Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.01G088100 Carya illinoinensis HOM05D004074 ORTHO05D004717 1.3e-34 149.1 71 100.0
Duzib264G1024 Durio zibethinus HOM05D004074 ORTHO05D004717 2.8e-32 141.4 71 91.5
Gohir.D11G059000 Gossypium hirsutum HOM05D004074 ORTHO05D004717 6.1e-32 140.2 71 90.1
Gorai.007G063900 Gossypium raimondii HOM05D004074 ORTHO05D004717 6.1e-32 140.2 71 90.1
PGSC0003DMG402009187 Solanum tuberosum HOM05D004074 ORTHO05D004717 8.0e-32 139.8 71 88.7
Gohir.D12G001400 Gossypium hirsutum HOM05D004074 ORTHO05D004717 1.0e-31 139.4 71 88.7
Actinidia38792 Actinidia chinensis HOM05D004074 ORTHO05D004717 1.4e-31 139.0 71 90.1
Gohir.A11G055200 Gossypium hirsutum HOM05D004074 ORTHO05D004717 1.8e-31 138.7 71 88.7
Nitab4.5_0007548g0020 Nicotiana tabacum HOM05D004074 ORTHO05D004717 1.8e-31 138.7 71 90.1
Gorai.008G000800 Gossypium raimondii HOM05D004074 ORTHO05D004717 2.3e-31 138.3 71 87.3
PGSC0003DMG400028842 Solanum tuberosum HOM05D004074 ORTHO05D004717 2.3e-31 138.3 71 87.3
Actinidia00635 Actinidia chinensis HOM05D004074 ORTHO05D004717 5.2e-31 137.1 71 88.7
Actinidia25993 Actinidia chinensis HOM05D004074 ORTHO05D004717 5.2e-31 137.1 71 88.7
Gohir.A12G001600 Gossypium hirsutum HOM05D004074 ORTHO05D004717 5.2e-31 137.1 71 85.9
Sopen12g024230 Solanum pennellii HOM05D004074 ORTHO05D004717 5.2e-31 137.1 71 87.3
MD09G1158500 Malus domestica HOM05D004074 ORTHO05D004717 6.8e-31 136.7 69 88.4
Manes.05G195000 Manihot esculenta HOM05D004074 ORTHO05D004717 6.8e-31 136.7 69 89.9
PGR102G2231 Punica granatum HOM05D004074 ORTHO05D004717 6.8e-31 136.7 71 88.7
Cc01_g08930 Coffea canephora HOM05D004074 ORTHO05D004717 8.9e-31 136.3 71 88.7
Duzib147G0570 Durio zibethinus HOM05D004074 ORTHO05D004717 8.9e-31 136.3 71 87.3
Duzib187G1118 Durio zibethinus HOM05D004074 ORTHO05D004717 8.9e-31 136.3 71 88.7
Solyc06g063220.3 Solanum lycopersicum HOM05D004074 ORTHO05D004717 8.9e-31 136.3 71 85.9
Sopen06g022670 Solanum pennellii HOM05D004074 ORTHO05D004717 8.9e-31 136.3 71 85.9
ClCG09G001480 Citrullus lanatus HOM05D004074 ORTHO05D004717 1.2e-30 136.0 69 88.4
Solyc12g055760.2 Solanum lycopersicum HOM05D004074 ORTHO05D004717 1.2e-30 136.0 71 85.9
Actinidia21867 Actinidia chinensis HOM05D004074 ORTHO05D004717 1.5e-30 135.6 71 85.9
HanXRQChr10g0311531 Helianthus annuus HOM05D004074 ORTHO05D004717 1.5e-30 135.6 71 87.3
FAN02G0872 Fragaria x ananassa HOM05D004074 ORTHO05D004717 2.6e-30 134.8 69 87.0
