Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.01G092000 Carya illinoinensis HOM05D003886 ORTHO05D004587 3.4e-261 904.4 454 100.0
QL05p085089 Quercus lobata HOM05D003886 ORTHO05D004587 9.8e-232 806.6 462 87.9
Cfa002157 Carpinus fangiana HOM05D003886 ORTHO05D004587 6.3e-231 803.9 456 88.2
Prupe.3G028400 Prunus persica HOM05D003886 ORTHO05D004587 1.4e-217 759.6 465 82.8
Thecc.06G049000 Theobroma cacao HOM05D003886 ORTHO05D004587 7.0e-214 747.3 457 82.5
MD09G1170200 Malus domestica HOM05D003886 ORTHO05D004587 1.9e-211 739.2 452 83.0
Gorai.011G001300 Gossypium raimondii HOM05D003886 ORTHO05D004587 1.2e-210 736.5 456 81.4
Gohir.D10G001000 Gossypium hirsutum HOM05D003886 ORTHO05D004587 3.6e-210 734.9 456 81.1
Duzib235G0758 Durio zibethinus HOM05D003886 ORTHO05D004587 6.2e-210 734.2 456 81.8
MD17G1156900 Malus domestica HOM05D003886 ORTHO05D004587 6.2e-210 734.2 459 80.8
Manes.15G112100 Manihot esculenta HOM05D003886 ORTHO05D004587 6.2e-210 734.2 458 81.2
Gohir.A10G000800 Gossypium hirsutum HOM05D003886 ORTHO05D004587 2.3e-209 732.3 456 81.1
CANSAT01G1565 Cannabis sativa HOM05D003886 ORTHO05D004587 7.5e-208 727.2 465 79.4
TWI75G0340 Tripterygium wilfordii HOM05D003886 ORTHO05D004587 7.5e-208 727.2 457 80.1
Manes.03G095300 Manihot esculenta HOM05D003886 ORTHO05D004587 1.9e-206 722.6 457 81.0
GSVIVG01000280001 Vitis vinifera HOM05D003886 ORTHO05D004587 5.4e-206 721.1 456 79.2
Atru.chr3.1841 Acer truncatum HOM05D003886 ORTHO05D004587 9.2e-206 720.3 471 77.3
TWI12G0365 Tripterygium wilfordii HOM05D003886 ORTHO05D004587 9.2e-206 720.3 455 78.7
FAN09G1502 Fragaria x ananassa HOM05D003886 ORTHO05D004587 1.2e-205 719.9 460 79.6
Dinv24535 Davidia involucrata HOM05D003886 ORTHO05D004587 3.5e-205 718.4 455 78.9
FAN05G1128 Fragaria x ananassa HOM05D003886 ORTHO05D004587 2.3e-204 715.7 460 79.3
RcHm_v2.0_Chr2g0148321 Rosa chinensis HOM05D003886 ORTHO05D004587 8.6e-204 713.8 462 79.2
FAN14G1097 Fragaria x ananassa HOM05D003886 ORTHO05D004587 9.5e-203 710.3 460 79.1
FAN14G2559 Fragaria x ananassa HOM05D003886 ORTHO05D004587 3.6e-202 708.4 460 79.1
FvH4_6g36310 Fragaria vesca HOM05D003886 ORTHO05D004587 8.1e-202 707.2 460 79.1
Dinv30973 Davidia involucrata HOM05D003886 ORTHO05D004587 1.1e-201 706.8 437 80.8
Lj2g0000910 Lotus japonicus HOM05D003886 ORTHO05D004587 1.8e-201 706.1 456 77.2
Actinidia17720 Actinidia chinensis HOM05D003886 ORTHO05D004587 5.8e-200 701.0 455 77.6
Glyma.19G049500 Glycine max HOM05D003886 ORTHO05D004587 9.9e-200 700.3 456 76.3
VMungo0464G1314 Vigna mungo HOM05D003886 ORTHO05D004587 2.9e-199 698.7 457 77.2
THA.LOC104808112 Tarenaya hassleriana HOM05D003886 ORTHO05D004587 1.1e-198 696.8 458 76.6
