Ciclev10004236m.g Citrus clementina HOM05D005839 ORTHO05D005686 2.5e-138 497.7 1198 34.7
Duzib268G0552 Durio zibethinus HOM05D005839 ORTHO05D005686 3.3e-138 497.3 1209 35.3
Glyma.05G150200 Glycine max HOM05D005839 ORTHO05D005686 4.8e-137 493.4 1227 35.8
Phvul.003G048600 Phaseolus vulgaris HOM05D005839 ORTHO05D005686 3.5e-124 450.7 1237 33.4
Sabra02G0179700 Salix brachista HOM05D005839 ORTHO05D005686 7.9e-124 449.5 1209 34.2
VMungo0251G1575 Vigna mungo HOM05D005839 ORTHO05D005686 4.3e-122 443.7 1240 32.6
arahy.Tifrunner.gnm1.ann1.SAUI5N Arachis hypogaea HOM05D005839 ORTHO05D005686 2.4e-120 438.0 1235 33.9
Actinidia28516 Actinidia chinensis HOM05D005839 ORTHO05D005686 4.0e-120 437.2 1203 32.3
arahy.Tifrunner.gnm1.ann1.3YD71H Arachis hypogaea HOM05D005839 ORTHO05D005686 4.9e-118 430.3 1217 33.8
Glyma.08G107100 Glycine max HOM05D005839 ORTHO05D005686 5.5e-117 426.8 1214 33.3
TWI53G2144 Tripterygium wilfordii HOM05D005839 ORTHO05D005686 1.3e-115 422.2 1189 33.2
GSVIVG01031570001 Vitis vinifera HOM05D005839 ORTHO05D005686 1.8e-115 421.8 1164 34.4
COL.COLO4_04260 Corchorus olitorius HOM05D005839 ORTHO05D005686 1.9e-114 418.3 1179 34.7
Lj4g0005413 Lotus japonicus HOM05D005839 ORTHO05D005686 8.2e-113 412.9 1237 34.1
TAR636G1565 Trochodendron aralioides HOM05D005839 ORTHO05D005686 9.0e-112 409.5 1216 32.6
TAR636G0994 Trochodendron aralioides HOM05D005839 ORTHO05D005686 5.9e-111 406.8 1215 33.0
FAN07G0261 Fragaria x ananassa HOM05D005839 ORTHO05D005686 2.2e-110 404.8 1184 34.5
CSS0003065 Camellia sinensis var. sinensis HOM05D005839 ORTHO05D005686 8.4e-110 402.9 1198 33.1
Actinidia35832 Actinidia chinensis HOM05D005839 ORTHO05D005686 1.4e-104 385.6 1170 31.9
ClCG05G007080 Citrullus lanatus HOM05D005839 ORTHO05D005686 1.2e-100 372.5 1250 30.6
Eucgr.H02631 Eucalyptus grandis HOM05D005839 ORTHO05D005686 1.0e-99 369.4 1206 31.2
Atru.chr3.1776 Acer truncatum HOM05D005839 ORTHO05D005686 3.1e-96 357.8 1015 33.3
Gorai.006G225000 Gossypium raimondii HOM05D005839 ORTHO05D005686 1.2e-95 355.9 1192 31.9
MELO3C006781.2 Cucumis melo HOM05D005839 ORTHO05D005686 5.9e-95 353.6 1256 30.7
Duzib151G0277 Durio zibethinus HOM05D005839 ORTHO05D005686 6.1e-92 343.6 597 42.5
Gohir.D09G201300 Gossypium hirsutum HOM05D005839 ORTHO05D005686 7.9e-92 343.2 1191 31.3
Cpa.g.sc157.17 Carica papaya HOM05D005839 ORTHO05D005686 8.8e-91 339.7 844 35.7
Peaxi162Scf00286g00911 Petunia axillaris HOM05D005839 ORTHO05D005686 2.2e-89 335.1 1194 30.1
Sed0009973 Sechium edule HOM05D005839 ORTHO05D005686 8.2e-89 333.2 1250 30.4
CsaV3_3G015820 Cucumis sativus L. HOM05D005839 ORTHO05D005686 2.4e-88 331.6 1212 30.0
Medtr8g081010 Medicago truncatula HOM05D005839 ORTHO05D005686 5.0e-86 323.9 1196 29.5
PGR083G0592 Punica granatum HOM05D005839 ORTHO05D005686 1.5e-85 322.4 1226 31.1
