Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.01G095500 Carya illinoinensis HOM05D001295 ORTHO05D005319 1.7e-221 772.3 377 100.0
Cfa015203 Carpinus fangiana HOM05D001295 ORTHO05D005319 2.6e-153 545.8 378 72.8
QL10p051312 Quercus lobata HOM05D001295 ORTHO05D005319 4.7e-147 525.0 477 58.7
GSVIVG01004102001 Vitis vinifera HOM05D001295 ORTHO05D005319 4.9e-144 515.0 378 68.5
Prupe.1G199500 Prunus persica HOM05D001295 ORTHO05D005319 8.3e-144 514.2 382 68.6
Atru.chr4.1272 Acer truncatum HOM05D001295 ORTHO05D005319 1.6e-139 500.0 384 65.6
Manes.11G126000 Manihot esculenta HOM05D001295 ORTHO05D005319 2.3e-138 496.1 381 64.0
PGSC0003DMG400026920 Solanum tuberosum HOM05D001295 ORTHO05D005319 7.5e-137 491.1 377 63.9
Thecc.04G173300 Theobroma cacao HOM05D001295 ORTHO05D005319 1.3e-136 490.3 377 64.7
CSS0006680 Camellia sinensis var. sinensis HOM05D001295 ORTHO05D005319 1.7e-136 490.0 359 68.2
Potri.007G132100 Populus trichocarpa HOM05D001295 ORTHO05D005319 1.7e-136 490.0 383 62.7
CSS0045865 Camellia sinensis var. sinensis HOM05D001295 ORTHO05D005319 2.2e-136 489.6 359 68.0
VMungo1080G0958 Vigna mungo HOM05D001295 ORTHO05D005319 4.9e-136 488.4 384 66.1
MD04G1046100 Malus domestica HOM05D001295 ORTHO05D005319 2.4e-135 486.1 386 64.0
TPR.G6512 Trifolium pratense HOM05D001295 ORTHO05D005319 3.2e-135 485.7 380 64.7
Psat5g290520 Pisum sativum HOM05D001295 ORTHO05D005319 7.1e-135 484.6 379 64.6
PSO837G0039 Papaver somniferum HOM05D001295 ORTHO05D005319 9.2e-135 484.2 382 62.8
Sopen06g029480 Solanum pennellii HOM05D001295 ORTHO05D005319 1.2e-134 483.8 377 62.9
CAN.G65.159 Capsicum annuum HOM05D001295 ORTHO05D005319 2.1e-134 483.0 377 62.1
Peaxi162Scf00180g00045 Petunia axillaris HOM05D001295 ORTHO05D005319 2.7e-134 482.6 377 62.6
TAR633G1947 Trochodendron aralioides HOM05D001295 ORTHO05D005319 2.7e-134 482.6 377 65.3
Medtr2g099125 Medicago truncatula HOM05D001295 ORTHO05D005319 6.6e-133 478.0 380 64.5
COL.COLO4_09274 Corchorus olitorius HOM05D001295 ORTHO05D005319 8.6e-133 477.6 377 62.9
Solyc06g073130.4 Solanum lycopersicum HOM05D001295 ORTHO05D005319 7.3e-132 474.6 397 59.9
Lj3g0016601 Lotus japonicus HOM05D001295 ORTHO05D005319 1.6e-131 473.4 382 64.1
Glyma.15G028500 Glycine max HOM05D001295 ORTHO05D005319 1.4e-130 470.3 384 63.5
Lsat_1_v5_gn_3_110661 Lactuca sativa HOM05D001295 ORTHO05D005319 5.8e-129 464.9 381 60.4
Gorai.005G126300 Gossypium raimondii HOM05D001295 ORTHO05D005319 3.7e-128 462.2 379 63.1
Sed0017723 Sechium edule HOM05D001295 ORTHO05D005319 3.2e-127 459.1 377 59.4
Oeu020777.1 Olea europaea HOM05D001295 ORTHO05D005319 3.5e-126 455.7 383 60.3
