Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.01G102900 Carya illinoinensis HOM05D004311 ORTHO05D005145 0.0e+00 1306.2 690 100.0
Haze_00714 Corylus avellana HOM05D004311 ORTHO05D005145 7.1e-218 761.1 761 59.1
Cfa015780 Carpinus fangiana HOM05D004311 ORTHO05D005145 4.5e-188 662.1 492 71.1
QL10p045440 Quercus lobata HOM05D004311 ORTHO05D005145 5.2e-184 648.7 894 48.5
GSVIVG01013563001 Vitis vinifera HOM05D004311 ORTHO05D005145 3.2e-125 453.4 496 53.4
Potri.007G124150 Populus trichocarpa HOM05D004311 ORTHO05D005145 2.3e-123 447.2 722 42.0
Thecc.04G184200 Theobroma cacao HOM05D004311 ORTHO05D005145 2.8e-121 440.3 652 45.7
Ciclev10019191m.g Citrus clementina HOM05D004311 ORTHO05D005145 8.1e-121 438.7 721 43.7
FAN17G0085 Fragaria x ananassa HOM05D004311 ORTHO05D005145 2.0e-119 434.1 563 49.6
Manes.11G116001 Manihot esculenta HOM05D004311 ORTHO05D005145 2.0e-119 434.1 773 41.9
Atru.chr5.2612 Acer truncatum HOM05D004311 ORTHO05D005145 8.4e-118 428.7 529 49.7
FAN07G0445 Fragaria x ananassa HOM05D004311 ORTHO05D005145 8.4e-118 428.7 507 52.5
Gohir.D10G132100 Gossypium hirsutum HOM05D004311 ORTHO05D005145 8.4e-118 428.7 715 42.2
Atru.chr3.1596 Acer truncatum HOM05D004311 ORTHO05D005145 3.2e-117 426.8 515 50.9
Gohir.A10G134400 Gossypium hirsutum HOM05D004311 ORTHO05D005145 3.2e-117 426.8 717 41.4
FvH4_4g11290 Fragaria vesca HOM05D004311 ORTHO05D005145 7.1e-117 425.6 562 49.1
Gorai.011G145800 Gossypium raimondii HOM05D004311 ORTHO05D005145 9.3e-117 425.2 715 42.1
Potri.017G036200 Populus trichocarpa HOM05D004311 ORTHO05D005145 2.1e-116 424.1 684 42.7
Actinidia35905 Actinidia chinensis HOM05D004311 ORTHO05D005145 2.7e-116 423.7 736 41.0
TWI34G1341 Tripterygium wilfordii HOM05D004311 ORTHO05D005145 2.5e-114 417.2 752 42.3
Duzib268G0197 Durio zibethinus HOM05D004311 ORTHO05D005145 4.3e-114 416.4 419 55.4
Dinv44218 Davidia involucrata HOM05D004311 ORTHO05D005145 4.8e-113 412.9 503 50.5
Eucgr.A00251 Eucalyptus grandis HOM05D004311 ORTHO05D005145 5.3e-112 409.5 499 50.5
Sabra17G0023900 Salix brachista HOM05D004311 ORTHO05D005145 4.5e-111 406.4 690 41.4
PGR083G0820 Punica granatum HOM05D004311 ORTHO05D005145 5.7e-106 389.4 487 47.8
Sopen09g036480 Solanum pennellii HOM05D004311 ORTHO05D005145 7.6e-103 379.0 493 47.9
CANSAT11G1749 Cannabis sativa HOM05D004311 ORTHO05D005145 1.0e-102 378.6 420 52.6
Rhsim09G0031800 Rhododendron simsii HOM05D004311 ORTHO05D005145 8.4e-102 375.6 596 41.3
Solyc09g098560.2 Solanum lycopersicum HOM05D004311 ORTHO05D005145 2.5e-101 374.0 493 47.7
Ca_11399_v3 Cicer arietinum L. HOM05D004311 ORTHO05D005145 1.2e-100 371.7 478 49.2
