Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.01G082500 Carya illinoinensis HOM05D002391 ORTHO05D004870 0.0e+00 1441.4 747 100.0
Cfa003734 Carpinus fangiana HOM05D002391 ORTHO05D004870 0.0e+00 1310.8 744 90.7
Haze_15735 Corylus avellana HOM05D002391 ORTHO05D004870 0.0e+00 1309.3 744 90.6
QL08p047248 Quercus lobata HOM05D002391 ORTHO05D004870 0.0e+00 1277.3 745 88.6
Manes.01G239800 Manihot esculenta HOM05D002391 ORTHO05D004870 0.0e+00 1242.6 740 86.2
ClCG06G002280 Citrullus lanatus HOM05D002391 ORTHO05D004870 0.0e+00 1231.9 749 85.0
CANSAT56G4423 Cannabis sativa HOM05D002391 ORTHO05D004870 0.0e+00 1229.5 731 85.9
Sed0000252 Sechium edule HOM05D002391 ORTHO05D004870 0.0e+00 1228.4 749 84.8
CsaV3_6G008330 Cucumis sativus L. HOM05D002391 ORTHO05D004870 0.0e+00 1228.0 749 84.9
Potri.002G179600 Populus trichocarpa HOM05D002391 ORTHO05D004870 0.0e+00 1228.0 741 85.2
MELO3C022305.2 Cucumis melo HOM05D002391 ORTHO05D004870 0.0e+00 1226.5 731 86.0
Sabra02G0134300 Salix brachista HOM05D002391 ORTHO05D004870 0.0e+00 1225.3 745 84.4
arahy.Tifrunner.gnm1.ann1.SI3K9E Arachis hypogaea HOM05D002391 ORTHO05D004870 0.0e+00 1221.1 756 82.8
CANSAT56G4076 Cannabis sativa HOM05D002391 ORTHO05D004870 0.0e+00 1220.7 727 85.0
arahy.Tifrunner.gnm1.ann1.E8X9SV Arachis hypogaea HOM05D002391 ORTHO05D004870 0.0e+00 1219.9 756 82.8
COL.COLO4_31148 Corchorus olitorius HOM05D002391 ORTHO05D004870 0.0e+00 1217.2 745 83.2
TWI59G0940 Tripterygium wilfordii HOM05D002391 ORTHO05D004870 0.0e+00 1217.2 745 83.6
Duzib235G0384 Durio zibethinus HOM05D002391 ORTHO05D004870 0.0e+00 1214.9 732 83.7
Gorai.005G122300 Gossypium raimondii HOM05D002391 ORTHO05D004870 0.0e+00 1205.7 732 83.7
TAR629G2316 Trochodendron aralioides HOM05D002391 ORTHO05D004870 0.0e+00 1204.9 747 83.1
Lalb_Chr18g0044711 Lupinus albus HOM05D002391 ORTHO05D004870 0.0e+00 1203.7 745 82.3
Atru.chr5.768 Acer truncatum HOM05D002391 ORTHO05D004870 0.0e+00 1203.0 740 83.0
FAN03G0415 Fragaria x ananassa HOM05D002391 ORTHO05D004870 0.0e+00 1201.8 735 82.4
Ciclev10018998m.g Citrus clementina HOM05D002391 ORTHO05D004870 0.0e+00 1199.5 745 82.7
Glyma.03G261100 Glycine max HOM05D002391 ORTHO05D004870 0.0e+00 1199.5 744 82.5
TWI14G1409 Tripterygium wilfordii HOM05D002391 ORTHO05D004870 0.0e+00 1198.7 741 83.0
FAN01G3049 Fragaria x ananassa HOM05D002391 ORTHO05D004870 0.0e+00 1198.3 735 82.2
Gohir.A02G090600 Gossypium hirsutum HOM05D002391 ORTHO05D004870 0.0e+00 1198.3 746 82.2
Prupe.2G197800 Prunus persica HOM05D002391 ORTHO05D004870 0.0e+00 1198.3 731 83.0
FAN06G0341 Fragaria x ananassa HOM05D002391 ORTHO05D004870 0.0e+00 1197.6 735 82.2
FAN10G1672 Fragaria x ananassa HOM05D002391 ORTHO05D004870 0.0e+00 1196.4 735 82.3
FAN06G0379 Fragaria x ananassa HOM05D002391 ORTHO05D004870 0.0e+00 1195.6 735 82.0
