Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.01G096300 Carya illinoinensis HOM05D001043 ORTHO05D006432 3.8e-243 844.3 411 100.0
QL10p050774 Quercus lobata HOM05D001043 ORTHO05D006432 2.1e-169 599.4 440 69.5
Cfa015192 Carpinus fangiana HOM05D001043 ORTHO05D006432 2.4e-168 595.9 419 71.1
Haze_01462 Corylus avellana HOM05D001043 ORTHO05D006432 1.0e-166 590.5 451 67.4
Dinv44154 Davidia involucrata HOM05D001043 ORTHO05D006432 3.7e-153 545.4 419 66.1
Sabra07G0106300 Salix brachista HOM05D001043 ORTHO05D006432 2.4e-152 542.7 418 64.8
Atru.chr4.1261 Acer truncatum HOM05D001043 ORTHO05D006432 3.1e-152 542.3 436 63.1
Potri.007G130900 Populus trichocarpa HOM05D001043 ORTHO05D006432 6.9e-152 541.2 419 64.7
Potri.017G027000 Populus trichocarpa HOM05D001043 ORTHO05D006432 3.4e-151 538.9 416 64.7
Nitab4.5_0006064g0010 Nicotiana tabacum HOM05D001043 ORTHO05D006432 4.5e-151 538.5 419 63.0
Thecc.04G175400 Theobroma cacao HOM05D001043 ORTHO05D006432 1.0e-150 537.3 435 63.0
Ciclev10020184m.g Citrus clementina HOM05D001043 ORTHO05D006432 1.1e-149 533.9 436 61.2
Cpa.g.sc9.315 Carica papaya HOM05D001043 ORTHO05D006432 7.2e-149 531.2 418 63.6
Duzib212G0937 Durio zibethinus HOM05D001043 ORTHO05D006432 2.1e-148 529.6 437 61.3
Nitab4.5_0001586g0110 Nicotiana tabacum HOM05D001043 ORTHO05D006432 1.4e-147 526.9 419 61.8
MD04G1044900 Malus domestica HOM05D001043 ORTHO05D006432 5.1e-147 525.0 437 61.1
Eucgr.H00342 Eucalyptus grandis HOM05D001043 ORTHO05D006432 1.5e-146 523.5 416 61.8
Oeu022683.1 Olea europaea HOM05D001043 ORTHO05D006432 2.5e-146 522.7 419 60.4
Manes.11G123700 Manihot esculenta HOM05D001043 ORTHO05D006432 5.7e-146 521.5 439 60.1
Peaxi162Scf00180g00029 Petunia axillaris HOM05D001043 ORTHO05D006432 5.7e-146 521.5 419 60.9
arahy.Tifrunner.gnm1.ann1.41HRQM Arachis hypogaea HOM05D001043 ORTHO05D006432 4.8e-145 518.5 419 61.1
CANSAT78G0880 Cannabis sativa HOM05D001043 ORTHO05D006432 4.8e-145 518.5 421 61.0
CSS0043871 Camellia sinensis var. sinensis HOM05D001043 ORTHO05D006432 6.3e-145 518.1 437 59.7
Hma1.2p1_2415F.1_g321710 Hydrangea macrophylla HOM05D001043 ORTHO05D006432 8.2e-145 517.7 436 60.3
arahy.Tifrunner.gnm1.ann1.AV1GYT Arachis hypogaea HOM05D001043 ORTHO05D006432 1.4e-144 516.9 419 60.6
Glyma.11G126500 Glycine max HOM05D001043 ORTHO05D006432 4.1e-144 515.4 421 61.3
Nn7g38145 Nelumbo nucifera HOM05D001043 ORTHO05D006432 5.3e-144 515.0 419 59.9
Lj3g0012550 Lotus japonicus HOM05D001043 ORTHO05D006432 9.1e-144 514.2 420 62.1
PGSC0003DMG400016341 Solanum tuberosum HOM05D001043 ORTHO05D006432 2.0e-143 513.1 419 60.9