Nitab4.5_0002553g0060 Nicotiana tabacum HOM05D001295 ORTHO05D005319 8.6e-125 451.1 437 54.2
Ca_01246_v3 Cicer arietinum L. HOM05D001295 ORTHO05D005319 1.1e-124 450.7 373 62.5
Nn1g09559 Nelumbo nucifera HOM05D001295 ORTHO05D005319 1.1e-124 450.7 333 64.3
HanXRQChr13g0419451 Helianthus annuus HOM05D001295 ORTHO05D005319 2.5e-124 449.5 381 60.9
Cc03_g12290 Coffea canephora HOM05D001295 ORTHO05D005319 4.3e-124 448.7 381 59.8
PGR142G2463 Punica granatum HOM05D001295 ORTHO05D005319 8.1e-123 444.5 382 59.2
arahy.Tifrunner.gnm1.ann1.982DXJ Arachis hypogaea HOM05D001295 ORTHO05D005319 1.5e-121 440.3 360 61.9
Migut.G01307 Erythranthe guttata HOM05D001295 ORTHO05D005319 4.9e-120 435.3 377 58.4
DCAR_028425 Daucus carota HOM05D001295 ORTHO05D005319 8.7e-117 424.5 382 57.9
ClCG06G001010 Citrullus lanatus HOM05D001295 ORTHO05D005319 1.9e-116 423.3 378 56.1
THA.LOC104803837 Tarenaya hassleriana HOM05D001295 ORTHO05D005319 2.1e-115 419.9 406 53.4
Gohir.D02G111400 Gossypium hirsutum HOM05D001295 ORTHO05D005319 3.6e-115 419.1 378 58.7
AL4G42200 Arabidopsis lyrata HOM05D001295 ORTHO05D005319 2.4e-114 416.4 386 54.1
Thhalv10001762m.g Eutrema salsugineum HOM05D001295 ORTHO05D005319 4.0e-114 415.6 378 53.2
ATR0743G262 Amborella trichopoda HOM05D001295 ORTHO05D005319 5.3e-114 415.2 378 54.0
SalBow8G2942 Salvia bowleyana HOM05D001295 ORTHO05D005319 6.9e-114 414.8 389 55.5
Carub.0004s2592 Capsella rubella HOM05D001295 ORTHO05D005319 2.0e-113 413.3 390 52.8
BraA05t19365Z Brassica rapa HOM05D001295 ORTHO05D005319 1.4e-111 407.1 387 53.7
AUR62002356 Chenopodium quinoa HOM05D001295 ORTHO05D005319 1.6e-110 403.7 446 49.1
Sc21g0002910 Simmondsia chinensis HOM05D001295 ORTHO05D005319 1.7e-109 400.2 374 56.7
Nitab4.5_0001586g0250 Nicotiana tabacum HOM05D001295 ORTHO05D005319 2.3e-109 399.8 337 58.5
Aa31LG1G25200 Aethionema arabicum HOM05D001295 ORTHO05D005319 1.9e-108 396.7 384 52.1
arahy.Tifrunner.gnm1.ann1.CA0DYB Arachis hypogaea HOM05D001295 ORTHO05D005319 1.6e-107 393.7 386 54.7
Hund12401 Selenicereus undatus HOM05D001295 ORTHO05D005319 8.1e-107 391.3 367 56.1
arahy.Tifrunner.gnm1.ann1.1HI5HP Arachis hypogaea HOM05D001295 ORTHO05D005319 4.5e-105 385.6 386 54.1
Gohir.A02G093300 Gossypium hirsutum HOM05D001295 ORTHO05D005319 1.3e-104 384.0 378 54.8
Duzib212G0222 Durio zibethinus HOM05D001295 ORTHO05D005319 8.4e-104 381.3 391 54.5
EL10Ac3g06020 Beta vulgaris HOM05D001295 ORTHO05D005319 1.4e-103 380.6 401 52.1
QL10p051666 Quercus lobata HOM05D001295 ORTHO05D005319 1.4e-103 380.6 260 73.1
HPP92_007597 Vanilla planifolia HOM05D001295 ORTHO05D005319 4.2e-103 379.0 373 49.3