FAN10G4291 Fragaria x ananassa HOM05D002391 ORTHO05D004870 0.0e+00 1195.6 735 82.2
FvH4_7g17670 Fragaria vesca HOM05D002391 ORTHO05D004870 0.0e+00 1194.1 742 81.4
TPR.G4730 Trifolium pratense HOM05D002391 ORTHO05D004870 0.0e+00 1192.9 755 81.5
Actinidia08007 Actinidia chinensis HOM05D002391 ORTHO05D004870 0.0e+00 1192.6 744 82.0
Gorai.010G141700 Gossypium raimondii HOM05D002391 ORTHO05D004870 0.0e+00 1191.8 729 82.7
Lj5g0026855 Lotus japonicus HOM05D002391 ORTHO05D004870 0.0e+00 1191.8 740 82.4
Phvul.009G254600 Phaseolus vulgaris HOM05D002391 ORTHO05D004870 0.0e+00 1190.6 748 81.6
Gohir.D06G121400 Gossypium hirsutum HOM05D002391 ORTHO05D004870 0.0e+00 1190.3 729 82.6
Ca_09546_v3 Cicer arietinum L. HOM05D002391 ORTHO05D004870 0.0e+00 1188.3 754 81.2
Prupe.2G092100 Prunus persica HOM05D002391 ORTHO05D004870 0.0e+00 1186.8 730 82.6
VMungo1309G1994 Vigna mungo HOM05D002391 ORTHO05D004870 0.0e+00 1186.4 748 80.9
Glyma.19G260100 Glycine max HOM05D002391 ORTHO05D004870 0.0e+00 1186.0 744 81.6
A03p31630 Brassica napus HOM05D002391 ORTHO05D004870 0.0e+00 1184.5 741 80.0
Psat0s3525g0040 Pisum sativum HOM05D002391 ORTHO05D004870 0.0e+00 1184.1 732 82.8
BraA03t12339Z Brassica rapa HOM05D002391 ORTHO05D004870 0.0e+00 1183.3 741 79.9
Hma1.2p1_0074F.1_g038740 Hydrangea macrophylla HOM05D002391 ORTHO05D004870 0.0e+00 1182.9 743 81.3
Sp6g01350 Schrenkiella parvula HOM05D002391 ORTHO05D004870 0.0e+00 1182.9 741 79.9
Medtr7g118220 Medicago truncatula HOM05D002391 ORTHO05D004870 0.0e+00 1181.8 752 80.9
Thhalv10028369m.g Eutrema salsugineum HOM05D002391 ORTHO05D004870 0.0e+00 1181.0 741 79.4
Thecc.06G056400 Theobroma cacao HOM05D002391 ORTHO05D004870 0.0e+00 1180.6 732 82.5
C03p38630 Brassica napus HOM05D002391 ORTHO05D004870 0.0e+00 1179.9 741 79.6
BolC3t16136H Brassica oleracea HOM05D002391 ORTHO05D004870 0.0e+00 1179.9 741 79.6
Phvul.009G257900 Phaseolus vulgaris HOM05D002391 ORTHO05D004870 0.0e+00 1177.9 748 80.6
Aa31LG5G1170 Aethionema arabicum HOM05D002391 ORTHO05D004870 0.0e+00 1177.5 746 78.6
Nn2g14439 Nelumbo nucifera HOM05D002391 ORTHO05D004870 0.0e+00 1177.5 745 80.1
VMungo1309G0406 Vigna mungo HOM05D002391 ORTHO05D004870 0.0e+00 1177.5 747 80.6
vmacro13188 Vaccinium macrocarpon HOM05D002391 ORTHO05D004870 0.0e+00 1174.5 748 81.3
CARHR250280 Cardamine hirsuta HOM05D002391 ORTHO05D004870 0.0e+00 1173.7 740 79.2
Aqoxy5G01515 Aquilegia oxysepala HOM05D002391 ORTHO05D004870 0.0e+00 1173.3 728 82.4
Dinv31611 Davidia involucrata HOM05D002391 ORTHO05D004870 0.0e+00 1171.4 746 81.1
Eucgr.B02196 Eucalyptus grandis HOM05D002391 ORTHO05D004870 0.0e+00 1171.0 731 82.4
PGR031G3302 Punica granatum HOM05D002391 ORTHO05D004870 0.0e+00 1170.6 749 81.2
AL6G52005 Arabidopsis lyrata HOM05D002391 ORTHO05D004870 0.0e+00 1169.8 741 78.8