Actinidia27085 Actinidia chinensis HOM05D001043 ORTHO05D006432 2.6e-143 512.7 437 59.5
Oeu027753.1 Olea europaea HOM05D001043 ORTHO05D006432 2.6e-143 512.7 419 59.9
FvH4_4g10900 Fragaria vesca HOM05D001043 ORTHO05D006432 3.4e-143 512.3 419 61.8
FAN12G0575 Fragaria x ananassa HOM05D001043 ORTHO05D006432 4.5e-143 511.9 419 61.8
Lalb_Chr01g0003101 Lupinus albus HOM05D001043 ORTHO05D006432 4.5e-143 511.9 435 59.8
Sed0013039 Sechium edule HOM05D001043 ORTHO05D006432 7.7e-143 511.1 421 61.5
PGR142G3303 Punica granatum HOM05D001043 ORTHO05D006432 1.0e-142 510.8 421 60.1
RcHm_v2.0_Chr4g0406481 Rosa chinensis HOM05D001043 ORTHO05D006432 1.0e-142 510.8 420 61.9
Sopen06g018400 Solanum pennellii HOM05D001043 ORTHO05D006432 1.7e-142 510.0 419 60.4
SalBow3G3815 Salvia bowleyana HOM05D001043 ORTHO05D006432 3.8e-142 508.8 422 58.5
PSO832G3319 Papaver somniferum HOM05D001043 ORTHO05D006432 6.5e-142 508.1 434 57.6
Glyma.12G051100 Glycine max HOM05D001043 ORTHO05D006432 1.9e-141 506.5 419 60.9
Solyc06g053340.3 Solanum lycopersicum HOM05D001043 ORTHO05D006432 1.9e-141 506.5 419 59.7
Lj3A0G11 Lonicera japonica HOM05D001043 ORTHO05D006432 3.2e-141 505.8 417 59.7
TAR365G1116 Trochodendron aralioides HOM05D001043 ORTHO05D006432 3.2e-141 505.8 419 60.9
FAN17G1903 Fragaria x ananassa HOM05D001043 ORTHO05D006432 4.2e-141 505.4 419 60.9
PSO210G3503 Papaver somniferum HOM05D001043 ORTHO05D006432 1.6e-140 503.4 416 58.9
THA.LOC104800885 Tarenaya hassleriana HOM05D001043 ORTHO05D006432 1.6e-140 503.4 418 60.5
Medtr4g068130 Medicago truncatula HOM05D001043 ORTHO05D006432 2.1e-140 503.1 419 59.9
MSTRG.9754 Avicennia marina HOM05D001043 ORTHO05D006432 2.7e-140 502.7 419 58.2
CAN.G136.20 Capsicum annuum HOM05D001043 ORTHO05D006432 4.7e-140 501.9 419 59.2
TAR636G2727 Trochodendron aralioides HOM05D001043 ORTHO05D006432 4.7e-140 501.9 437 58.6
CsaV3_3G015970 Cucumis sativus L. HOM05D001043 ORTHO05D006432 1.0e-139 500.7 401 62.3
SGA_v2.0_scaffold12G06170 Striga asiatica HOM05D001043 ORTHO05D006432 1.4e-139 500.4 434 58.1
ClCG05G007210 Citrullus lanatus HOM05D001043 ORTHO05D006432 2.3e-139 499.6 400 63.8
Duzib268G1183 Durio zibethinus HOM05D001043 ORTHO05D006432 3.0e-139 499.2 417 60.4
MELO3C006795.2 Cucumis melo HOM05D001043 ORTHO05D006432 6.7e-139 498.0 401 62.1
PGR142G0751 Punica granatum HOM05D001043 ORTHO05D006432 3.3e-138 495.7 439 57.2
TPR.G34197 Trifolium pratense HOM05D001043 ORTHO05D006432 5.7e-138 495.0 421 59.1
VMungo1127G0978 Vigna mungo HOM05D001043 ORTHO05D006432 1.3e-137 493.8 421 59.4
Ca_20798_v3 Cicer arietinum L. HOM05D001043 ORTHO05D006432 4.8e-137 491.9 421 59.1