FAN05G0051 Fragaria x ananassa HOM05D004074 ORTHO05D004717 2.6e-30 134.8 69 87.0
FAN09G3199 Fragaria x ananassa HOM05D004074 ORTHO05D004717 2.6e-30 134.8 69 87.0
MELO3C024297.2 Cucumis melo HOM05D004074 ORTHO05D004717 3.4e-30 134.4 69 87.0
Nn5g30428 Nelumbo nucifera HOM05D004074 ORTHO05D004717 3.4e-30 134.4 70 87.1
Prupe.3G167500 Prunus persica HOM05D004074 ORTHO05D004717 5.8e-30 133.7 69 85.5
FvH4_6g37330 Fragaria vesca HOM05D004074 ORTHO05D004717 7.5e-30 133.3 69 85.5
Nn6g31693 Nelumbo nucifera HOM05D004074 ORTHO05D004717 1.3e-29 132.5 69 87.0
Nn8g40291 Nelumbo nucifera HOM05D004074 ORTHO05D004717 1.3e-29 132.5 69 87.0
TPR.G2285 Trifolium pratense HOM05D004074 ORTHO05D004717 1.3e-29 132.5 69 87.0
CARHR041810 Cardamine hirsuta HOM05D004074 ORTHO05D004717 1.7e-29 132.1 69 85.5
CsaV3_7G033840 Cucumis sativus L. HOM05D004074 ORTHO05D004717 1.7e-29 132.1 69 85.5
Actinidia31138 Actinidia chinensis HOM05D004074 ORTHO05D004717 2.2e-29 131.7 69 85.5
HanXRQChr12g0359921 Helianthus annuus HOM05D004074 ORTHO05D004717 2.2e-29 131.7 71 83.1
CSS0037999 Camellia sinensis var. sinensis HOM05D004074 ORTHO05D004717 6.4e-29 130.2 71 81.7
CSS0039874 Camellia sinensis var. sinensis HOM05D004074 ORTHO05D004717 6.4e-29 130.2 71 81.7
RcHm_v2.0_Chr2g0150171 Rosa chinensis HOM05D004074 ORTHO05D004717 6.4e-29 130.2 69 85.5
AL1G59560 Arabidopsis lyrata HOM05D004074 ORTHO05D004717 8.3e-29 129.8 69 82.6
AT1G51650 Arabidopsis thaliana HOM05D004074 ORTHO05D004717 8.3e-29 129.8 69 82.6
CDE02G0689 Ceratophyllum demersum HOM05D004074 ORTHO05D004717 8.3e-29 129.8 71 83.1
BcaB04g17185 Brassica carinata HOM05D004074 ORTHO05D004717 1.1e-28 129.4 68 85.3
Migut.I01175 Erythranthe guttata HOM05D004074 ORTHO05D004717 1.1e-28 129.4 69 84.1
Psat1g059640 Pisum sativum HOM05D004074 ORTHO05D004717 1.1e-28 129.4 69 82.6
Sp1g38290 Schrenkiella parvula HOM05D004074 ORTHO05D004717 1.1e-28 129.4 68 85.3
Sed0005809 Sechium edule HOM05D004074 ORTHO05D004717 1.4e-28 129.0 69 81.2
unitig_748.g7476 Utricularia gibba HOM05D004074 ORTHO05D004717 1.4e-28 129.0 69 82.6
A08p02600 Brassica napus HOM05D004074 ORTHO05D004717 1.9e-28 128.6 68 83.8
BraA08t32299Z Brassica rapa HOM05D004074 ORTHO05D004717 1.9e-28 128.6 68 83.8
CDE05G2863 Ceratophyllum demersum HOM05D004074 ORTHO05D004717 1.9e-28 128.6 71 81.7
Dinv20359 Davidia involucrata HOM05D004074 ORTHO05D004717 1.9e-28 128.6 69 82.6
ECA234G0987 Erigeron canadensis HOM05D004074 ORTHO05D004717 1.9e-28 128.6 71 83.1