Glyma.13G045600 Glycine max HOM05D003886 ORTHO05D004587 5.4e-198 694.5 456 75.7
Lalb_Chr21g0317801 Lupinus albus HOM05D003886 ORTHO05D004587 7.1e-198 694.1 456 75.7
COL.COLO4_26802 Corchorus olitorius HOM05D003886 ORTHO05D004587 1.6e-197 693.0 456 76.8
MELO3C015232.2 Cucumis melo HOM05D003886 ORTHO05D004587 2.1e-197 692.6 455 75.8
Sabra14G0003200 Salix brachista HOM05D003886 ORTHO05D004587 2.1e-197 692.6 477 76.5
Rhsim11G0111800 Rhododendron simsii HOM05D003886 ORTHO05D004587 1.0e-196 690.3 455 76.0
CsaV3_1G038140 Cucumis sativus L. HOM05D003886 ORTHO05D004587 3.0e-196 688.7 455 75.4
Phvul.004G065600 Phaseolus vulgaris HOM05D003886 ORTHO05D004587 5.1e-196 688.0 458 76.2
Ca_17750_v3 Cicer arietinum L. HOM05D003886 ORTHO05D004587 1.1e-195 686.8 458 74.7
Eucgr.F04066 Eucalyptus grandis HOM05D003886 ORTHO05D004587 1.9e-195 686.0 453 75.3
Nn7g35782 Nelumbo nucifera HOM05D003886 ORTHO05D004587 2.1e-194 682.6 448 74.6
Sp5g34070 Schrenkiella parvula HOM05D003886 ORTHO05D004587 2.1e-194 682.6 457 75.7
Potri.014G000600 Populus trichocarpa HOM05D003886 ORTHO05D004587 4.7e-194 681.4 478 75.5
Migut.N00997 Erythranthe guttata HOM05D003886 ORTHO05D004587 5.2e-193 677.9 456 75.7
Duzib192G0492 Durio zibethinus HOM05D003886 ORTHO05D004587 1.3e-191 673.3 456 76.1
PGR102G2920 Punica granatum HOM05D003886 ORTHO05D004587 2.2e-191 672.5 469 74.0
vmacro01641 Vaccinium macrocarpon HOM05D003886 ORTHO05D004587 2.9e-191 672.2 491 71.9
Aa31LG4G1970 Aethionema arabicum HOM05D003886 ORTHO05D004587 4.9e-191 671.4 438 76.9
MSTRG.27896 Avicennia marina HOM05D003886 ORTHO05D004587 1.9e-190 669.5 449 75.5
CSS0008969 Camellia sinensis var. sinensis HOM05D003886 ORTHO05D004587 2.4e-190 669.1 449 74.8
Sed0016198 Sechium edule HOM05D003886 ORTHO05D004587 5.4e-190 667.9 455 74.1
Medtr8g090035 Medicago truncatula HOM05D003886 ORTHO05D004587 1.6e-189 666.4 458 74.0
Ciclev10020009m.g Citrus clementina HOM05D003886 ORTHO05D004587 2.7e-189 665.6 474 73.8
Thhalv10018536m.g Eutrema salsugineum HOM05D003886 ORTHO05D004587 4.6e-189 664.8 459 74.7
BcaC08g47466 Brassica carinata HOM05D003886 ORTHO05D004587 3.9e-188 661.8 458 73.1
A07p44160 Brassica napus HOM05D003886 ORTHO05D004587 5.1e-188 661.4 458 72.9
CSS0041623 Camellia sinensis var. sinensis HOM05D003886 ORTHO05D004587 1.1e-187 660.2 447 74.9
BolC6t40307H Brassica oleracea HOM05D003886 ORTHO05D004587 1.5e-187 659.8 458 72.9
Carub.0002s2589 Capsella rubella HOM05D003886 ORTHO05D004587 4.3e-187 658.3 457 72.4
C06p30220 Brassica napus HOM05D003886 ORTHO05D004587 5.6e-187 657.9 453 74.4
BolC6t38185H Brassica oleracea HOM05D003886 ORTHO05D004587 5.6e-187 657.9 453 74.4