Gorai.005G015800 Gossypium raimondii HOM05D001043 ORTHO05D006432 1.8e-136 490.0 419 58.2
MBI07_g18520_MAGBIO Magnolia biondii HOM05D001043 ORTHO05D006432 2.0e-135 486.5 418 58.9
Gohir.D02G012400 Gossypium hirsutum HOM05D001043 ORTHO05D006432 1.0e-134 484.2 419 57.5
HanXRQChr03g0092911 Helianthus annuus HOM05D001043 ORTHO05D006432 1.9e-133 479.9 417 57.6
CARHR005620 Cardamine hirsuta HOM05D001043 ORTHO05D006432 4.2e-133 478.8 419 57.5
Cc03_g12190 Coffea canephora HOM05D001043 ORTHO05D006432 5.5e-133 478.4 418 56.2
Prupe.1G197800 Prunus persica HOM05D001043 ORTHO05D006432 9.4e-133 477.6 379 64.4
Aqoxy5G00006 Aquilegia oxysepala HOM05D001043 ORTHO05D006432 1.2e-132 477.2 418 57.7
Lsat_1_v5_gn_3_125361 Lactuca sativa HOM05D001043 ORTHO05D006432 1.2e-132 477.2 422 56.6
AL1G16060 Arabidopsis lyrata HOM05D001043 ORTHO05D006432 2.7e-132 476.1 418 56.9
AT1G06110 Arabidopsis thaliana HOM05D001043 ORTHO05D006432 8.0e-132 474.6 419 57.0
Sp1g04910 Schrenkiella parvula HOM05D001043 ORTHO05D006432 1.0e-131 474.2 418 57.2
ECA240G3866 Erigeron canadensis HOM05D001043 ORTHO05D006432 1.4e-131 473.8 424 56.4
Gohir.A02G011600 Gossypium hirsutum HOM05D001043 ORTHO05D006432 8.8e-131 471.1 419 56.1
Thhalv10007687m.g Eutrema salsugineum HOM05D001043 ORTHO05D006432 1.5e-130 470.3 418 56.5
Aa31LG1G7110 Aethionema arabicum HOM05D001043 ORTHO05D006432 4.5e-127 458.8 433 54.7
Carub.0001s0544 Capsella rubella HOM05D001043 ORTHO05D006432 4.5e-127 458.8 418 54.5
A08p36110 Brassica napus HOM05D001043 ORTHO05D006432 1.3e-126 457.2 418 56.2
BraA08t35518Z Brassica rapa HOM05D001043 ORTHO05D006432 1.3e-126 457.2 418 56.2
Sc19g0002850 Simmondsia chinensis HOM05D001043 ORTHO05D006432 1.3e-126 457.2 418 54.5
C08p02400 Brassica napus HOM05D001043 ORTHO05D006432 1.7e-126 456.8 421 56.3
BolC8t47032H Brassica oleracea HOM05D001043 ORTHO05D006432 1.7e-126 456.8 421 56.3
Hma1.2p1_2415F.1_g321720 Hydrangea macrophylla HOM05D001043 ORTHO05D006432 6.5e-126 454.9 381 60.4
Psat7g209600 Pisum sativum HOM05D001043 ORTHO05D006432 2.3e-123 446.4 381 59.1
EL10Ac3g06009 Beta vulgaris HOM05D001043 ORTHO05D006432 5.7e-122 441.8 414 53.1
AUR62002348 Chenopodium quinoa HOM05D001043 ORTHO05D006432 4.8e-121 438.7 414 52.4
Dinv05076 Davidia involucrata HOM05D001043 ORTHO05D006432 3.1e-120 436.0 360 63.1
Phvul.011G053400 Phaseolus vulgaris HOM05D001043 ORTHO05D006432 4.1e-120 435.6 405 56.0
AUR62023842 Chenopodium quinoa HOM05D001043 ORTHO05D006432 7.0e-120 434.9 431 51.0
CDE07G0303 Ceratophyllum demersum HOM05D001043 ORTHO05D006432 3.5e-119 432.6 418 51.4