CAN.G1684.4 Capsicum annuum HOM05D005839 ORTHO05D005686 9.4e-85 319.7 1184 30.1
Gohir.D02G113200 Gossypium hirsutum HOM05D005839 ORTHO05D005686 2.7e-84 318.2 1113 30.5
Ca_18007_v3 Cicer arietinum L. HOM05D005839 ORTHO05D005686 4.7e-84 317.4 1219 28.8
CANSAT78G1593 Cannabis sativa HOM05D005839 ORTHO05D005686 1.0e-83 316.2 1190 32.8
Gorai.005G128100 Gossypium raimondii HOM05D005839 ORTHO05D005686 8.8e-83 313.2 1106 29.9
Gohir.A09G207800 Gossypium hirsutum HOM05D005839 ORTHO05D005686 2.0e-82 312.0 1193 30.1
Cc03_g09160 Coffea canephora HOM05D005839 ORTHO05D005686 3.3e-82 311.2 1249 29.5
Gohir.A10G130200 Gossypium hirsutum HOM05D005839 ORTHO05D005686 2.8e-81 308.1 1190 29.7
PGSC0003DMG401021870 Solanum tuberosum HOM05D005839 ORTHO05D005686 1.4e-80 305.8 1191 31.3
Dinv32166 Davidia involucrata HOM05D005839 ORTHO05D005686 9.1e-80 303.1 742 34.8
Solyc09g092550.4 Solanum lycopersicum HOM05D005839 ORTHO05D005686 7.7e-79 300.1 1198 29.5
Sed0018641 Sechium edule HOM05D005839 ORTHO05D005686 1.0e-78 299.7 1200 28.1
FAN22G0032 Fragaria x ananassa HOM05D005839 ORTHO05D005686 1.7e-78 298.9 413 49.6
Nitab4.5_0000037g0160 Nicotiana tabacum HOM05D005839 ORTHO05D005686 2.9e-78 298.1 1202 28.7
Sopen09g035450 Solanum pennellii HOM05D005839 ORTHO05D005686 1.9e-77 295.4 1210 30.2
Gorai.011G150900 Gossypium raimondii HOM05D005839 ORTHO05D005686 1.6e-76 292.4 1191 29.7
Gohir.D10G136100 Gossypium hirsutum HOM05D005839 ORTHO05D005686 1.3e-73 282.7 1189 28.8
TAR365G0636 Trochodendron aralioides HOM05D005839 ORTHO05D005686 1.3e-73 282.7 626 38.3
Oeu049072.1 Olea europaea HOM05D005839 ORTHO05D005686 5.4e-72 277.3 1170 29.9
TPR.G11806 Trifolium pratense HOM05D004269 ORTHO05D007106 6.5e-70 270.4 1207 27.8
Hund24442 Selenicereus undatus HOM05D005839 ORTHO05D005686 3.0e-67 261.5 1206 29.1
Hma1.2p1_1457F.1_g284680 Hydrangea macrophylla HOM05D005839 ORTHO05D005686 5.6e-61 240.7 318 49.7
Gohir.A03G095700 Gossypium hirsutum HOM05D005839 ORTHO05D005686 6.1e-60 237.3 1088 28.0
arahy.Tifrunner.gnm1.ann1.62570H Arachis hypogaea HOM05D005839 ORTHO05D005686 6.8e-59 233.8 1202 27.0
Hma1.2p1_0984F.1_g244280 Hydrangea macrophylla HOM05D005839 ORTHO05D005686 4.4e-58 231.1 481 38.7
MSTRG.4261 Avicennia marina HOM05D005839 ORTHO05D005686 2.0e-55 222.2 1204 27.1
arahy.Tifrunner.gnm1.ann1.SDG4EV Arachis hypogaea HOM05D005839 ORTHO05D005686 3.5e-55 221.5 236 55.1
Lj3A356G9 Lonicera japonica HOM05D005839 ORTHO05D005686 7.8e-55 220.3 844 30.8
ATR1147G004 Amborella trichopoda HOM05D005839 ORTHO05D005686 3.0e-54 218.4 1271 26.9
EL10Ac3g07436 Beta vulgaris HOM05D005839 ORTHO05D005686 3.9e-54 218.0 1188 27.3
AUR62018535 Chenopodium quinoa HOM05D005839 ORTHO05D005686 2.5e-53 215.3 1209 26.8
arahy.Tifrunner.gnm1.ann1.H8QNW8 Arachis hypogaea HOM05D005839 ORTHO05D005686 4.3e-53 214.5 1200 26.3