BcaC08g45391 Brassica carinata HOM05D003886 ORTHO05D004587 7.3e-187 657.5 453 74.2
Lalb_Chr04g0257491 Lupinus albus HOM05D003886 ORTHO05D004587 7.3e-187 657.5 451 73.8
TAR626G1553 Trochodendron aralioides HOM05D003886 ORTHO05D004587 7.3e-187 657.5 449 72.8
BraA07t31924Z Brassica rapa HOM05D003886 ORTHO05D004587 9.6e-187 657.1 454 73.1
Lalb_Chr06g0174541 Lupinus albus HOM05D003886 ORTHO05D004587 2.8e-186 655.6 453 74.2
AL2G39480 Arabidopsis lyrata HOM05D003886 ORTHO05D004587 6.2e-186 654.4 459 72.5
BcaB02g07192 Brassica carinata HOM05D003886 ORTHO05D004587 8.1e-186 654.1 448 73.7
Cc02_g36820 Coffea canephora HOM05D003886 ORTHO05D004587 8.1e-186 654.1 454 72.9
Psat7g057280 Pisum sativum HOM05D003886 ORTHO05D004587 1.1e-185 653.7 459 72.8
C06p52890 Brassica napus HOM05D003886 ORTHO05D004587 1.4e-185 653.3 459 72.5
Oeu000173.4 Olea europaea HOM05D003886 ORTHO05D004587 5.2e-185 651.4 535 63.4
TAR624G0406 Trochodendron aralioides HOM05D003886 ORTHO05D004587 6.9e-185 651.0 435 75.9
arahy.Tifrunner.gnm1.ann1.Z0Z3SY Arachis hypogaea HOM05D003886 ORTHO05D004587 2.0e-184 649.4 485 69.1
AT1G79020 Arabidopsis thaliana HOM05D003886 ORTHO05D004587 2.6e-184 649.0 457 71.8
AUR62016582 Chenopodium quinoa HOM05D003886 ORTHO05D004587 2.6e-184 649.0 446 73.3
EL10Ac9g21865 Beta vulgaris HOM05D003886 ORTHO05D004587 5.8e-184 647.9 452 71.2
AUR62011474 Chenopodium quinoa HOM05D003886 ORTHO05D004587 9.9e-184 647.1 453 72.8
BraA07t30377Z Brassica rapa HOM05D003886 ORTHO05D004587 8.4e-183 644.0 455 74.1
Sc24g0001760 Simmondsia chinensis HOM05D003886 ORTHO05D004587 1.4e-182 643.3 451 72.5
Actinidia11710 Actinidia chinensis HOM05D003886 ORTHO05D004587 9.3e-182 640.6 427 76.1
Thhalv10007658m.g Eutrema salsugineum HOM05D003886 ORTHO05D004587 1.0e-180 637.1 449 73.5
MSTRG.5179 Avicennia marina HOM05D003886 ORTHO05D004587 8.7e-180 634.0 428 74.5
Carub.0001s1642 Capsella rubella HOM05D003886 ORTHO05D004587 1.9e-179 632.9 448 73.0
Ah.01g020350 Amaranthus hybridus HOM05D003886 ORTHO05D004587 2.5e-179 632.5 450 71.1
A07p27360 Brassica napus HOM05D003886 ORTHO05D004587 2.5e-179 632.5 451 72.9
Peaxi162Scf00048g01418 Petunia axillaris HOM05D003886 ORTHO05D004587 2.5e-179 632.5 446 71.5
CAN.G809.69 Capsicum annuum HOM05D003886 ORTHO05D004587 5.6e-179 631.3 454 70.0
HanXRQChr17g0545561 Helianthus annuus HOM05D003886 ORTHO05D004587 2.1e-178 629.4 450 72.7
A02p22460 Brassica napus HOM05D003886 ORTHO05D004587 3.6e-178 628.6 452 72.3
Sopen02g026260 Solanum pennellii HOM05D003886 ORTHO05D004587 1.4e-177 626.7 454 69.4
Solyc02g081650.3 Solanum lycopersicum HOM05D003886 ORTHO05D004587 1.8e-177 626.3 454 69.6