PGSC0003DMG400026508 Solanum tuberosum HOM05D004074 ORTHO05D004717 1.9e-28 128.6 71 80.3
Hma1.2p1_0039F.1_g024790 Hydrangea macrophylla HOM05D004074 ORTHO05D004717 2.4e-28 128.3 69 85.5
TWI77G0047 Tripterygium wilfordii HOM05D004074 ORTHO05D004717 2.4e-28 128.3 69 81.2
A05p19470 Brassica napus HOM05D004074 ORTHO05D004717 3.2e-28 127.9 68 85.3
BraA05t20851Z Brassica rapa HOM05D004074 ORTHO05D004717 3.2e-28 127.9 68 85.3
Dinv37799 Davidia involucrata HOM05D004074 ORTHO05D004717 3.2e-28 127.9 67 85.1
Haze_03743 Corylus avellana HOM05D004074 ORTHO05D004717 4.1e-28 127.5 67 83.6
Phvul.008G255900 Phaseolus vulgaris HOM05D004074 ORTHO05D004717 4.1e-28 127.5 69 79.7
CARHR097100 Cardamine hirsuta HOM05D004074 ORTHO05D004717 5.4e-28 127.1 69 79.7
Thhalv10011901m.g Eutrema salsugineum HOM05D004074 ORTHO05D004717 5.4e-28 127.1 68 83.8
Medtr5g040610 Medicago truncatula HOM05D004074 ORTHO05D004717 7.0e-28 126.7 69 81.2
Sp3g19200 Schrenkiella parvula HOM05D004074 ORTHO05D004717 9.2e-28 126.3 69 79.7
CANSAT01G1956 Cannabis sativa HOM05D004074 ORTHO05D004717 1.2e-27 125.9 71 83.1
TWI53G1078 Tripterygium wilfordii HOM05D004074 ORTHO05D004717 1.2e-27 125.9 69 78.3
BcaB02g11264 Brassica carinata HOM05D004074 ORTHO05D004717 1.6e-27 125.6 68 83.8
Lsat_1_v5_gn_4_88780 Lactuca sativa HOM05D004074 ORTHO05D004717 2.0e-27 125.2 70 81.4
Psat7g263760 Pisum sativum HOM05D004074 ORTHO05D004717 2.0e-27 125.2 70 78.6
Glyma.07G003700 Glycine max HOM05D004074 ORTHO05D004717 2.7e-27 124.8 71 78.9
Nitab4.5_0002885g0120 Nicotiana tabacum HOM05D004074 ORTHO05D004717 2.7e-27 124.8 64 84.4
Nitab4.5_0008628g0040 Nicotiana tabacum HOM05D004074 ORTHO05D004717 2.7e-27 124.8 64 85.9
Peaxi162Scf00038g02442 Petunia axillaris HOM05D004074 ORTHO05D004717 2.7e-27 124.8 62 88.7
Thecc.01G124200 Theobroma cacao HOM05D004074 ORTHO05D004717 2.7e-27 124.8 61 91.8
Ciclev10026787m.g Citrus clementina HOM05D004074 ORTHO05D004717 3.5e-27 124.4 62 88.7
COL.COLO4_13992 Corchorus olitorius HOM05D004074 ORTHO05D004717 3.5e-27 124.4 62 88.7
vmacro18761 Vaccinium macrocarpon HOM05D004074 ORTHO05D004717 3.5e-27 124.4 63 87.3
Aqoxy7G03184 Aquilegia oxysepala HOM05D004074 ORTHO05D004717 4.6e-27 124.0 70 82.9
BcaC08g43926 Brassica carinata HOM05D004074 ORTHO05D004717 4.6e-27 124.0 68 83.8
C06p13180 Brassica napus HOM05D004074 ORTHO05D004717 4.6e-27 124.0 68 83.8
BolC6t36474H Brassica oleracea HOM05D004074 ORTHO05D004717 4.6e-27 124.0 68 83.8
BraA01t03480Z Brassica rapa HOM05D004074 ORTHO05D004717 4.6e-27 124.0 69 78.3