Hund12412 Selenicereus undatus HOM05D001043 ORTHO05D006432 2.9e-118 429.5 413 52.3
Actinidia26504 Actinidia chinensis HOM05D001043 ORTHO05D006432 1.1e-117 427.6 393 55.5
Migut.G01345 Erythranthe guttata HOM05D001043 ORTHO05D006432 9.4e-117 424.5 386 54.7
ATR0743G191 Amborella trichopoda HOM05D001043 ORTHO05D006432 2.3e-115 419.9 424 50.0
SalBow3G1676 Salvia bowleyana HOM05D001043 ORTHO05D006432 2.6e-114 416.4 343 59.8
CSS0016711 Camellia sinensis var. sinensis HOM05D001043 ORTHO05D006432 6.3e-113 411.8 332 62.7
GSVIVG01010840001 Vitis vinifera HOM05D001043 ORTHO05D006432 1.4e-112 410.6 418 51.9
SHI29125 Sapria himalayana HOM05D001043 ORTHO05D006432 4.1e-112 409.1 420 50.7
Rhsim02G0082300 Rhododendron simsii HOM05D001043 ORTHO05D006432 5.9e-111 405.2 417 54.0
Ah.04g153480 Amaranthus hybridus HOM05D001043 ORTHO05D006432 1.3e-110 404.1 416 51.2
BcaC05g24309 Brassica carinata HOM05D001043 ORTHO05D006432 5.0e-110 402.1 417 51.1
C05p04390 Brassica napus HOM05D001043 ORTHO05D006432 5.0e-110 402.1 417 51.1
BolC5t29212H Brassica oleracea HOM05D001043 ORTHO05D006432 5.0e-110 402.1 417 51.1
Rhsim02G0082200 Rhododendron simsii HOM05D001043 ORTHO05D006432 5.6e-109 398.7 422 52.8
Os11g0265200 Oryza sativa ssp. japonica HOM05D001043 ORTHO05D006432 2.3e-107 393.3 438 48.9
DCAR_028429 Daucus carota HOM05D001043 ORTHO05D006432 1.4e-104 384.0 308 60.7
GSVIVG01010839001 Vitis vinifera HOM05D001043 ORTHO05D006432 1.2e-103 380.9 418 49.5
BcaB02g06824 Brassica carinata HOM05D001043 ORTHO05D006432 1.2e-100 370.9 418 48.1
HPP92_004523 Vanilla planifolia HOM05D001043 ORTHO05D006432 2.1e-100 370.2 442 45.7
HPP92_004532 Vanilla planifolia HOM05D001043 ORTHO05D006432 4.7e-100 369.0 435 45.7
MBI11_g10483_MAGBIO Magnolia biondii HOM05D001043 ORTHO05D006432 2.3e-99 366.7 418 49.3
FAN07G1629 Fragaria x ananassa HOM05D001043 ORTHO05D006432 1.3e-97 360.9 395 50.6
HanXRQChr09g0262091 Helianthus annuus HOM05D001043 ORTHO05D006432 1.7e-94 350.5 307 56.7
SalBow3G2442 Salvia bowleyana HOM05D001043 ORTHO05D006432 5.2e-91 339.0 292 58.6
Zm00001eb168760 Zea mays HOM05D001043 ORTHO05D006432 5.8e-90 335.5 394 45.4
BraA10t42737Z Brassica rapa HOM05D001043 ORTHO05D006432 9.5e-85 318.2 419 45.1
Lj3A33G11 Lonicera japonica HOM05D001043 ORTHO05D006432 6.8e-83 312.0 245 60.4
Ciclev10023406m.g Citrus clementina HOM05D001043 ORTHO05D006432 7.8e-79 298.5 327 51.1
Mapoly0014s0053 Marchantia polymorpha HOM05D001043 ORTHO05D006432 1.7e-78 297.4 417 37.2
SMO203G0209 Selaginella moellendorffii HOM05D001043 ORTHO05D006432 1.2e-76 291.2 404 40.8