C02p36140 Brassica napus HOM05D003886 ORTHO05D004587 6.9e-177 624.4 454 72.2
PGSC0003DMG400017734 Solanum tuberosum HOM05D003886 ORTHO05D004587 6.9e-177 624.4 455 69.9
Oeu010600.1 Olea europaea HOM05D003886 ORTHO05D004587 3.4e-176 622.1 451 69.0
Solyc02g032300.3 Solanum lycopersicum HOM05D003886 ORTHO05D004587 4.5e-176 621.7 443 71.1
BraA02t07251Z Brassica rapa HOM05D003886 ORTHO05D004587 7.6e-176 620.9 451 72.7
Sopen02g010650 Solanum pennellii HOM05D003886 ORTHO05D004587 7.6e-176 620.9 443 71.1
Peaxi162Scf00198g01528 Petunia axillaris HOM05D003886 ORTHO05D004587 1.3e-175 620.2 455 69.2
BcaC03g15859 Brassica carinata HOM05D003886 ORTHO05D004587 3.8e-175 618.6 454 71.6
HanXRQChr17g0570801 Helianthus annuus HOM05D003886 ORTHO05D004587 3.8e-175 618.6 451 69.8
MBI14_g11787_MAGBIO Magnolia biondii HOM05D003886 ORTHO05D004587 1.9e-174 616.3 415 73.3
Nitab4.5_0013482g0010 Nicotiana tabacum HOM05D003886 ORTHO05D004587 7.1e-174 614.4 454 68.7
Nitab4.5_0006794g0050 Nicotiana tabacum HOM05D003886 ORTHO05D004587 1.2e-173 613.6 452 69.0
AT1G16690 Arabidopsis thaliana HOM05D003886 ORTHO05D004587 1.8e-172 609.8 449 70.8
AL1G28850 Arabidopsis lyrata HOM05D003886 ORTHO05D004587 3.9e-172 608.6 451 70.7
TPR.G6290 Trifolium pratense HOM05D003886 ORTHO05D004587 1.3e-170 603.6 421 73.6
HPP92_015734 Vanilla planifolia HOM05D003886 ORTHO05D004587 4.8e-170 601.7 447 68.5
DCAR_022329 Daucus carota HOM05D003886 ORTHO05D004587 6.2e-170 601.3 460 69.6
CARHR017150 Cardamine hirsuta HOM05D003886 ORTHO05D004587 1.4e-169 600.1 451 69.0
ECA234G0089 Erigeron canadensis HOM05D003886 ORTHO05D004587 2.4e-169 599.4 448 69.0
Sp1g14830 Schrenkiella parvula HOM05D003886 ORTHO05D004587 2.0e-168 596.3 449 69.9
PSO782G4625 Papaver somniferum HOM05D003886 ORTHO05D004587 2.9e-167 592.4 440 72.5
PSO063G1610 Papaver somniferum HOM05D003886 ORTHO05D004587 1.6e-165 586.6 440 71.8
Lsat_1_v5_gn_3_52161 Lactuca sativa HOM05D003886 ORTHO05D004587 2.4e-161 572.8 425 70.8
Oeu061917.1 Olea europaea HOM05D003886 ORTHO05D004587 3.4e-160 568.9 516 58.7
unitig_699.g19834 Utricularia gibba HOM05D003886 ORTHO05D004587 1.0e-159 567.4 438 68.3
Zm00001eb308950 Zea mays HOM05D003886 ORTHO05D004587 5.1e-156 555.1 460 65.4
ATR0626G209 Amborella trichopoda HOM05D003886 ORTHO05D004587 1.1e-155 553.9 445 65.2
Lj5C312G11 Lonicera japonica HOM05D003886 ORTHO05D004587 3.1e-153 545.8 441 65.1
CDE02G1355 Ceratophyllum demersum HOM05D003886 ORTHO05D004587 5.0e-151 538.5 427 63.5
Aqoxy6G00358 Aquilegia oxysepala HOM05D003886 ORTHO05D004587 7.9e-149 531.2 454 61.9
Os08g0338900 Oryza sativa ssp. japonica HOM05D003886 ORTHO05D004587 3.7e-146 522.3 447 62.4