A05p03770 Brassica napus HOM05D001295 ORTHO05D005319 9.3e-103 377.9 359 52.6
Sp4g25550 Schrenkiella parvula HOM05D001295 ORTHO05D005319 6.0e-102 375.2 358 53.4
BolC4t22080H Brassica oleracea HOM05D001295 ORTHO05D005319 8.7e-101 371.3 360 51.9
BcaC02g12392 Brassica carinata HOM05D001295 ORTHO05D005319 1.1e-100 370.9 360 51.9
C04p04470 Brassica napus HOM05D001295 ORTHO05D005319 1.1e-100 370.9 360 51.9
BcaB02g08938 Brassica carinata HOM05D001295 ORTHO05D005319 9.6e-100 367.9 362 51.9
Migut.G01305 Erythranthe guttata HOM05D001295 ORTHO05D005319 2.8e-99 366.3 379 52.0
Rhsim09G0020700 Rhododendron simsii HOM05D001295 ORTHO05D005319 1.4e-95 354.0 423 47.5
MELO3C022439.2 Cucumis melo HOM05D001295 ORTHO05D005319 2.5e-95 353.2 374 49.7
Migut.G01326 Erythranthe guttata HOM05D001295 ORTHO05D005319 3.9e-93 345.9 299 57.9
Actinidia34573 Actinidia chinensis HOM05D001295 ORTHO05D005319 8.7e-93 344.7 276 65.6
Dinv05087 Davidia involucrata HOM05D001295 ORTHO05D005319 1.5e-92 344.0 275 65.8
Phvul.005G154600 Phaseolus vulgaris HOM05D001295 ORTHO05D005319 1.9e-92 343.6 307 61.6
RhsimUnG0137700 Rhododendron simsii HOM05D001295 ORTHO05D005319 1.5e-89 334.0 229 69.9
PSO017G5265 Papaver somniferum HOM05D001295 ORTHO05D005319 1.1e-87 327.8 277 61.4
SGA_v2.0_scaffold12G06175 Striga asiatica HOM05D001295 ORTHO05D005319 1.4e-82 310.8 359 47.9
Aqoxy5G00377 Aquilegia oxysepala HOM05D001295 ORTHO05D005319 6.9e-82 308.5 276 57.2
vmacro00676 Vaccinium macrocarpon HOM05D001295 ORTHO05D005319 7.7e-81 305.1 213 70.0
AagrBONN_evm.TU.Sc2ySwM_228.190 Anthoceros agrestis HOM05D001295 ORTHO05D005319 1.3e-80 304.3 386 43.8
AUR62023829 Chenopodium quinoa HOM05D001295 ORTHO05D005319 2.2e-80 303.5 384 44.8
Lalb_Chr14g0372571 Lupinus albus HOM05D001295 ORTHO05D005319 2.9e-80 303.1 276 56.5
Eucgr.H00340 Eucalyptus grandis HOM05D001295 ORTHO05D005319 3.8e-80 302.8 281 58.0
CsaV3_6G006850 Cucumis sativus L. HOM05D005724 ORTHO05D006636 1.0e-77 294.7 273 53.8
Mapoly0209s0009 Marchantia polymorpha HOM05D001295 ORTHO05D005319 1.4e-77 294.3 381 42.8
Sabra07G0119100 Salix brachista HOM05D001295 ORTHO05D005319 1.5e-76 290.8 369 44.4
MSTRG.4291 Avicennia marina HOM05D001295 ORTHO05D005319 7.4e-76 288.5 276 56.9
Lalb_Chr22g0352051 Lupinus albus HOM05D001295 ORTHO05D005319 1.9e-71 273.9 259 56.8
unitig_37.g12026 Utricularia gibba HOM05D001295 ORTHO05D005319 2.5e-71 273.5 215 61.4
Ciclev10021666m.g Citrus clementina HOM05D001295 ORTHO05D005319 1.6e-70 270.8 258 56.2
TWI15G0408 Tripterygium wilfordii HOM05D001295 ORTHO05D005319 1.1e-68 264.6 261 55.6
