Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.01G108100 Carya illinoinensis HOM05D005211 ORTHO05D006148 6.6e-79 297.4 156 100.0
QL10p044103 Quercus lobata HOM05D005211 ORTHO05D006148 9.0e-52 207.2 155 74.2
Cfa008551 Carpinus fangiana HOM05D005211 ORTHO05D006148 4.0e-44 181.8 158 67.1
CiPaw.02G059600 Carya illinoinensis HOM05D005211 ORTHO05D006148 6.5e-42 174.5 157 65.0
Haze_11077 Corylus avellana HOM05D005211 ORTHO05D006148 2.4e-36 156.0 130 68.5
Manes.11G114000 Manihot esculenta HOM05D005211 ORTHO05D006148 5.9e-35 151.4 147 57.8
Prupe.1G178500 Prunus persica HOM05D005211 ORTHO05D006148 9.4e-33 144.1 160 53.8
FAN07G0144 Fragaria x ananassa HOM05D005211 ORTHO05D006148 1.4e-31 140.2 157 51.6
TAR636G0814 Trochodendron aralioides HOM05D005211 ORTHO05D006148 1.4e-31 140.2 155 53.5
FAN22G0070 Fragaria x ananassa HOM05D005211 ORTHO05D006148 3.0e-31 139.0 157 51.0
Potri.002G232500 Populus trichocarpa HOM05D005211 ORTHO05D006148 6.7e-31 137.9 160 57.5
FAN12G3367 Fragaria x ananassa HOM05D005211 ORTHO05D006148 4.3e-30 135.2 160 51.2
FAN12G0052 Fragaria x ananassa HOM05D005211 ORTHO05D006148 1.7e-29 133.3 159 50.3
RcHm_v2.0_Chr4g0409781 Rosa chinensis HOM05D005211 ORTHO05D006148 3.7e-29 132.1 156 49.4
TAR365G0119 Trochodendron aralioides HOM05D005211 ORTHO05D006148 6.3e-29 131.3 151 52.3
Hma1.2p1_0412F.1_g147140 Hydrangea macrophylla HOM05D005211 ORTHO05D006148 5.3e-28 128.3 113 63.7
CANSAT78G0009 Cannabis sativa HOM05D005211 ORTHO05D006148 9.1e-28 127.5 181 48.1
Eucgr.H00442 Eucalyptus grandis HOM05D005211 ORTHO05D006148 9.1e-28 127.5 144 51.4
Sabra02G0177300 Salix brachista HOM05D005211 ORTHO05D006148 2.0e-27 126.3 146 54.8
Potri.014G149800 Populus trichocarpa HOM05D005211 ORTHO05D006148 2.6e-27 125.9 168 47.6
Nn1g08305 Nelumbo nucifera HOM05D005211 ORTHO05D006148 5.9e-27 124.8 156 49.4
Sabra14G0113200 Salix brachista HOM05D005211 ORTHO05D006148 1.3e-26 123.6 151 50.3
Gohir.D07G203100 Gossypium hirsutum HOM05D005211 ORTHO05D006148 3.2e-25 119.0 158 47.5
Gohir.A07G196700 Gossypium hirsutum HOM05D005211 ORTHO05D006148 7.2e-25 117.9 158 46.8
Gorai.001G228500 Gossypium raimondii HOM05D005211 ORTHO05D006148 9.4e-25 117.5 158 47.5
Oeu003658.1 Olea europaea HOM05D005211 ORTHO05D006148 1.6e-24 116.7 156 43.6
Eucgr.H00724 Eucalyptus grandis HOM05D005211 ORTHO05D006148 2.1e-24 116.3 166 42.2
MD05G1158800 Malus domestica HOM05D005211 ORTHO05D006148 2.7e-24 115.9 158 48.7
CDE07G0882 Ceratophyllum demersum HOM05D005211 ORTHO05D006148 4.7e-24 115.2 148 46.6