SalBow2G2330 Salvia bowleyana HOM05D005839 ORTHO05D005686 1.5e-50 206.1 1216 27.3
AUR62020882 Chenopodium quinoa HOM05D005839 ORTHO05D005686 4.4e-50 204.5 1213 26.9
SalBow2G2888 Salvia bowleyana HOM05D005839 ORTHO05D005686 4.4e-50 204.5 1216 27.3
Ah.04g149590 Amaranthus hybridus HOM05D005839 ORTHO05D005686 7.5e-50 203.8 1212 25.7
PGSC0003DMG400021878 Solanum tuberosum HOM05D005839 ORTHO05D005686 3.7e-49 201.4 738 32.9
Lj3A375G30 Lonicera japonica HOM05D005839 ORTHO05D005686 4.1e-48 198.0 917 29.1
Psat7g076360 Pisum sativum HOM05D005839 ORTHO05D005686 4.1e-48 198.0 712 29.8
Atru.chr3.1775 Acer truncatum HOM05D005839 ORTHO05D005686 1.0e-46 193.4 172 63.4
DCAR_005282 Daucus carota HOM05D005839 ORTHO05D005686 1.5e-42 179.5 1121 26.1
Oeu050722.1 Olea europaea HOM05D005839 ORTHO05D009229 1.5e-42 179.5 231 49.4
Lalb_Chr12g0205781 Lupinus albus HOM05D005839 ORTHO05D005686 2.0e-42 179.1 620 30.2
Duzib151G0492 Durio zibethinus HOM05D005839 ORTHO05D005686 1.3e-41 176.4 427 33.0
Sc13g0000540 Simmondsia chinensis HOM05D005839 ORTHO05D005686 8.3e-41 173.7 778 29.7
ECA233G5455 Erigeron canadensis HOM05D005839 ORTHO05D005686 1.7e-38 166.0 390 34.9
Cpa.g.sc157.15 Carica papaya HOM05D005839 ORTHO05D005686 1.9e-37 162.5 685 27.9
Lalb_Chr07g0186981 Lupinus albus HOM05D005839 ORTHO05D005686 5.6e-37 161.0 224 45.5
MSTRG.9771 Avicennia marina HOM05D005839 ORTHO05D005686 3.1e-35 155.2 266 42.5
arahy.Tifrunner.gnm1.ann1.52QBHW Arachis hypogaea HOM05D005839 ORTHO05D005686 4.0e-35 154.8 139 58.3
HanXRQChr07g0186001 Helianthus annuus HOM05D005839 ORTHO05D005686 4.6e-31 141.4 292 39.7
Migut.G00951 Erythranthe guttata HOM05D005839 ORTHO05D005686 5.1e-30 137.9 264 36.4
Lj6g0025267 Lotus japonicus HOM05D005839 ORTHO05D005686 6.6e-30 137.5 545 30.3
arahy.Tifrunner.gnm1.ann1.98ICAR Arachis hypogaea HOM05D000340 ORTHO05D000821 1.5e-29 136.3 129 55.8
Aqoxy2G04047 Aquilegia oxysepala HOM05D005839 ORTHO05D005686 2.5e-29 135.6 1197 23.8
Ca_16430_v3 Cicer arietinum L. HOM05D005839 ORTHO05D005686 3.6e-28 131.7 147 51.0
Hund19024 Selenicereus undatus HOM05D005839 ORTHO05D005686 4.0e-27 128.3 591 27.4
arahy.Tifrunner.gnm1.ann1.Q2NVSC Arachis hypogaea HOM05D005839 ORTHO05D000011 5.2e-27 127.9 95 62.1
Cpa.g.sc157.18 Carica papaya HOM05D005839 ORTHO05D005686 1.2e-26 126.7 152 47.4
HanXRQChr02g0058441 Helianthus annuus HOM05D005839 ORTHO05D005686 1.2e-26 126.7 265 37.4
Lsat_1_v5_gn_6_58881 Lactuca sativa HOM05D005839 ORTHO05D005686 9.9e-26 123.6 270 38.1
ECA233G2442 Erigeron canadensis HOM05D005839 ORTHO05D005686 5.1e-22 111.3 124 46.0
CARHR220270 Cardamine hirsuta HOM05D010750 ORTHO05D005686 9.6e-21 107.1 239 33.1
Nn8g41260 Nelumbo nucifera HOM05D005839 ORTHO05D005686 1.3e-20 106.7 342 32.2