Hund14448 Selenicereus undatus HOM05D004074 ORTHO05D004717 4.6e-27 124.0 69 78.3
BcaB04g19151 Brassica carinata HOM05D004074 ORTHO05D004717 6.0e-27 123.6 69 76.8
BcaC01g03518 Brassica carinata HOM05D004074 ORTHO05D004717 6.0e-27 123.6 69 76.8
BolC1t04251H Brassica oleracea HOM05D004074 ORTHO05D004717 6.0e-27 123.6 69 78.3
Potri.010G250000 Populus trichocarpa HOM05D004074 ORTHO05D004717 6.0e-27 123.6 67 82.1
CAN.G1073.1 Capsicum annuum HOM05D004074 ORTHO05D004717 7.8e-27 123.2 62 87.1
Lj3g0011227 Lotus japonicus HOM05D004074 ORTHO05D004717 7.8e-27 123.2 61 88.5
Nitab4.5_0001691g0090 Nicotiana tabacum HOM05D004074 ORTHO05D004717 7.8e-27 123.2 61 88.5
Nitab4.5_0002661g0050 Nicotiana tabacum HOM05D004074 ORTHO05D004717 7.8e-27 123.2 61 90.2
Potri.008G008900 Populus trichocarpa HOM05D004074 ORTHO05D004717 7.8e-27 123.2 67 82.1
Aa31LG10G3130 Aethionema arabicum HOM05D004074 ORTHO05D004717 1.3e-26 122.5 69 81.2
BcaB04g20604 Brassica carinata HOM05D004074 ORTHO05D004717 1.3e-26 122.5 69 76.8
BcaNung05296 Brassica carinata HOM05D004074 ORTHO05D004717 1.3e-26 122.5 69 76.8
A01p33680 Brassica napus HOM05D004074 ORTHO05D004717 1.3e-26 122.5 69 76.8
C01p43050 Brassica napus HOM05D004074 ORTHO05D004717 1.3e-26 122.5 69 76.8
unitig_32.g11555 Utricularia gibba HOM05D004074 ORTHO05D004717 1.3e-26 122.5 69 76.8
Nitab4.5_0000357g0290 Nicotiana tabacum HOM05D004074 ORTHO05D004717 1.7e-26 122.1 61 88.5
Carub.0001s4049 Capsella rubella HOM05D004074 ORTHO05D004717 2.3e-26 121.7 68 79.4
FAN14G4331 Fragaria x ananassa HOM05D004074 ORTHO05D004717 3.0e-26 121.3 61 88.5
Hund11291 Selenicereus undatus HOM05D004074 ORTHO05D004717 3.9e-26 120.9 67 80.6
Cpa.g.sc1009.1 Carica papaya HOM05D004074 ORTHO05D004717 5.0e-26 120.6 61 88.5
Glyma.08G222900 Glycine max HOM05D004074 ORTHO05D004717 8.6e-26 119.8 78 73.1
CAN.G790.25 Capsicum annuum HOM05D004074 ORTHO05D004717 1.1e-25 119.4 62 83.9
Rhsim06G0076700 Rhododendron simsii HOM05D004074 ORTHO05D004717 1.1e-25 119.4 63 84.1
Rhsim08G0247900 Rhododendron simsii HOM05D004074 ORTHO05D004717 1.1e-25 119.4 61 86.9
THA.LOC104821596 Tarenaya hassleriana HOM05D004074 ORTHO05D004717 1.1e-25 119.4 69 75.4
Oeu040350.2 Olea europaea HOM05D004074 ORTHO05D004717 3.3e-25 117.9 61 85.2
PSO170G4934 Papaver somniferum HOM05D004074 ORTHO05D004717 3.3e-25 117.9 68 79.4
PSO339G3796 Papaver somniferum HOM05D004074 ORTHO05D004717 3.3e-25 117.9 68 79.4