Lsat_1_v5_gn_4_41841 Lactuca sativa HOM05D002391 ORTHO05D004870 0.0e+00 1166.4 745 80.0
Carub.0006s3580 Capsella rubella HOM05D002391 ORTHO05D004870 0.0e+00 1164.4 741 78.3
AT4G01395 Arabidopsis thaliana HOM05D002391 ORTHO05D004870 0.0e+00 1161.4 741 78.4
THA.LOC104815894 Tarenaya hassleriana HOM05D002391 ORTHO05D004870 0.0e+00 1160.2 741 77.9
Dinv32645 Davidia involucrata HOM05D002391 ORTHO05D004870 0.0e+00 1152.9 725 81.9
Lsat_1_v5_gn_3_17681 Lactuca sativa HOM05D002391 ORTHO05D004870 0.0e+00 1150.2 745 78.9
MD07G1159900 Malus domestica HOM05D002391 ORTHO05D004870 0.0e+00 1149.8 735 80.7
Migut.B01922 Erythranthe guttata HOM05D002391 ORTHO05D004870 0.0e+00 1147.1 735 80.3
Peaxi162Scf00028g00124 Petunia axillaris HOM05D002391 ORTHO05D004870 0.0e+00 1145.6 743 79.7
BcaC01g06822 Brassica carinata HOM05D002391 ORTHO05D004870 0.0e+00 1144.8 716 79.6
Gohir.D02G107800 Gossypium hirsutum HOM05D002391 ORTHO05D004870 0.0e+00 1137.9 732 79.8
Sopen07g029360 Solanum pennellii HOM05D002391 ORTHO05D004870 0.0e+00 1137.1 735 79.6
PGSC0003DMG401031089 Solanum tuberosum HOM05D002391 ORTHO05D004870 0.0e+00 1135.2 731 79.8
Solyc07g056010.3 Solanum lycopersicum HOM05D002391 ORTHO05D004870 0.0e+00 1134.8 735 79.5
HanXRQChr16g0520851 Helianthus annuus HOM05D002391 ORTHO05D004870 0.0e+00 1134.4 732 79.0
MSTRG.17383 Avicennia marina HOM05D002391 ORTHO05D004870 0.0e+00 1132.1 734 78.9
CAN.G1209.27 Capsicum annuum HOM05D002391 ORTHO05D004870 0.0e+00 1130.5 735 78.8
SGA_v2.0_scaffold12G06269 Striga asiatica HOM05D002391 ORTHO05D004870 0.0e+00 1130.2 743 77.9
CAN.G585.49 Capsicum annuum HOM05D002391 ORTHO05D004870 0.0e+00 1128.2 745 78.0
Hund24710 Selenicereus undatus HOM05D002391 ORTHO05D004870 0.0e+00 1126.7 733 78.2
DCAR_032252 Daucus carota HOM05D002391 ORTHO05D004870 0.0e+00 1125.2 753 77.8
Nitab4.5_0003682g0020 Nicotiana tabacum HOM05D002391 ORTHO05D004870 0.0e+00 1115.5 722 79.1
SalBow3G2598 Salvia bowleyana HOM05D002391 ORTHO05D004870 0.0e+00 1114.8 768 75.9
SalBow3G4592 Salvia bowleyana HOM05D002391 ORTHO05D004870 0.0e+00 1114.8 768 75.9
PSO170G3053 Papaver somniferum HOM05D002391 ORTHO05D004870 0.0e+00 1112.1 746 76.1
PSO017G7365 Papaver somniferum HOM05D002391 ORTHO05D004870 0.0e+00 1110.5 731 77.0
PSO339G3919 Papaver somniferum HOM05D002391 ORTHO05D004870 0.0e+00 1104.7 748 75.4
MBI12_g09288_MAGBIO Magnolia biondii HOM05D002391 ORTHO05D004870 0.0e+00 1101.3 733 77.8
Ah.08g211620 Amaranthus hybridus HOM05D002391 ORTHO05D004870 0.0e+00 1097.8 736 75.5
CDE11G0036 Ceratophyllum demersum HOM05D002391 ORTHO05D004870 0.0e+00 1092.0 731 74.6
Lalb_Chr15g0076531 Lupinus albus HOM05D002391 ORTHO05D004870 0.0e+00 1079.3 741 74.1
Lj9A607T84 Lonicera japonica HOM05D002391 ORTHO05D004870 0.0e+00 1077.4 691 80.2