CDE03G0037 Ceratophyllum demersum HOM05D003886 ORTHO05D004587 6.3e-146 521.5 431 65.4
ECA246G0124 Erigeron canadensis HOM05D003886 ORTHO05D004587 9.4e-142 507.7 404 66.8
SHI31130 Sapria himalayana HOM05D003886 ORTHO05D004587 6.1e-141 505.0 458 61.1
SGA_v2.0_scaffold8G04472 Striga asiatica HOM05D003886 ORTHO05D004587 6.9e-137 491.5 517 55.3
Ciclev10021199m.g Citrus clementina HOM05D003886 ORTHO05D004587 2.7e-133 479.6 322 76.4
CDE05G0598 Ceratophyllum demersum HOM05D003886 ORTHO05D004587 1.8e-132 476.9 430 56.7
arahy.Tifrunner.gnm1.ann1.78GTJP Arachis hypogaea HOM05D003886 ORTHO05D004587 1.4e-129 467.2 289 82.0
CDE06G2124 Ceratophyllum demersum HOM05D003886 ORTHO05D004587 2.0e-128 463.4 390 63.6
BolC2t09627H Brassica oleracea HOM05D003886 ORTHO05D004587 1.9e-126 456.8 341 69.5
Mapoly0014s0003 Marchantia polymorpha HOM05D003886 ORTHO05D004587 1.2e-125 454.1 470 53.4
AagrBONN_evm.TU.Sc2ySwM_228.1694 Anthoceros agrestis HOM05D003886 ORTHO05D004587 4.4e-123 445.7 453 54.1
SMO367G1242 Selaginella moellendorffii HOM05D003886 ORTHO05D004587 2.9e-111 406.4 452 50.4
Pp3c23_7050 Physcomitrium patens HOM05D003886 ORTHO05D004587 1.3e-106 391.0 458 48.9
Nitab4.5_0000389g0130 Nicotiana tabacum HOM05D003886 ORTHO05D004587 2.8e-106 389.8 251 78.5
ECA228G0002 Erigeron canadensis HOM05D003886 ORTHO05D004587 1.1e-97 361.3 320 61.6
ATR0751G140 Amborella trichopoda HOM05D003886 ORTHO05D004587 6.2e-93 345.5 328 59.1
ClCG03G018020 Citrullus lanatus HOM05D003886 ORTHO05D004587 5.8e-91 339.0 290 62.8
Haze_16249 Corylus avellana HOM05D003886 ORTHO05D004587 7.8e-88 328.6 261 69.3
Pp3c16_8390 Physcomitrium patens HOM05D003886 ORTHO05D004587 1.5e-86 324.3 461 43.2
Cpa.g.sc10.20 Carica papaya HOM05D003886 ORTHO05D004587 2.1e-85 320.5 194 81.4
Nn8g38501 Nelumbo nucifera HOM05D003886 ORTHO05D004587 3.0e-79 300.1 189 77.2
CARHR072690 Cardamine hirsuta HOM05D003886 ORTHO05D004587 4.3e-78 296.2 193 74.6
CBR_g38268 Chara braunii HOM05D003886 ORTHO05D004587 1.1e-76 291.6 331 51.4
Ah.14g084510 Amaranthus hybridus HOM05D003886 ORTHO05D004587 4.4e-75 286.2 520 38.8
Os09g0284600 Oryza sativa ssp. japonica HOM05D003886 ORTHO05D004587 1.3e-74 284.6 216 66.7
PGSC0003DMG400013092 Solanum tuberosum HOM05D003886 ORTHO05D004587 2.1e-72 277.3 194 71.1
Cpa.g.sc10.19 Carica papaya HOM05D003886 ORTHO05D004587 3.0e-71 273.5 185 75.7
CAN.G1586.1 Capsicum annuum HOM05D003886 ORTHO05D004587 1.1e-68 265.0 236 60.6
HanXRQChr08g0234351 Helianthus annuus HOM05D003886 ORTHO05D004587 1.8e-60 237.7 153 79.1
Zm00001eb097400 Zea mays HOM05D003886 ORTHO05D004587 2.2e-58 230.7 214 57.0