Ca_11402_v3 Cicer arietinum L. HOM05D004311 ORTHO05D005145 1.2e-100 371.7 478 49.2
Ca_29593_v3 Cicer arietinum L. HOM05D004311 ORTHO05D005145 1.2e-100 371.7 478 49.2
arahy.Tifrunner.gnm1.ann1.TTS68P Arachis hypogaea HOM05D004311 ORTHO05D005145 2.1e-100 370.9 468 49.8
arahy.Tifrunner.gnm1.ann1.D3CYL9 Arachis hypogaea HOM05D004311 ORTHO05D005145 7.9e-100 369.0 460 50.4
Sed0012126 Sechium edule HOM05D004311 ORTHO05D005145 2.3e-99 367.5 675 40.1
CsaV3_4G003570 Cucumis sativus L. HOM05D004311 ORTHO05D005145 5.1e-99 366.3 529 44.6
MELO3C017696.2 Cucumis melo HOM05D004311 ORTHO05D005145 1.8e-96 357.8 414 50.2
Glyma.20G245800 Glycine max HOM05D004311 ORTHO05D005145 1.8e-96 357.8 422 50.7
Cc03_g13030 Coffea canephora HOM05D004311 ORTHO05D005145 6.9e-96 355.9 426 50.0
Lalb_Chr21g0307601 Lupinus albus HOM05D004311 ORTHO05D005145 9.0e-96 355.5 409 51.8
COL.COLO4_24387 Corchorus olitorius HOM05D004311 ORTHO05D005145 1.2e-95 355.1 772 36.9
Glyma.10G295800 Glycine max HOM05D004311 ORTHO05D005145 1.5e-95 354.8 431 50.8
Lj5g0018220 Lotus japonicus HOM05D004311 ORTHO05D005145 1.5e-95 354.8 477 47.6
Nitab4.5_0006710g0020 Nicotiana tabacum HOM05D004311 ORTHO05D005145 2.0e-95 354.4 487 47.6
Phvul.007G004100 Phaseolus vulgaris HOM05D004311 ORTHO05D005145 2.6e-95 354.0 520 45.6
RcHm_v2.0_Chr4g0407531 Rosa chinensis HOM05D004311 ORTHO05D005145 1.0e-94 352.1 353 56.7
Sc19g0002150 Simmondsia chinensis HOM05D004311 ORTHO05D005145 2.5e-93 347.4 481 44.1
Dinv22688 Davidia involucrata HOM05D004311 ORTHO05D005145 4.2e-93 346.7 541 42.7
Medtr1g116530 Medicago truncatula HOM05D004311 ORTHO05D005145 2.3e-91 340.9 504 47.0
Peaxi162Scf00319g00915 Petunia axillaris HOM05D004311 ORTHO05D005145 3.9e-91 340.1 413 51.1
TPR.G10413 Trifolium pratense HOM05D004311 ORTHO05D005145 3.3e-90 337.0 404 51.0
Nn2g11494 Nelumbo nucifera HOM05D004311 ORTHO05D005145 5.7e-90 336.3 469 45.0
CAN.G710.65 Capsicum annuum HOM05D004311 ORTHO05D005145 1.3e-89 335.1 511 43.4
Hund12225 Selenicereus undatus HOM05D004311 ORTHO05D005145 1.3e-89 335.1 410 47.6
EL10Ac3g06308 Beta vulgaris HOM05D004311 ORTHO05D005145 2.8e-89 334.0 704 36.8
SGA_v2.0_scaffold12G06156 Striga asiatica HOM05D004311 ORTHO05D005145 2.4e-88 330.9 470 44.0
TAR375G1135 Trochodendron aralioides HOM05D004311 ORTHO05D005145 6.9e-88 329.3 465 44.7
MD04G1038300 Malus domestica HOM05D004311 ORTHO05D005145 1.2e-87 328.6 288 62.5
THA.LOC104821356 Tarenaya hassleriana HOM05D004311 ORTHO05D005145 5.9e-87 326.2 520 42.1
vmacro00589 Vaccinium macrocarpon HOM05D004311 ORTHO05D005145 2.9e-86 323.9 342 52.6