VMungo0647G0339 Vigna mungo HOM05D001270 ORTHO05D001099 3.3e-25 117.9 62 85.5
QL05p083316 Quercus lobata HOM05D004074 ORTHO05D004717 5.6e-25 117.1 64 81.2
Thhalv10021996m.g Eutrema salsugineum HOM05D004074 ORTHO05D004717 1.2e-24 115.9 61 82.0
Aa31LG8G7900 Aethionema arabicum HOM05D004074 ORTHO05D004717 1.6e-24 115.5 65 80.0
BolC3t17439H Brassica oleracea HOM05D000606 ORTHO05D001265 1.6e-24 115.5 67 76.1
BraA03t13364Z Brassica rapa HOM05D000606 ORTHO05D001265 1.6e-24 115.5 67 76.1
Lalb_Chr25g0278611 Lupinus albus HOM05D004074 ORTHO05D004717 1.6e-24 115.5 67 73.1
Sabra10G0194600 Salix brachista HOM05D004074 ORTHO05D004717 1.6e-24 115.5 61 85.2
Aqoxy5G02869 Aquilegia oxysepala HOM05D004074 ORTHO05D004717 2.1e-24 115.2 63 82.5
Sabra08G0005100 Salix brachista HOM05D004074 ORTHO05D004717 3.6e-24 114.4 63 82.5
BolC8t49078H Brassica oleracea HOM05D004074 ORTHO05D004717 4.7e-24 114.0 68 75.0
Eucgr.F04009 Eucalyptus grandis HOM05D004074 ORTHO05D004717 4.7e-24 114.0 68 76.5
SGA_v2.0_scaffold122G33290 Striga asiatica HOM05D004074 ORTHO05D004717 4.7e-24 114.0 60 83.3
Zm00001eb161770 Zea mays HOM05D004074 ORTHO05D004717 4.7e-24 114.0 68 73.5
Zm00001eb357940 Zea mays HOM05D004074 ORTHO05D004717 1.1e-23 112.8 68 72.1
TAR626G1506 Trochodendron aralioides HOM05D004074 ORTHO05D004717 2.3e-23 111.7 59 83.1
arahy.Tifrunner.gnm1.ann1.9ZAP4M Arachis hypogaea HOM05D004074 ORTHO05D004717 4.0e-23 110.9 61 77.0
MBI04_g18036_MAGBIO Magnolia biondii HOM05D004074 ORTHO05D004717 5.2e-23 110.5 60 78.3
TAR383G0992 Trochodendron aralioides HOM05D004074 ORTHO05D004717 5.2e-23 110.5 59 81.4
SHI21232 Sapria himalayana HOM05D004074 ORTHO05D004717 6.8e-23 110.2 69 73.9
DCAR_007668 Daucus carota HOM05D004074 ORTHO05D004717 8.9e-23 109.8 64 71.9
Ah.07g199420 Amaranthus hybridus HOM05D004074 ORTHO05D004717 1.2e-22 109.4 59 81.4
ATR0580G305 Amborella trichopoda HOM05D004074 ORTHO05D004717 1.2e-22 109.4 64 73.4
QL05p083267 Quercus lobata HOM05D004074 ORTHO05D004717 1.2e-22 109.4 62 74.2
BcaC09g49057 Brassica carinata HOM05D004074 ORTHO05D004717 1.5e-22 109.0 61 77.0
EL10Ac5g12205 Beta vulgaris HOM05D004074 ORTHO05D004717 3.4e-22 107.8 61 77.0
Os08g0250200 Oryza sativa ssp. japonica HOM05D004074 ORTHO05D004717 3.4e-22 107.8 65 70.8
HPP92_021730 Vanilla planifolia HOM05D004074 ORTHO05D004717 4.4e-22 107.5 60 76.7
BcaC03g13642 Brassica carinata HOM05D000239 ORTHO05D004717 5.8e-22 107.1 66 71.2
C02p10320 Brassica napus HOM05D004074 ORTHO05D004717 7.5e-22 106.7 65 72.3