MELO3C026134.2 Cucumis melo HOM05D005211 ORTHO05D006148 4.7e-24 115.2 147 46.9
MD10G1151700 Malus domestica HOM05D005211 ORTHO05D006148 6.1e-24 114.8 156 48.1
TWI63G1319 Tripterygium wilfordii HOM05D005211 ORTHO05D006148 1.0e-23 114.0 155 43.9
Aqoxy2G03955 Aquilegia oxysepala HOM05D005211 ORTHO05D006148 1.4e-23 113.6 152 46.7
Duzib138G1875 Durio zibethinus HOM05D005211 ORTHO05D006148 1.8e-23 113.2 163 44.8
Duzib133G1390 Durio zibethinus HOM05D005211 ORTHO05D006148 3.9e-23 112.1 165 42.4
Sed0015684 Sechium edule HOM05D005211 ORTHO05D006148 3.9e-23 112.1 167 41.9
MBI07_g35368_MAGBIO Magnolia biondii HOM05D005211 ORTHO05D006148 5.1e-23 111.7 135 53.3
Oeu057829.1 Olea europaea HOM05D005211 ORTHO05D006148 6.7e-23 111.3 144 46.5
TAR633G2277 Trochodendron aralioides HOM05D005211 ORTHO05D006148 6.7e-23 111.3 141 48.2
Manes.13G054600 Manihot esculenta HOM05D005211 ORTHO05D006148 1.1e-22 110.5 164 42.1
Gohir.A11G142700 Gossypium hirsutum HOM05D005211 ORTHO05D006148 2.6e-22 109.4 171 40.9
Cpa.g.sc8.70 Carica papaya HOM05D005211 ORTHO05D006148 3.3e-22 109.0 159 45.9
Duzib211G0461 Durio zibethinus HOM05D005211 ORTHO05D006148 3.3e-22 109.0 167 41.9
Gohir.D11G149000 Gossypium hirsutum HOM05D005211 ORTHO05D006148 3.3e-22 109.0 174 40.8
CSS0012153 Camellia sinensis var. sinensis HOM05D005211 ORTHO05D006148 5.7e-22 108.2 152 48.7
CSS0028586 Camellia sinensis var. sinensis HOM05D005211 ORTHO05D006148 5.7e-22 108.2 152 48.7
Prupe.8G190100 Prunus persica HOM05D005211 ORTHO05D006148 5.7e-22 108.2 149 47.0
RcHm_v2.0_Chr6g0282791 Rosa chinensis HOM05D005211 ORTHO05D006148 5.7e-22 108.2 159 45.9
FAN22G0040 Fragaria x ananassa HOM05D005211 ORTHO05D006148 7.4e-22 107.8 107 55.1
FAN27G2625 Fragaria x ananassa HOM05D005211 ORTHO05D006148 7.4e-22 107.8 163 44.2
FAN24G0649 Fragaria x ananassa HOM05D005211 ORTHO05D006148 1.3e-21 107.1 163 44.2
PGR083G0764 Punica granatum HOM05D005211 ORTHO05D006148 2.2e-21 106.3 149 45.0
Gorai.007G159800 Gossypium raimondii HOM05D005211 ORTHO05D006148 2.8e-21 105.9 171 40.4
FAN15G0641 Fragaria x ananassa HOM05D005211 ORTHO05D006148 4.8e-21 105.1 168 45.2
Thecc.01G210700 Theobroma cacao HOM05D005211 ORTHO05D006148 1.1e-20 104.0 150 42.0
CiPaw.13G055500 Carya illinoinensis HOM05D005211 ORTHO05D006148 1.4e-20 103.6 159 44.7
CiPaw.14G044000 Carya illinoinensis HOM05D005211 ORTHO05D006148 1.4e-20 103.6 156 44.9
RcHm_v2.0_Chr6g0282781 Rosa chinensis HOM05D005211 ORTHO05D006148 2.4e-20 102.8 156 46.8
