Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.01G100300 Carya illinoinensis HOM05D003486 ORTHO05D004600 5.1e-271 937.2 480 100.0
Cfa015169 Carpinus fangiana HOM05D003486 ORTHO05D004600 9.7e-206 720.3 480 80.2
QL10p048816 Quercus lobata HOM05D003486 ORTHO05D004600 4.5e-179 631.7 594 60.9
Prupe.1G194100 Prunus persica HOM05D003486 ORTHO05D004600 2.3e-175 619.4 478 67.8
Atru.chr3.1489 Acer truncatum HOM05D003486 ORTHO05D004600 1.3e-173 613.6 486 69.1
Manes.11G120800 Manihot esculenta HOM05D003486 ORTHO05D004600 3.6e-168 595.5 482 66.8
Gorai.011G142600 Gossypium raimondii HOM05D003486 ORTHO05D004600 7.8e-163 577.8 465 64.9
Ciclev10019579m.g Citrus clementina HOM05D003486 ORTHO05D004600 2.3e-162 576.2 468 65.4
Gohir.D10G129301 Gossypium hirsutum HOM05D003486 ORTHO05D004600 2.3e-162 576.2 465 64.7
Dinv44191 Davidia involucrata HOM05D003486 ORTHO05D004600 3.0e-162 575.9 486 64.4
MD04G1040400 Malus domestica HOM05D003486 ORTHO05D004600 1.1e-161 573.9 463 63.9
Gohir.A10G137350 Gossypium hirsutum HOM05D003486 ORTHO05D004600 4.7e-160 568.5 465 64.3
Potri.007G128300 Populus trichocarpa HOM05D003486 ORTHO05D004600 4.7e-160 568.5 497 65.0
Duzib151G0706 Durio zibethinus HOM05D003486 ORTHO05D004600 7.6e-158 561.2 482 62.2
RcHm_v2.0_Chr4g0406781 Rosa chinensis HOM05D003486 ORTHO05D004600 7.6e-158 561.2 478 64.2
CSS0039550 Camellia sinensis var. sinensis HOM05D003486 ORTHO05D004600 4.9e-157 558.5 486 63.8
FvH4_4g10800 Fragaria vesca HOM05D003486 ORTHO05D004600 4.9e-157 558.5 478 64.2
Sabra07G0104700 Salix brachista HOM05D003486 ORTHO05D004600 1.1e-156 557.4 508 63.2
CANSAT78G0197 Cannabis sativa HOM05D003486 ORTHO05D004600 5.4e-156 555.1 486 62.6
Actinidia11303 Actinidia chinensis HOM05D003486 ORTHO05D004600 2.3e-146 523.1 484 61.6
Ca_20787_v3 Cicer arietinum L. HOM05D003486 ORTHO05D004600 2.3e-146 523.1 480 60.6
PGR083G0732 Punica granatum HOM05D003486 ORTHO05D004600 6.2e-144 515.0 484 60.5
Phvul.011G054400 Phaseolus vulgaris HOM05D003486 ORTHO05D004600 9.0e-143 511.1 479 59.7
TPR.G34255 Trifolium pratense HOM05D003486 ORTHO05D004600 2.0e-142 510.0 482 60.8
Thecc.04G179700 Theobroma cacao HOM05D003486 ORTHO05D004600 3.4e-142 509.2 408 65.4
Lj3g0017553 Lotus japonicus HOM05D003486 ORTHO05D004600 1.3e-141 507.3 483 60.2
arahy.Tifrunner.gnm1.ann1.Q0VLRE Arachis hypogaea HOM05D003486 ORTHO05D004600 2.2e-141 506.5 481 61.5
VMungo1127G0960 Vigna mungo HOM05D003486 ORTHO05D004600 2.9e-141 506.1 479 59.3
arahy.Tifrunner.gnm1.ann1.NQA14U Arachis hypogaea HOM05D003486 ORTHO05D004600 4.9e-141 505.4 481 61.3