SMO337G0100 Selaginella moellendorffii HOM05D001295 ORTHO05D005319 9.7e-68 261.5 261 50.6
Sabra07G0107500 Salix brachista HOM05D001295 ORTHO05D005319 8.2e-67 258.5 250 57.6
COL.COLO4_21796 Corchorus olitorius HOM05D001295 ORTHO05D005319 2.0e-65 253.8 245 55.1
Gohir.D08G098300 Gossypium hirsutum HOM05D001295 ORTHO05D005319 2.2e-64 250.4 237 56.1
CARHR138550 Cardamine hirsuta HOM05D001295 ORTHO05D005319 2.9e-64 250.0 287 46.7
Gorai.004G105900 Gossypium raimondii HOM05D001295 ORTHO05D005319 5.0e-64 249.2 237 55.7
ECA240G1882 Erigeron canadensis HOM05D001295 ORTHO05D005319 8.5e-64 248.4 199 60.3
Sabra07G0119300 Salix brachista HOM05D001295 ORTHO05D005319 4.7e-62 242.7 241 56.4
FAN27G1301 Fragaria x ananassa HOM05D001295 ORTHO05D005319 1.0e-61 241.5 245 53.5
FAN24G0827 Fragaria x ananassa HOM05D001295 ORTHO05D005319 4.0e-61 239.6 245 53.1
FvH4_2g24830 Fragaria vesca HOM05D001295 ORTHO05D005319 7.5e-60 235.3 245 52.7
Ciclev10021418m.g Citrus clementina HOM05D001295 ORTHO05D005319 1.3e-59 234.6 290 47.9
RcHm_v2.0_Chr6g0292651 Rosa chinensis HOM05D001295 ORTHO05D005319 1.4e-58 231.1 245 53.5
Haze_01445 Corylus avellana HOM05D001295 ORTHO05D005319 5.3e-58 229.2 144 77.1
Gohir.A08G092500 Gossypium hirsutum HOM05D001295 ORTHO05D005319 1.7e-56 224.2 234 53.8
Manes.04G047700 Manihot esculenta HOM05D001295 ORTHO05D005319 6.5e-56 222.2 232 50.9
Lj3C135G1 Lonicera japonica HOM05D001295 ORTHO05D005319 4.2e-55 219.5 204 58.3
Sed0000422 Sechium edule HOM05D001295 ORTHO05D005319 5.5e-55 219.2 246 50.8
C05p63460 Brassica napus HOM05D001295 ORTHO05D005319 1.2e-54 218.0 244 51.2
FAN15G1214 Fragaria x ananassa HOM05D001295 ORTHO05D005319 1.2e-54 218.0 247 51.4
BolC5t35010H Brassica oleracea HOM05D001295 ORTHO05D005319 1.6e-54 217.6 244 50.8
A05p43870 Brassica napus HOM05D001295 ORTHO05D005319 2.1e-54 217.2 244 50.4
BraA05t23124Z Brassica rapa HOM05D001295 ORTHO05D005319 3.6e-54 216.5 244 49.6
AL3G12950 Arabidopsis lyrata HOM05D001295 ORTHO05D005319 6.1e-54 215.7 244 50.4
CARHR077360 Cardamine hirsuta HOM05D001295 ORTHO05D005319 5.2e-53 212.6 244 48.4
AT3G03320 Arabidopsis thaliana HOM05D001295 ORTHO05D005319 1.5e-52 211.1 244 49.2
THA.LOC104820845 Tarenaya hassleriana HOM05D001295 ORTHO05D005319 1.5e-52 211.1 245 49.0
BcaC05g30303 Brassica carinata HOM05D001295 ORTHO05D005319 2.6e-52 210.3 245 49.8
Thhalv10021391m.g Eutrema salsugineum HOM05D001295 ORTHO05D005319 3.4e-52 209.9 246 49.2
Sp3g02350 Schrenkiella parvula HOM05D001295 ORTHO05D005319 2.2e-51 207.2 244 48.4
ClCG07G011710 Citrullus lanatus HOM05D001295 ORTHO05D005319 1.1e-50 204.9 232 51.7