ClCG03G018040 Citrullus lanatus HOM05D003886 ORTHO05D004587 9.3e-57 225.3 130 84.6
SEGI_11104 Sequoiadendron giganteum HOM05D003886 ORTHO05D004587 5.6e-54 216.1 292 45.9
SEGI_16863 Sequoiadendron giganteum HOM05D003886 ORTHO05D004587 1.1e-52 211.8 172 61.0
BcaB05g25167 Brassica carinata HOM05D003886 ORTHO05D004587 6.9e-52 209.1 120 85.0
ATR0751G177 Amborella trichopoda HOM05D003886 ORTHO05D004587 7.9e-48 195.7 135 67.4
Nitab4.5_0000389g0110 Nicotiana tabacum HOM05D003886 ORTHO05D004587 4.8e-45 186.4 169 54.4
MCO08G116 Micromonas commoda HOM05D003886 ORTHO05D004587 4.5e-43 179.9 399 32.6
Cre03.g196400 Chlamydomonas reinhardtii HOM05D003886 ORTHO05D004587 1.0e-39 168.7 299 37.1
PRCOL_00004606 Prasinoderma coloniale HOM05D003886 ORTHO05D004587 2.5e-38 164.1 293 35.5
Aqoxy6G02601 Aquilegia oxysepala HOM05D003886 ORTHO05D004587 3.4e-35 153.7 156 53.8
Haze_16250 Corylus avellana HOM05D003886 ORTHO05D004587 1.9e-33 147.9 79 87.3
MBI11_g15900_MAGBIO Magnolia biondii HOM05D003886 ORTHO05D004587 4.3e-30 136.7 76 86.8
arahy.Tifrunner.gnm1.ann1.RANL81 Arachis hypogaea HOM05D003886 ORTHO05D004587 5.7e-30 136.3 154 52.6
GSVIVG01024509001 Vitis vinifera HOM05D003886 ORTHO05D004587 7.7e-27 125.9 79 84.8
arahy.Tifrunner.gnm1.ann1.6KK5MR Arachis hypogaea HOM05D003886 ORTHO05D004587 1.3e-26 125.2 112 62.5
arahy.Tifrunner.gnm1.ann1.F9GSXH Arachis hypogaea HOM05D003886 ORTHO05D019782 6.7e-23 112.8 126 51.6
arahy.Tifrunner.gnm1.ann1.K7FQ1R Arachis hypogaea HOM05D003886 ORTHO05D019782 2.6e-22 110.9 113 58.4
BcaB05g25166 Brassica carinata HOM05D000912 ORTHO05D001232 3.7e-21 107.1 75 73.3
Lj5C312T17 Lonicera japonica HOM05D001538 ORTHO05D004587 1.7e-13 81.6 111 45.9
Gohir.A07G077000 Gossypium hirsutum HOM05D003886 ORTHO05D004587 7.0e-12 76.3 53 77.4
SHI49864 Sapria himalayana HOM05D003886 ORTHO05D004587 7.7e-11 72.8 51 70.6
arahy.Tifrunner.gnm1.ann1.EDPG13 Arachis hypogaea HOM05D003961 ORTHO05D038865 2.9e-10 70.9 113 40.7
CAN.G1600.1 Capsicum annuum HOM05D003886 ORTHO05D004587 3.8e-10 70.5 54 72.2
Dinv30975 Davidia involucrata HOM05D000190 ORTHO05D000113 6.5e-10 69.7 119 42.0
SHI26090 Sapria himalayana HOM05D005069 ORTHO05D006024 1.1e-09 68.9 63 57.1
ClCG03G018030 Citrullus lanatus HOM05D003886 ORTHO05D004587 1.9e-09 68.2 42 76.2
Lsat_1_v5_gn_7_81560 Lactuca sativa HOM05D000267 ORTHO05D029881 6.1e-08 63.2 76 51.3
SHI44505 Sapria himalayana HOM05D003886 ORTHO05D009901 2.0e-06 58.2 36 69.4
TWI38G0197 Tripterygium wilfordii HOM05D002054 ORTHO05D005362 3.4e-06 57.4 148 31.1
TWI63G1527 Tripterygium wilfordii HOM05D002054 ORTHO05D005362 7.5e-06 56.2 146 32.9


User provided reference genes

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