TWI15G0158 Tripterygium wilfordii HOM05D003486 ORTHO05D004600 1.1e-140 504.2 489 59.9
TWI15G0580 Tripterygium wilfordii HOM05D003486 ORTHO05D004600 1.1e-140 504.2 489 59.9
Rhsim02G0076900 Rhododendron simsii HOM05D003486 ORTHO05D004600 1.2e-139 500.7 483 59.4
Sp5g03730 Schrenkiella parvula HOM05D003486 ORTHO05D004600 3.0e-138 496.1 483 58.2
Sed0025407 Sechium edule HOM05D003486 ORTHO05D004600 1.9e-137 493.4 488 56.6
Oeu061594.1 Olea europaea HOM05D003486 ORTHO05D004600 2.5e-137 493.0 483 57.6
MELO3C011660.2 Cucumis melo HOM05D003486 ORTHO05D004600 3.6e-136 489.2 486 57.6
CARHR169800 Cardamine hirsuta HOM05D003486 ORTHO05D004600 1.4e-135 487.3 483 56.9
THA.LOC104803678 Tarenaya hassleriana HOM05D003486 ORTHO05D004600 9.0e-135 484.6 484 56.0
Psat7g214880 Pisum sativum HOM05D003486 ORTHO05D004600 1.2e-134 484.2 482 57.9
Sc19g0002660 Simmondsia chinensis HOM05D003486 ORTHO05D004600 1.2e-134 484.2 477 55.6
Medtr4g067160 Medicago truncatula HOM05D003486 ORTHO05D004600 4.5e-134 482.3 443 59.6
CsaV3_6G003940 Cucumis sativus L. HOM05D003486 ORTHO05D004600 2.2e-133 479.9 488 55.9
AT3G59410 Arabidopsis thaliana HOM05D003486 ORTHO05D004600 3.8e-133 479.2 470 57.2
BcaC07g40280 Brassica carinata HOM05D003486 ORTHO05D004600 3.8e-133 479.2 484 57.6
Thhalv10005755m.g Eutrema salsugineum HOM05D003486 ORTHO05D004600 1.9e-132 476.9 460 57.0
BolC8t51043H Brassica oleracea HOM05D003486 ORTHO05D004600 2.4e-132 476.5 486 57.6
Carub.0005s2615 Capsella rubella HOM05D003486 ORTHO05D004600 4.2e-132 475.7 484 54.5
C08p34420 Brassica napus HOM05D003486 ORTHO05D004600 9.3e-132 474.6 485 57.5
Eucgr.L02279 Eucalyptus grandis HOM05D003486 ORTHO05D004600 3.5e-131 472.6 479 54.9
Lalb_Chr01g0003151 Lupinus albus HOM05D003486 ORTHO05D004600 1.3e-130 470.7 468 57.7
AL5G41310 Arabidopsis lyrata HOM05D003486 ORTHO05D004600 5.3e-127 458.8 471 55.2
BraA09t40605Z Brassica rapa HOM05D003486 ORTHO05D004600 1.5e-126 457.2 483 55.5
A09p51690 Brassica napus HOM05D003486 ORTHO05D004600 5.8e-126 455.3 482 56.0
Cc03_g12950 Coffea canephora HOM05D003486 ORTHO05D004600 7.6e-126 454.9 486 55.1
Sopen11g020460 Solanum pennellii HOM05D003486 ORTHO05D004600 2.2e-125 453.4 483 54.2
PSO017G7170 Papaver somniferum HOM05D003486 ORTHO05D004600 4.9e-125 452.2 486 53.3
Aa31LG10G13760 Aethionema arabicum HOM05D003486 ORTHO05D004600 6.5e-125 451.8 482 53.5
Hund03158 Selenicereus undatus HOM05D003486 ORTHO05D004600 8.4e-125 451.4 529 51.0
EL10Ac3g05937 Beta vulgaris HOM05D003486 ORTHO05D004600 7.1e-124 448.4 470 53.6
PSO675G4708 Papaver somniferum HOM05D003486 ORTHO05D004600 7.1e-124 448.4 486 53.1