Pp3c5_14310 Physcomitrium patens HOM05D001043 ORTHO05D006432 2.8e-76 290.0 417 38.6
QL10p050755 Quercus lobata HOM05D001043 ORTHO05D006432 2.4e-75 287.0 224 65.6
CDE04G0865 Ceratophyllum demersum HOM05D001043 ORTHO05D006432 9.9e-74 281.6 418 38.3
Rhsim02G0082000 Rhododendron simsii HOM05D000432 ORTHO05D000320 9.9e-74 281.6 309 49.2
Hma1.2p1_1466F.1_g285390 Hydrangea macrophylla HOM05D001043 ORTHO05D006432 1.4e-72 277.7 231 60.6
A10p04730 Brassica napus HOM05D001043 ORTHO05D006432 8.7e-70 268.5 419 41.1
CiPaw.02G052100 Carya illinoinensis HOM05D001043 ORTHO05D006432 1.1e-69 268.1 148 84.5
COL.COLO4_10086 Corchorus olitorius HOM05D001043 ORTHO05D006432 6.2e-68 262.3 381 42.5
Os11g0264700 Oryza sativa ssp. japonica HOM05D001043 ORTHO05D006432 1.9e-64 250.8 417 38.4
CiPaw.02G052200 Carya illinoinensis HOM05D001043 ORTHO05D006432 3.4e-58 229.9 177 65.0
Cre01.g005900 Chlamydomonas reinhardtii HOM05D001043 ORTHO05D006432 5.7e-45 186.0 456 31.1
CBR_g726 Chara braunii HOM05D001043 ORTHO05D006432 3.1e-43 180.3 484 27.7
Lj3A33G10 Lonicera japonica HOM05D001043 ORTHO05D006432 7.4e-37 159.1 143 56.6
HanXRQChr09g0250561 Helianthus annuus HOM05D001043 ORTHO05D006432 4.1e-27 126.7 129 53.5
PRCOL_00003688 Prasinoderma coloniale HOM05D001043 ORTHO05D006432 1.3e-25 121.7 465 27.7
SEGI_03011 Sequoiadendron giganteum HOM05D001043 ORTHO05D006432 2.8e-20 104.0 112 47.3
HanXRQChr09g0262081 Helianthus annuus HOM05D001043 ORTHO05D006432 2.9e-17 94.0 66 63.6
PGR142G2310 Punica granatum HOM05D001043 ORTHO05D006432 6.7e-14 82.8 69 56.5
HanXRQChr12g0370191 Helianthus annuus HOM05D001043 ORTHO05D006432 1.6e-10 71.6 65 53.8
MCO09G831 Micromonas commoda HOM05D001043 ORTHO05D006432 1.7e-09 68.2 355 24.5
SEGI_33750 Sequoiadendron giganteum HOM05D001043 ORTHO05D006432 2.5e-08 64.3 95 40.0
MCO05G167 Micromonas commoda HOM05D006234 ORTHO05D007813 3.2e-08 63.9 106 35.8
Phvul.003G201500 Phaseolus vulgaris HOM05D006234 ORTHO05D007813 9.4e-08 62.4 105 35.2
DCAR_028430 Daucus carota HOM05D001043 ORTHO05D006432 1.2e-07 62.0 100 37.0
arahy.Tifrunner.gnm1.ann1.I5PLYK Arachis hypogaea HOM05D006234 ORTHO05D007813 1.6e-07 61.6 115 33.9
Lalb_Chr13g0297731 Lupinus albus HOM05D006234 ORTHO05D007813 1.6e-07 61.6 104 35.6
arahy.Tifrunner.gnm1.ann1.ZL3RZ2 Arachis hypogaea HOM05D006234 ORTHO05D007813 2.7e-07 60.8 115 33.0
Cfa019148 Carpinus fangiana HOM05D006234 ORTHO05D007813 3.6e-07 60.5 101 37.6
Haze_07514 Corylus avellana HOM05D006234 ORTHO05D007813 4.7e-07 60.1 101 37.6
ECA246G1070 Erigeron canadensis HOM05D006234 ORTHO05D007813 4.7e-07 60.1 101 37.6