PGR142G0694 Punica granatum HOM05D005211 ORTHO05D006148 4.1e-20 102.1 160 43.1
TWI18G0981 Tripterygium wilfordii HOM05D005211 ORTHO05D006148 4.1e-20 102.1 139 43.9
EL10Ac5g10623 Beta vulgaris HOM05D005211 ORTHO05D006148 5.3e-20 101.7 155 43.2
CDE04G3135 Ceratophyllum demersum HOM05D005211 ORTHO05D006148 5.3e-20 101.7 148 43.9
ClCG08G003780 Citrullus lanatus HOM05D005211 ORTHO05D006148 7.0e-20 101.3 145 42.1
Dinv28809 Davidia involucrata HOM05D005211 ORTHO05D006148 1.2e-19 100.5 150 45.3
COL.COLO4_26568 Corchorus olitorius HOM05D005211 ORTHO05D006148 1.5e-19 100.1 160 41.9
Lsat_1_v5_gn_5_178301 Lactuca sativa HOM05D005211 ORTHO05D006148 2.0e-19 99.8 169 39.1
Lj1P101T27 Lonicera japonica HOM05D005211 ORTHO05D006148 2.6e-19 99.4 159 44.0
PSO675G5714 Papaver somniferum HOM05D005211 ORTHO05D006148 3.5e-19 99.0 166 39.8
FvH4_2g17760 Fragaria vesca HOM05D005211 ORTHO05D006148 4.5e-19 98.6 151 44.4
FAN27G1389 Fragaria x ananassa HOM05D005211 ORTHO05D006148 4.5e-19 98.6 169 45.0
TWI36G1602 Tripterygium wilfordii HOM05D005211 ORTHO05D006148 4.5e-19 98.6 149 43.6
FvH4_2g17750 Fragaria vesca HOM05D005211 ORTHO05D006148 5.9e-19 98.2 169 43.8
FAN24G3081 Fragaria x ananassa HOM05D005211 ORTHO05D006148 5.9e-19 98.2 169 43.8
QL93p0263_0042 Quercus lobata HOM05D005211 ORTHO05D006148 7.7e-19 97.8 141 45.4
Sc17g0001650 Simmondsia chinensis HOM05D005211 ORTHO05D006148 7.7e-19 97.8 142 45.1
Cc01_g16110 Coffea canephora HOM05D005211 ORTHO05D006148 2.2e-18 96.3 149 38.9
Lj2P1117T13 Lonicera japonica HOM05D005211 ORTHO05D006148 5.0e-18 95.1 152 40.8
CANSAT01G0934 Cannabis sativa HOM05D005211 ORTHO05D006148 1.1e-17 94.0 160 40.0
THA.LOC104802290 Tarenaya hassleriana HOM05D005211 ORTHO05D006148 1.4e-17 93.6 151 43.0
CsaV3_6G003020 Cucumis sativus L. HOM05D005211 ORTHO05D006148 1.9e-17 93.2 102 52.9
MD05G1158700 Malus domestica HOM05D005211 ORTHO05D006148 1.9e-17 93.2 163 40.5
Oeu013415.1 Olea europaea HOM05D005211 ORTHO05D006148 7.2e-17 91.3 143 40.6
Actinidia23357 Actinidia chinensis HOM05D005211 ORTHO05D006148 9.4e-17 90.9 137 46.0
Migut.D00738 Erythranthe guttata HOM05D005211 ORTHO05D006148 9.4e-17 90.9 160 38.8
Manes.12G059000 Manihot esculenta HOM05D005211 ORTHO05D006148 1.2e-16 90.5 120 47.5
Prupe.8G190000 Prunus persica HOM05D005211 ORTHO05D006148 1.6e-16 90.1 151 46.4
AUR62028696 Chenopodium quinoa HOM05D005211 ORTHO05D006148 2.1e-16 89.7 147 40.8
MD10G1151600 Malus domestica HOM05D005211 ORTHO05D006148 2.1e-16 89.7 177 39.0