SalBow3G2610 Salvia bowleyana HOM05D003486 ORTHO05D004600 2.1e-123 446.8 449 54.8
Aqoxy2G04161 Aquilegia oxysepala HOM05D003486 ORTHO05D004600 5.7e-121 438.7 483 51.3
Haze_01509 Corylus avellana HOM05D003486 ORTHO05D004600 6.9e-119 431.8 380 64.2
AUR62015385 Chenopodium quinoa HOM05D003486 ORTHO05D004600 3.8e-117 426.0 538 47.2
Migut.G01067 Erythranthe guttata HOM05D003486 ORTHO05D004600 1.6e-115 420.6 479 52.2
Lsat_1_v5_gn_3_115420 Lactuca sativa HOM05D003486 ORTHO05D004600 1.3e-114 417.5 481 50.9
Lj6A53G34 Lonicera japonica HOM05D003486 ORTHO05D004600 3.9e-114 416.0 493 49.1
SGA_v2.0_scaffold17G08091 Striga asiatica HOM05D003486 ORTHO05D004600 6.7e-114 415.2 484 51.0
Glyma.12G052400 Glycine max HOM05D003486 ORTHO05D004600 4.8e-112 409.1 405 57.5
HanXRQChr03g0091131 Helianthus annuus HOM05D003486 ORTHO05D004600 5.3e-111 405.6 480 51.5
Nn1g09587 Nelumbo nucifera HOM05D003486 ORTHO05D004600 4.5e-110 402.5 430 54.4
BcaC07g40457 Brassica carinata HOM05D003486 ORTHO05D004600 2.2e-109 400.2 419 53.0
ECA240G0242 Erigeron canadensis HOM05D003486 ORTHO05D004600 4.2e-108 396.0 456 51.1
FAN07G1795 Fragaria x ananassa HOM05D003486 ORTHO05D004600 2.4e-103 380.2 373 59.5
ATR0824G223 Amborella trichopoda HOM05D003486 ORTHO05D004600 1.2e-91 341.3 512 44.3
AUR62002305 Chenopodium quinoa HOM05D003486 ORTHO05D004600 3.0e-90 336.7 490 45.3
unitig_747.g21328 Utricularia gibba HOM05D003486 ORTHO05D004600 4.7e-83 312.8 455 42.4
Zm00001eb078800 Zea mays HOM05D003486 ORTHO05D004600 3.0e-82 310.1 436 45.0
FAN17G1210 Fragaria x ananassa HOM05D003486 ORTHO05D004600 2.9e-77 293.5 369 48.5
HPP92_023710 Vanilla planifolia HOM05D003486 ORTHO05D004600 8.5e-77 292.0 467 43.3
GSVIVG01010757001 Vitis vinifera HOM05D003486 ORTHO05D004600 1.5e-73 281.2 254 60.2
Eucgr.A00081 Eucalyptus grandis HOM05D003486 ORTHO05D004600 2.8e-72 276.9 319 49.5
CDE02G1871 Ceratophyllum demersum HOM05D003486 ORTHO05D004600 2.3e-69 267.3 483 40.0
Pp3c26_5370 Physcomitrium patens HOM05D003486 ORTHO05D004600 5.4e-63 246.1 505 36.4
Hma1.2p1_0847F.1_g227860 Hydrangea macrophylla HOM05D003486 ORTHO05D004600 1.6e-62 244.6 161 80.1
Peaxi162Scf00126g00121 Petunia axillaris HOM05D003486 ORTHO05D004600 1.0e-61 241.9 321 46.4
Nitab4.5_0001940g0020 Nicotiana tabacum HOM05D003486 ORTHO05D004600 5.0e-61 239.6 319 46.4
Mapoly0088s0047 Marchantia polymorpha HOM05D003486 ORTHO05D004600 1.4e-55 221.5 527 33.6
Solyc11g045000.1 Solanum lycopersicum HOM05D003486 ORTHO05D004600 3.2e-55 220.3 319 44.8
GSVIVG01010755001 Vitis vinifera HOM05D003486 ORTHO05D004600 5.6e-52 209.5 157 73.2