THA.LOC104808672 Tarenaya hassleriana HOM05D010750 ORTHO05D005686 1.8e-19 102.8 256 34.0
Sp7g12060 Schrenkiella parvula HOM05D010750 ORTHO05D005686 3.1e-19 102.1 271 31.7
ECA238G4483 Erigeron canadensis HOM05D000006 ORTHO05D000001 6.9e-19 100.9 727 25.6
Lsat_1_v5_gn_2_47881 Lactuca sativa HOM05D005839 ORTHO05D005686 1.2e-18 100.1 470 26.2
FvH4_1g13820 Fragaria vesca HOM05D005839 ORTHO05D005686 5.8e-18 97.8 55 72.7
Glyma.18G003300 Glycine max HOM05D005839 ORTHO05D005686 5.8e-18 97.8 584 25.5
BcaC02g09348 Brassica carinata HOM05D010750 ORTHO05D005686 2.4e-16 92.4 184 35.3
C04p41620 Brassica napus HOM05D010750 ORTHO05D005686 2.4e-16 92.4 184 35.3
AT4G14200 Arabidopsis thaliana HOM05D010750 ORTHO05D005686 9.3e-16 90.5 549 26.0
Aa31LG9G3190 Aethionema arabicum HOM05D010750 ORTHO05D005686 1.2e-15 90.1 163 41.1
A08p24270 Brassica napus HOM05D010750 ORTHO05D005686 1.2e-15 90.1 146 39.7
arahy.Tifrunner.gnm1.ann1.CIA2YT Arachis hypogaea HOM05D005839 ORTHO05D005686 2.7e-15 89.0 77 51.9
BcaNung05575 Brassica carinata HOM05D010750 ORTHO05D005686 4.6e-15 88.2 118 41.5
C03p76940 Brassica napus HOM05D010750 ORTHO05D005686 7.9e-15 87.4 202 35.1
AL7G42170 Arabidopsis lyrata HOM05D010750 ORTHO05D005686 1.8e-14 86.3 135 40.7
BolC4t25741H Brassica oleracea HOM05D010750 ORTHO05D005686 2.3e-14 85.9 177 33.9
CDE05G0606 Ceratophyllum demersum HOM05D062397 ORTHO05D043856 3.9e-14 85.1 193 33.7
BolC3t19949H Brassica oleracea HOM05D010750 ORTHO05D005686 5.1e-14 84.7 201 33.3
Carub.0007s2819 Capsella rubella HOM05D010750 ORTHO05D005686 6.7e-14 84.3 154 39.0
Thhalv10024466m.g Eutrema salsugineum HOM05D010750 ORTHO05D005686 6.7e-14 84.3 594 25.4
Lalb_Chr07g0186961 Lupinus albus HOM05D005839 ORTHO05D005686 9.6e-13 80.5 116 41.4
Lalb_Chr12g0205771 Lupinus albus HOM05D005839 ORTHO05D005686 2.4e-11 75.9 57 57.9
SEGI_24376 Sequoiadendron giganteum HOM05D005839 ORTHO05D005686 4.0e-11 75.1 63 47.6
A04p07940 Brassica napus HOM05D010750 ORTHO05D005686 6.9e-11 74.3 499 24.8
QL06p027203 Quercus lobata HOM05D034196 ORTHO05D005686 9.0e-11 73.9 78 46.2
BraA04t16484Z Brassica rapa HOM05D010750 ORTHO05D005686 3.4e-10 72.0 502 24.5
PSO063G0130 Papaver somniferum HOM05D037519 ORTHO05D037279 9.9e-10 70.5 781 25.4
Glyma.11G253800 Glycine max HOM05D005839 ORTHO05D005686 1.3e-09 70.1 350 29.1
Actinidia24785 Actinidia chinensis HOM05D005839 ORTHO05D005686 4.9e-09 68.2 299 25.8
PSO017G5422 Papaver somniferum HOM05D037519 ORTHO05D037279 6.4e-09 67.8 776 25.4
Mapoly0008s0012 Marchantia polymorpha HOM05D005839 ORTHO05D005686 6.0e-07 61.2 31 67.7
Actinidia04544 Actinidia chinensis HOM05D005839 ORTHO05D005686 1.0e-06 60.5 69 52.2
BcaC01g00210 Brassica carinata HOM05D010750 ORTHO05D005686 1.8e-06 59.7 653 22.8


User provided reference genes

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