Lj6A60T46 Lonicera japonica HOM05D004311 ORTHO05D005145 3.8e-86 323.6 302 60.6
SalBow3G3821 Salvia bowleyana HOM05D004311 ORTHO05D005145 1.1e-85 322.0 482 43.6
Lsat_1_v5_gn_6_54900 Lactuca sativa HOM05D004311 ORTHO05D005145 4.2e-85 320.1 488 43.2
MSTRG.20570 Avicennia marina HOM05D004311 ORTHO05D005145 2.1e-84 317.8 482 44.6
Psat6g241440 Pisum sativum HOM05D004311 ORTHO05D005145 7.9e-84 315.8 475 45.1
Actinidia33018 Actinidia chinensis HOM05D004311 ORTHO05D005145 1.0e-83 315.5 462 44.6
HanXRQChr07g0186701 Helianthus annuus HOM05D004311 ORTHO05D005145 3.9e-83 313.5 497 41.6
VMungo0720G0448 Vigna mungo HOM05D004311 ORTHO05D005145 5.1e-83 313.2 503 42.9
MBI08_g33649_MAGBIO Magnolia biondii HOM05D004311 ORTHO05D005145 7.4e-82 309.3 459 43.6
AUR62002610 Chenopodium quinoa HOM05D004311 ORTHO05D005145 3.7e-81 307.0 492 40.4
Nitab4.5_0000526g0040 Nicotiana tabacum HOM05D004311 ORTHO05D005145 3.7e-81 307.0 289 58.5
Aqoxy5G04052 Aquilegia oxysepala HOM05D004311 ORTHO05D005145 1.1e-80 305.4 431 44.1
AUR62030033 Chenopodium quinoa HOM05D004311 ORTHO05D005145 1.4e-80 305.1 492 40.0
Sabra17G0023400 Salix brachista HOM05D004311 ORTHO05D005145 1.5e-77 295.0 339 50.7
CDE09G0340 Ceratophyllum demersum HOM05D004311 ORTHO05D005145 1.9e-77 294.7 403 43.9
DCAR_028443 Daucus carota HOM05D004311 ORTHO05D005145 1.9e-77 294.7 502 40.8
CDE02G0781 Ceratophyllum demersum HOM05D004311 ORTHO05D005145 4.2e-77 293.5 403 45.4
Nitab4.5_0004962g0030 Nicotiana tabacum HOM05D004311 ORTHO05D005145 2.1e-76 291.2 436 44.0
ClCG07G015850 Citrullus lanatus HOM05D004311 ORTHO05D005145 1.8e-75 288.1 285 57.5
TWI60G0507 Tripterygium wilfordii HOM05D004311 ORTHO05D005145 1.8e-75 288.1 629 36.6
HPP92_009171 Vanilla planifolia HOM05D004311 ORTHO05D005145 7.5e-74 282.7 432 40.7
Migut.G01038 Erythranthe guttata HOM05D004311 ORTHO05D005145 4.8e-73 280.0 403 44.9
Sp4g24640 Schrenkiella parvula HOM05D004311 ORTHO05D005145 4.1e-72 276.9 492 37.8
unitig_8.g3035 Utricularia gibba HOM05D004311 ORTHO05D005145 1.6e-71 275.0 407 41.8
Carub.0004s2496 Capsella rubella HOM05D004311 ORTHO05D005145 3.2e-69 267.3 499 39.7
Aa31LG2G1780 Aethionema arabicum HOM05D004311 ORTHO05D005145 2.1e-68 264.6 498 38.6
SHI06503 Sapria himalayana HOM05D004311 ORTHO05D005145 3.0e-67 260.8 329 46.2
AT1G54380 Arabidopsis thaliana HOM05D004311 ORTHO05D005145 4.0e-67 260.4 480 38.1
ATR0743G139 Amborella trichopoda HOM05D004311 ORTHO05D005145 6.8e-67 259.6 410 41.5
BcaC02g07234 Brassica carinata HOM05D004311 ORTHO05D005145 6.8e-67 259.6 589 34.8
BcaC02g12437 Brassica carinata HOM05D004311 ORTHO05D005145 2.6e-66 257.7 670 33.4