BcaC08g44915 Brassica carinata HOM05D004074 ORTHO05D004717 2.9e-21 104.8 69 71.0
SEGI_28642 Sequoiadendron giganteum HOM05D004074 ORTHO05D004717 4.9e-21 104.0 70 62.9
SGA_v2.0_scaffold71G24013 Striga asiatica HOM05D001270 ORTHO05D001099 4.9e-21 104.0 60 73.3
C06p25410 Brassica napus HOM05D004074 ORTHO05D004717 1.4e-20 102.4 62 74.2
BolC6t37702H Brassica oleracea HOM05D004074 ORTHO05D004717 1.4e-20 102.4 62 74.2
AUR62018789 Chenopodium quinoa HOM05D004074 ORTHO05D004717 2.4e-20 101.7 61 73.8
GSVIVG01037184001 Vitis vinifera HOM05D004074 ORTHO05D004717 2.1e-19 98.6 63 68.3
AagrBONN_evm.TU.Sc2ySwM_117.3571 Anthoceros agrestis HOM05D004074 ORTHO05D004717 1.5e-17 92.4 65 55.4
MBI14_g24286_MAGBIO Magnolia biondii HOM05D004074 ORTHO05D004717 3.3e-17 91.3 47 80.9
HPP92_021648 Vanilla planifolia HOM05D004074 ORTHO05D004717 5.6e-17 90.5 68 61.8
GSVIVG01037963001 Vitis vinifera HOM05D004074 ORTHO05D004717 5.6e-17 90.5 45 86.7
AagrBONN_evm.TU.Sc2ySwM_344.1495 Anthoceros agrestis HOM05D004074 ORTHO05D004717 7.3e-17 90.1 65 53.8
SalBow6G5392 Salvia bowleyana HOM05D004074 ORTHO05D004717 9.5e-17 89.7 48 79.2
Mapoly0001s0230 Marchantia polymorpha HOM05D004074 ORTHO05D004717 2.1e-16 88.6 69 56.5
Thhalv10022333m.g Eutrema salsugineum HOM05D004074 ORTHO05D004717 2.8e-16 88.2 67 61.2
Lsat_1_v5_gn_5_137500 Lactuca sativa HOM05D001270 ORTHO05D001099 2.8e-16 88.2 57 70.2
Pp3c1_12120 Physcomitrium patens HOM05D004074 ORTHO05D004717 1.5e-14 82.4 62 53.2
Pp3c2_24870 Physcomitrium patens HOM05D004074 ORTHO05D004717 1.5e-14 82.4 62 53.2
C02p45000 Brassica napus HOM05D000128 ORTHO05D000059 3.4e-14 81.3 45 77.8
SMO351G0623 Selaginella moellendorffii HOM05D004074 ORTHO05D004717 1.7e-13 79.0 57 54.4
MCO11G253 Micromonas commoda HOM05D004074 ORTHO05D004717 2.9e-13 78.2 69 49.3
Medtr4g005960 Medicago truncatula HOM05D004074 ORTHO05D004717 1.6e-11 72.4 62 51.6
PSO455G0136 Papaver somniferum HOM05D004074 ORTHO05D004717 3.5e-11 71.2 60 60.0
Zm00001eb394860 Zea mays HOM05D004074 ORTHO05D004717 6.0e-11 70.5 53 56.6
PRCOL_00000946 Prasinoderma coloniale HOM05D004074 ORTHO05D004717 7.8e-11 70.1 55 52.7
Pp3c1_10140 Physcomitrium patens HOM05D004074 ORTHO05D004717 1.3e-10 69.3 59 50.8
Cre10.g420700 Chlamydomonas reinhardtii HOM05D004074 ORTHO05D004717 4.7e-08 60.8 62 41.9
QL05p083294 Quercus lobata HOM05D004074 ORTHO05D004717 4.0e-07 57.8 53 56.6


User provided reference genes

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