Haze_01510 Corylus avellana HOM05D003486 ORTHO05D004600 3.6e-51 206.8 135 84.4
SEGI_08545 Sequoiadendron giganteum HOM05D003486 ORTHO05D004600 8.1e-51 205.7 399 36.8
AagrBONN_evm.TU.Sc2ySwM_344.2066 Anthoceros agrestis HOM05D003486 ORTHO05D004600 3.5e-46 190.3 506 30.4
Cpa.g.sc9.276 Carica papaya HOM05D003486 ORTHO05D004600 4.1e-39 166.8 171 57.3
CAN.G336.8 Capsicum annuum HOM05D003486 ORTHO05D004600 2.7e-38 164.1 124 71.0
CAN.G336.7 Capsicum annuum HOM05D003486 ORTHO05D004600 1.7e-37 161.4 277 42.2
Ah.07g202020 Amaranthus hybridus HOM05D003486 ORTHO05D004600 3.3e-36 157.1 295 38.6
DCAR_023939 Daucus carota HOM05D003486 ORTHO05D004600 5.6e-36 156.4 124 67.7
ClCG08G004740 Citrullus lanatus HOM05D003486 ORTHO05D004600 1.7e-32 144.8 161 48.4
Os04g0492500 Oryza sativa ssp. japonica HOM05D003486 ORTHO05D004600 1.9e-31 141.4 366 35.0
FAN12G3204 Fragaria x ananassa HOM05D003486 ORTHO05D004600 9.3e-31 139.0 80 83.8
SMO364G0666 Selaginella moellendorffii HOM05D003486 ORTHO05D004600 4.6e-30 136.7 142 47.2
Nitab4.5_0001940g0010 Nicotiana tabacum HOM05D003486 ORTHO05D004600 2.4e-26 124.4 82 69.5
Ah.07g202030 Amaranthus hybridus HOM05D003486 ORTHO05D004600 4.0e-26 123.6 221 38.0
Nitab4.5_0001263g0030 Nicotiana tabacum HOM05D003486 ORTHO05D004600 1.5e-25 121.7 78 70.5
Nitab4.5_0001263g0060 Nicotiana tabacum HOM05D003486 ORTHO05D004600 8.4e-24 115.9 138 49.3
SEGI_39220 Sequoiadendron giganteum HOM05D003486 ORTHO05D004600 1.0e-21 109.0 106 53.8
Cpa.g.sc9.277 Carica papaya HOM05D003486 ORTHO05D004600 1.1e-20 105.5 101 51.5
BcaC02g10121 Brassica carinata HOM05D003486 ORTHO05D004600 1.8e-18 98.2 144 38.2
MCO05G349 Micromonas commoda HOM05D003486 ORTHO05D004600 1.7e-16 91.7 587 23.2
Nn1g09603 Nelumbo nucifera HOM05D003486 ORTHO05D004600 2.3e-13 81.3 42 90.5
Solyc11g044990.1 Solanum lycopersicum HOM05D003486 ORTHO05D004600 2.3e-13 81.3 108 43.5
GSVIVG01010758001 Vitis vinifera HOM05D003486 ORTHO05D004600 1.1e-12 79.0 68 64.7
HanXRQChr08g0224851 Helianthus annuus HOM05D003486 ORTHO05D010247 1.3e-11 75.5 106 45.3
Cre01.g038000 Chlamydomonas reinhardtii HOM05D003486 ORTHO05D004600 4.9e-08 63.5 56 60.7
TPR.G33124 Trifolium pratense HOM05D006946 ORTHO05D008634 3.2e-07 60.8 124 29.0
Medtr8g006950 Medicago truncatula HOM05D006946 ORTHO05D008634 9.3e-07 59.3 115 31.3
PRCOL_00004354 Prasinoderma coloniale HOM05D003486 ORTHO05D004600 9.3e-07 59.3 55 52.7
vmacro17327 Vaccinium macrocarpon HOM05D003486 ORTHO05D026524 9.3e-07 59.3 43 65.1
EL10Ac2g04155 Beta vulgaris HOM05D003486 ORTHO05D004600 6.0e-06 56.6 40 62.5


User provided reference genes

Program Settings