THA.LOC104803428 Tarenaya hassleriana HOM05D005211 ORTHO05D006148 2.1e-16 89.7 149 40.9
Carub.0004s2554 Capsella rubella HOM05D005211 ORTHO05D006148 2.7e-16 89.4 145 42.8
CDE02G4090 Ceratophyllum demersum HOM05D005211 ORTHO05D006148 6.1e-16 88.2 145 40.7
Thhalv10017615m.g Eutrema salsugineum HOM05D005211 ORTHO05D006148 6.1e-16 88.2 139 44.6
Ciclev10016996m.g Citrus clementina HOM05D005211 ORTHO05D006148 1.0e-15 87.4 164 37.2
PGSC0003DMG400005560 Solanum tuberosum HOM05D005211 ORTHO05D006148 1.0e-15 87.4 136 40.4
HPP92_023344 Vanilla planifolia HOM05D005211 ORTHO05D006148 1.0e-15 87.4 147 42.2
Migut.N00665 Erythranthe guttata HOM05D005211 ORTHO05D006148 1.8e-15 86.7 151 37.7
vmacro02818 Vaccinium macrocarpon HOM05D005211 ORTHO05D006148 1.8e-15 86.7 162 39.5
AT2G43060 Arabidopsis thaliana HOM05D005211 ORTHO05D006148 3.0e-15 85.9 143 45.5
BcaNung03535 Brassica carinata HOM05D005211 ORTHO05D006148 3.9e-15 85.5 144 43.8
Sp4g25190 Schrenkiella parvula HOM05D005211 ORTHO05D006148 5.2e-15 85.1 151 41.7
Rhsim13G0052900 Rhododendron simsii HOM05D005211 ORTHO05D006148 6.7e-15 84.7 123 46.3
BNapus_Darmor_BZH_scaffold_64p00090 Brassica napus HOM05D005211 ORTHO05D006148 1.1e-14 84.0 141 43.3
BraA04t18707Z Brassica rapa HOM05D005211 ORTHO05D006148 1.1e-14 84.0 141 43.3
ECA247G2119 Erigeron canadensis HOM05D005211 ORTHO05D006148 1.1e-14 84.0 115 45.2
CDE09G1368 Ceratophyllum demersum HOM05D005211 ORTHO05D006148 1.5e-14 83.6 143 42.0
HanXRQChr01g0007251 Helianthus annuus HOM05D005211 ORTHO05D006148 2.0e-14 83.2 156 38.5
QL09p046680 Quercus lobata HOM05D005211 ORTHO05D006148 2.6e-14 82.8 141 41.1
SGA_v2.0_scaffold77G25295 Striga asiatica HOM05D005211 ORTHO05D006148 2.6e-14 82.8 149 35.6
BcaB06g29284 Brassica carinata HOM05D005211 ORTHO05D006148 5.7e-14 81.6 143 42.0
BcaB06g29285 Brassica carinata HOM05D005211 ORTHO05D006148 5.7e-14 81.6 143 42.0
AL4G41710 Arabidopsis lyrata HOM05D005211 ORTHO05D006148 1.3e-13 80.5 147 43.5
DCAR_004769 Daucus carota HOM05D005211 ORTHO05D006148 1.7e-13 80.1 149 38.9
C04p70060 Brassica napus HOM05D005211 ORTHO05D006148 2.2e-13 79.7 138 41.3
BolC4t28506H Brassica oleracea HOM05D005211 ORTHO05D006148 2.2e-13 79.7 138 41.3
Hma1.2p1_0959F.1_g241620 Hydrangea macrophylla HOM05D005211 ORTHO05D006148 2.8e-13 79.3 113 42.5
CARHR138130 Cardamine hirsuta HOM05D005211 ORTHO05D006148 8.2e-13 77.8 153 43.1
Os04g0660100 Oryza sativa ssp. japonica HOM05D005211 ORTHO05D006148 8.2e-13 77.8 170 35.9