THA.LOC104809262 Tarenaya hassleriana HOM05D006234 ORTHO05D007813 4.7e-07 60.1 109 37.6
AUR62008196 Chenopodium quinoa HOM05D006234 ORTHO05D007813 6.1e-07 59.7 104 35.6
AUR62030948 Chenopodium quinoa HOM05D006234 ORTHO05D007813 6.1e-07 59.7 104 35.6
MSTRG.9679 Avicennia marina HOM05D006234 ORTHO05D007813 8.0e-07 59.3 101 36.6
CSS0005517 Camellia sinensis var. sinensis HOM05D001043 ORTHO05D006432 8.0e-07 59.3 33 84.8
Ciclev10021475m.g Citrus clementina HOM05D006234 ORTHO05D007813 1.4e-06 58.5 101 35.6
Migut.O00096 Erythranthe guttata HOM05D006234 ORTHO05D007813 1.4e-06 58.5 101 36.6
Hma1.2p1_0592F.1_g185420 Hydrangea macrophylla HOM05D006234 ORTHO05D007813 1.4e-06 58.5 101 37.6
Lsat_1_v5_gn_5_15020 Lactuca sativa HOM05D006234 ORTHO05D007813 1.8e-06 58.2 101 36.6
PGR044G0892 Punica granatum HOM05D006234 ORTHO05D007813 1.8e-06 58.2 101 36.6
unitig_60.g25412 Utricularia gibba HOM05D006234 ORTHO05D007813 2.3e-06 57.8 101 35.6
EL10Ac5g10733 Beta vulgaris HOM05D006234 ORTHO05D007813 3.0e-06 57.4 104 36.5
Cc04_g12080 Coffea canephora HOM05D006234 ORTHO05D007813 3.0e-06 57.4 101 36.6
Oeu020907.1 Olea europaea HOM05D006234 ORTHO05D007813 3.0e-06 57.4 101 37.6
Aqoxy3G02888 Aquilegia oxysepala HOM05D006234 ORTHO05D007813 4.0e-06 57.0 101 36.6
PSO063G7211 Papaver somniferum HOM05D006234 ORTHO05D007813 4.0e-06 57.0 101 36.6
PSO832G4587 Papaver somniferum HOM05D006234 ORTHO05D007813 4.0e-06 57.0 101 36.6
Hund09446 Selenicereus undatus HOM05D006234 ORTHO05D007813 4.0e-06 57.0 101 37.6
Ah.02g110560 Amaranthus hybridus HOM05D006234 ORTHO05D007813 5.2e-06 56.6 104 34.6
Eucgr.K02833 Eucalyptus grandis HOM05D006234 ORTHO05D007813 5.2e-06 56.6 101 36.6
MD14G1178600 Malus domestica HOM05D006234 ORTHO05D007813 5.2e-06 56.6 101 37.6
Rhsim12G0165600 Rhododendron simsii HOM05D006234 ORTHO05D007813 5.2e-06 56.6 101 37.6
CSS0047520 Camellia sinensis var. sinensis HOM05D006234 ORTHO05D007813 6.8e-06 56.2 101 36.6
CSS0048541 Camellia sinensis var. sinensis HOM05D006234 ORTHO05D007813 6.8e-06 56.2 101 36.6
CDE04G1656 Ceratophyllum demersum HOM05D006234 ORTHO05D007813 6.8e-06 56.2 101 37.6
Lj9A446T64 Lonicera japonica HOM05D006234 ORTHO05D007813 6.8e-06 56.2 101 36.6
QL10p010716 Quercus lobata HOM05D006234 ORTHO05D007813 6.8e-06 56.2 101 35.6
QL10p011029 Quercus lobata HOM05D006234 ORTHO05D007813 6.8e-06 56.2 101 35.6
SGA_v2.0_scaffold114G31825 Striga asiatica HOM05D006234 ORTHO05D007813 6.8e-06 56.2 101 35.6
Peaxi162Scf00255g01121 Petunia axillaris HOM05D006234 ORTHO05D007813 8.8e-06 55.8 101 37.6


User provided reference genes

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