FAN22G0235 Fragaria x ananassa HOM05D004311 ORTHO05D005820 3.4e-66 257.3 254 57.9
Prupe.1G189100 Prunus persica HOM05D004311 ORTHO05D005145 3.4e-66 257.3 253 57.7
BolC4t22005H Brassica oleracea HOM05D004311 ORTHO05D005145 1.7e-65 255.0 501 35.5
A05p03080 Brassica napus HOM05D004311 ORTHO05D005145 2.8e-65 254.2 591 34.5
BcaNung03232 Brassica carinata HOM05D004311 ORTHO05D005145 3.7e-65 253.8 589 34.3
CARHR055450 Cardamine hirsuta HOM05D004311 ORTHO05D005145 4.8e-65 253.4 484 38.4
C04p03710 Brassica napus HOM05D004311 ORTHO05D005145 1.8e-64 251.5 670 32.1
BraA05t19299Z Brassica rapa HOM05D004311 ORTHO05D005145 2.4e-64 251.1 590 34.9
C04p69770 Brassica napus HOM05D004311 ORTHO05D005145 4.1e-64 250.4 603 34.0
PSO675G5961 Papaver somniferum HOM05D004311 ORTHO05D005145 5.4e-64 250.0 470 37.7
Zm00001eb248350 Zea mays HOM05D004311 ORTHO05D005145 5.4e-64 250.0 415 38.8
Oeu007717.1 Olea europaea HOM05D004311 ORTHO05D005145 1.5e-61 241.9 303 48.2
PSO017G7323 Papaver somniferum HOM05D004311 ORTHO05D005145 1.5e-61 241.9 475 36.4
Os11g0293300 Oryza sativa ssp. japonica HOM05D004311 ORTHO05D005145 3.2e-61 240.7 413 39.7
Duzib151G0942 Durio zibethinus HOM05D004311 ORTHO05D005145 3.4e-58 230.7 518 36.7
Haze_00722 Corylus avellana HOM05D001997 ORTHO05D004620 1.1e-53 215.7 178 66.9
SEGI_09077 Sequoiadendron giganteum HOM05D004311 ORTHO05D005145 1.9e-53 214.9 296 42.2
Prupe.1G188800 Prunus persica HOM05D004311 ORTHO05D005145 3.3e-53 214.2 486 35.0
Lalb_Chr02g0144311 Lupinus albus HOM05D004311 ORTHO05D005145 3.6e-52 210.7 329 44.7
Cpa.g.sc73.18 Carica papaya HOM05D004311 ORTHO05D005145 8.0e-52 209.5 224 54.0
Pp3c18_5230 Physcomitrium patens HOM05D004311 ORTHO05D005145 5.6e-45 186.8 469 32.4
SMO351G0426 Selaginella moellendorffii HOM05D004311 ORTHO05D005145 1.6e-44 185.3 283 42.0
SMO273G0052 Selaginella moellendorffii HOM05D004311 ORTHO05D005145 1.3e-41 175.6 279 40.1
AagrBONN_evm.TU.Sc2ySwM_228.1282 Anthoceros agrestis HOM05D004311 ORTHO05D005145 2.7e-39 167.9 536 30.2
CBR_g48670 Chara braunii HOM05D004311 ORTHO05D005145 3.5e-39 167.5 374 32.4
SMO174G0256 Selaginella moellendorffii HOM05D004311 ORTHO05D005145 3.4e-34 151.0 282 35.8
BcaNung05216 Brassica carinata HOM05D004311 ORTHO05D005145 2.2e-33 148.3 397 29.5
BcaB06g29252 Brassica carinata HOM05D004311 ORTHO05D005145 6.4e-33 146.7 585 28.0
Thhalv10017985m.g Eutrema salsugineum HOM05D004311 ORTHO05D005145 7.8e-31 139.8 214 41.6
Nitab4.5_0001049g0080 Nicotiana tabacum HOM05D004311 ORTHO05D005145 2.8e-28 131.3 239 38.1