FAN15G2376 Fragaria x ananassa HOM05D005211 ORTHO05D006148 2.4e-12 76.3 100 51.0
Oeu049588.1 Olea europaea HOM05D005211 ORTHO05D006148 2.4e-12 76.3 98 45.9
Peaxi162Scf00335g00067 Petunia axillaris HOM05D005211 ORTHO05D006148 5.3e-12 75.1 88 51.1
Aa31LG1G24830 Aethionema arabicum HOM05D005211 ORTHO05D006148 7.0e-12 74.7 147 36.7
MSTRG.18497 Avicennia marina HOM05D005211 ORTHO05D006148 7.0e-12 74.7 152 37.5
BcaC02g12418 Brassica carinata HOM05D005211 ORTHO05D006148 7.0e-12 74.7 146 39.0
BolC4t22051H Brassica oleracea HOM05D005211 ORTHO05D006148 7.0e-12 74.7 146 39.0
C04p04120 Brassica napus HOM05D005211 ORTHO05D006148 9.1e-12 74.3 145 40.0
Gohir.D07G167400 Gossypium hirsutum HOM05D005211 ORTHO05D006148 1.2e-11 73.9 109 47.7
Gohir.A07G159000 Gossypium hirsutum HOM05D005211 ORTHO05D006148 1.6e-11 73.6 141 36.9
A05p03550 Brassica napus HOM05D005211 ORTHO05D006148 2.0e-11 73.2 146 38.4
BraA05t19341Z Brassica rapa HOM05D005211 ORTHO05D006148 2.0e-11 73.2 146 38.4
ATR0686G247 Amborella trichopoda HOM05D005211 ORTHO05D006148 3.5e-11 72.4 142 38.7
Solyc12g042010.1 Solanum lycopersicum HOM05D005211 ORTHO05D006148 4.5e-11 72.0 136 37.5
Gorai.N002800 Gossypium raimondii HOM05D005211 ORTHO05D006148 5.9e-11 71.6 141 36.2
unitig_52.g17443 Utricularia gibba HOM05D005211 ORTHO05D006148 1.0e-10 70.9 148 37.8
unitig_0.g414 Utricularia gibba HOM05D005211 ORTHO05D006148 2.2e-10 69.7 146 37.0
Actinidia30014 Actinidia chinensis HOM05D005211 ORTHO05D006148 5.0e-10 68.6 93 46.2
Ah.11g050990 Amaranthus hybridus HOM05D005211 ORTHO05D006148 8.5e-10 67.8 121 39.7
Nitab4.5_0004516g0010 Nicotiana tabacum HOM05D005211 ORTHO05D006148 1.1e-09 67.4 88 46.6
Dinv10443 Davidia involucrata HOM05D005211 ORTHO05D006148 1.9e-09 66.6 161 35.4
Sopen09g012960 Solanum pennellii HOM05D005211 ORTHO05D006148 1.9e-09 66.6 112 37.5
Zm00001eb432720 Zea mays HOM05D005211 ORTHO05D006148 3.6e-08 62.4 177 31.6
SEGI_03314 Sequoiadendron giganteum HOM05D016169 ORTHO05D004874 6.1e-08 61.6 179 31.3
Dinv44235 Davidia involucrata HOM05D005211 ORTHO05D006148 1.0e-07 60.8 106 44.3
Atru.chr6.3543 Acer truncatum HOM05D005211 ORTHO05D006148 1.8e-07 60.1 39 66.7
CSS0032639 Camellia sinensis var. sinensis HOM05D005211 ORTHO05D006148 2.3e-07 59.7 90 44.4
Ciclev10009640m.g Citrus clementina HOM05D004507 ORTHO05D004874 1.5e-06 57.0 178 31.5
Sed0006958 Sechium edule HOM05D004507 ORTHO05D004874 4.4e-06 55.5 176 31.8


User provided reference genes

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