Zm00001eb064040 Zea mays HOM05D001295 ORTHO05D005319 1.1e-50 204.9 187 54.0
CsaV3_4G002500 Cucumis sativus L. HOM05D001295 ORTHO05D005319 5.4e-50 202.6 234 52.1
Carub.0003s0249 Capsella rubella HOM05D001295 ORTHO05D005319 2.0e-49 200.7 244 48.8
Sabra07G0119200 Salix brachista HOM05D001295 ORTHO05D005319 2.0e-49 200.7 204 52.0
Thecc.04G173200 Theobroma cacao HOM05D001295 ORTHO05D005319 7.7e-49 198.7 194 58.2
Migut.G01331 Erythranthe guttata HOM05D001295 ORTHO05D005319 8.5e-48 195.3 198 54.5
Cpa.g.sc9.324 Carica papaya HOM05D001295 ORTHO05D005319 1.9e-47 194.1 130 73.1
Aa31LG5G13780 Aethionema arabicum HOM05D001295 ORTHO05D005319 2.0e-44 184.1 261 42.1
Pp3c13_1370 Physcomitrium patens HOM05D001295 ORTHO05D005319 1.3e-40 171.4 276 38.0
Hma1.2p1_0401F.1_g144800 Hydrangea macrophylla HOM05D001295 ORTHO05D005319 1.9e-39 167.5 153 59.5
AT2G43465 Arabidopsis thaliana HOM05D001295 ORTHO05D005319 6.1e-38 162.5 207 44.0
C01p44730 Brassica napus HOM05D001295 ORTHO05D005319 4.0e-37 159.8 225 38.7
Lj3g0015879 Lotus japonicus HOM05D001295 ORTHO05D005319 3.2e-34 150.2 159 54.7
Haze_01447 Corylus avellana HOM05D001295 ORTHO05D005319 1.2e-33 148.3 72 90.3
A09p42860 Brassica napus HOM05D001295 ORTHO05D005319 5.9e-33 146.0 215 40.0
vmacro00675 Vaccinium macrocarpon HOM05D001295 ORTHO05D005319 8.6e-32 142.1 166 47.0
SalBow5G4879 Salvia bowleyana HOM05D001295 ORTHO05D005319 1.1e-26 125.2 160 46.2
Lalb_Chr14g0372561 Lupinus albus HOM05D001295 ORTHO05D005319 7.8e-25 119.0 64 76.6
BolC2t06464H Brassica oleracea HOM05D001295 ORTHO05D005319 1.3e-24 118.2 258 33.3
Glyma.13G345802 Glycine max HOM05D001295 ORTHO05D005319 3.0e-24 117.1 124 52.4
Lj3A83T16 Lonicera japonica HOM05D001295 ORTHO05D005319 1.1e-21 108.6 65 76.9
Sabra17G0001700 Salix brachista HOM05D001295 ORTHO05D005319 3.3e-15 87.0 103 46.6
Sabra17G0015200 Salix brachista HOM05D001295 ORTHO05D005319 2.3e-13 80.9 178 33.7
Medtr2g027210 Medicago truncatula HOM05D001295 ORTHO05D005319 1.2e-12 78.6 81 51.9
MELO3C001160.2 Cucumis melo HOM05D001295 ORTHO05D005319 3.4e-12 77.0 55 67.3
CBR_g21778 Chara braunii HOM05D001295 ORTHO05D005319 9.9e-12 75.5 117 41.0
Cre16.g668650 Chlamydomonas reinhardtii HOM05D001295 ORTHO05D005319 4.9e-11 73.2 137 32.8
AL4G36180 Arabidopsis lyrata HOM05D001295 ORTHO05D005319 3.2e-10 70.5 120 38.3
QL01p028728 Quercus lobata HOM05D001295 ORTHO05D005319 2.7e-09 67.4 51 60.8
Sabra17G0000500 Salix brachista HOM05D001295 ORTHO05D005319 3.5e-09 67.0 80 41.2
Sabra17G0001500 Salix brachista HOM05D001295 ORTHO05D005319 4.6e-09 66.6 76 40.8


User provided reference genes

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