Mapoly0064s0042 Marchantia polymorpha HOM05D004311 ORTHO05D005145 6.2e-28 130.2 221 40.7
TWI60G1520 Tripterygium wilfordii HOM05D004311 ORTHO05D005145 4.0e-27 127.5 150 51.3
Sabra07G0100500 Salix brachista HOM05D004311 ORTHO05D005145 1.2e-23 115.9 367 31.9
RcHm_v2.0_Chr4g0407521 Rosa chinensis HOM05D004311 ORTHO05D005145 5.1e-22 110.5 176 44.3
vmacro00590 Vaccinium macrocarpon HOM05D004311 ORTHO05D005145 4.0e-19 100.9 163 39.9
BcaNung00544 Brassica carinata HOM05D004311 ORTHO05D005145 7.6e-18 96.7 88 54.5
MD04G1038400 Malus domestica HOM05D004311 ORTHO05D005145 1.3e-17 95.9 423 27.9
Hma1.2p1_0429F.1_g151120 Hydrangea macrophylla HOM05D004311 ORTHO05D005145 2.2e-17 95.1 107 45.8
MCO03G002 Micromonas commoda HOM05D004311 ORTHO05D005145 3.8e-17 94.4 276 29.3
Cpa.g.sc1876.1 Carica papaya HOM05D004311 ORTHO05D005145 4.6e-15 87.4 156 38.5
CANSAT78G0609 Cannabis sativa HOM05D004311 ORTHO05D005145 2.3e-14 85.1 157 38.9
PGSC0003DMG400021611 Solanum tuberosum HOM05D004311 ORTHO05D005145 2.3e-14 85.1 160 38.1
Cfa001182 Carpinus fangiana HOM05D001050 ORTHO05D001270 3.0e-14 84.7 106 50.0
TAR362G0891 Trochodendron aralioides HOM05D015611 ORTHO05D005145 5.6e-13 80.5 121 42.1
CANSAT01G2758 Cannabis sativa HOM05D004311 ORTHO05D005145 7.3e-13 80.1 160 36.9
CSS0021437 Camellia sinensis var. sinensis HOM05D004311 ORTHO05D005145 1.3e-12 79.3 434 25.1
Lj6A60T47 Lonicera japonica HOM05D004311 ORTHO05D005145 2.8e-12 78.2 312 27.6
TAR374G0693 Trochodendron aralioides HOM05D015611 ORTHO05D005145 2.4e-11 75.1 72 51.4
BolC4t28477H Brassica oleracea HOM05D004311 ORTHO05D005145 2.9e-09 68.2 52 53.8
SGA_v2.0_scaffold290G47298 Striga asiatica HOM05D002786 ORTHO05D003493 6.4e-09 67.0 60 56.7
CARHR137590 Cardamine hirsuta HOM05D004311 ORTHO05D005145 1.9e-08 65.5 48 66.7
THA.LOC104798849 Tarenaya hassleriana HOM05D004311 ORTHO05D005145 5.4e-08 63.9 235 30.2
Cre09.g405650 Chlamydomonas reinhardtii HOM05D004311 ORTHO05D005145 1.6e-07 62.4 66 50.0
Ah.13g074370 Amaranthus hybridus HOM05D004311 ORTHO05D005145 2.7e-07 61.6 127 35.4
Oeu050349.1 Olea europaea HOM05D004311 ORTHO05D005145 6.0e-07 60.5 156 34.0
PSO170G3519 Papaver somniferum HOM05D015611 ORTHO05D026019 7.9e-07 60.1 54 46.3
SEGI_08315 Sequoiadendron giganteum HOM05D004311 ORTHO05D005145 1.0e-06 59.7 52 57.7
PSO339G0153 Papaver somniferum HOM05D015611 ORTHO05D026019 1.3e-06 59.3 54 48.1
PSO384G3421 Papaver somniferum HOM05D015611 ORTHO05D026019 2.3e-06 58.5 54 48.1
TAR374G0043 Trochodendron aralioides HOM05D004311 ORTHO05D005145 6.7e-06 57.0 60 48.3


User provided reference genes

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