Sc20g0005510 Simmondsia chinensis HOM05D002391 ORTHO05D004870 0.0e+00 1075.1 747 73.1
ATR0697G195 Amborella trichopoda HOM05D002391 ORTHO05D004870 2.5e-309 1065.1 731 73.3
HPP92_001559 Vanilla planifolia HOM05D002391 ORTHO05D004870 3.4e-306 1054.7 741 71.5
SEGI_26155 Sequoiadendron giganteum HOM05D002391 ORTHO05D004870 9.9e-306 1053.1 751 69.8
ECA234G3070 Erigeron canadensis HOM05D002391 ORTHO05D004870 8.3e-305 1050.0 725 73.4
SEGI_23282 Sequoiadendron giganteum HOM05D002391 ORTHO05D004870 3.5e-303 1044.6 756 68.9
GSVIVG01027440001 Vitis vinifera HOM05D002391 ORTHO05D004870 1.2e-300 1036.2 728 74.5
Nitab4.5_0003729g0040 Nicotiana tabacum HOM05D002391 ORTHO05D004870 8.1e-300 1033.5 722 75.2
EL10Ac7g16621 Beta vulgaris HOM05D002391 ORTHO05D004870 7.1e-296 1020.4 756 70.4
Cc06_g20470 Coffea canephora HOM05D002391 ORTHO05D004870 1.1e-288 996.5 748 70.2
ECA234G2472 Erigeron canadensis HOM05D002391 ORTHO05D004870 3.5e-287 991.5 728 69.1
AUR62042494 Chenopodium quinoa HOM05D002391 ORTHO05D004870 4.6e-287 991.1 666 75.2
unitig_899.g15596 Utricularia gibba HOM05D002391 ORTHO05D004870 6.6e-286 987.3 709 71.9
AUR62040015 Chenopodium quinoa HOM05D002391 ORTHO05D004870 2.9e-281 971.8 664 73.8
Oeu007915.2 Olea europaea HOM05D002391 ORTHO05D004870 6.0e-271 937.6 743 67.8
Mapoly0151s0016 Marchantia polymorpha HOM05D002391 ORTHO05D004870 2.1e-255 885.9 731 60.9
Pp3c17_20140 Physcomitrium patens HOM05D002391 ORTHO05D004870 6.1e-255 884.4 754 59.8
BcaB05g23972 Brassica carinata HOM05D002391 ORTHO05D004870 2.9e-249 865.5 740 63.6
Gohir.A06G116700 Gossypium hirsutum HOM05D002391 ORTHO05D004870 1.6e-247 859.8 561 78.1
Manes.05G016350 Manihot esculenta HOM05D002391 ORTHO05D004870 3.6e-247 858.6 731 67.2
SMO364G0412 Selaginella moellendorffii HOM05D002391 ORTHO05D004870 3.0e-246 855.5 732 59.4
MD07G1159800 Malus domestica HOM05D002391 ORTHO05D004870 1.4e-235 820.1 523 79.9
unitig_21.g20038 Utricularia gibba HOM05D002391 ORTHO05D004870 1.3e-233 813.5 645 65.6
RcHm_v2.0_Chr1g0334511 Rosa chinensis HOM05D002391 ORTHO05D004870 1.0e-214 750.7 434 88.9
Rhsim07G0007000 Rhododendron simsii HOM05D002391 ORTHO05D004870 3.0e-214 749.2 552 71.6
CBR_g6290 Chara braunii HOM05D002391 ORTHO05D004870 6.3e-212 741.5 867 46.6
TAR636G0053 Trochodendron aralioides HOM05D002391 ORTHO05D004870 1.1e-192 677.6 386 90.4
PSO302G0149 Papaver somniferum HOM05D002391 ORTHO05D004870 1.7e-180 637.1 413 78.0
MD07G1159700 Malus domestica HOM05D002391 ORTHO05D004870 3.2e-171 606.3 330 93.6
A03p50140 Brassica napus HOM05D002391 ORTHO05D004870 1.1e-168 597.8 395 76.2
Os02g0456000 Oryza sativa ssp. japonica HOM05D002391 ORTHO05D004870 5.3e-166 589.0 533 58.5
AagrBONN_evm.TU.Sc2ySwM_344.5215 Anthoceros agrestis HOM05D002391 ORTHO05D004870 4.6e-162 575.9 534 55.2
Carub.0003s2971 Capsella rubella HOM05D002391 ORTHO05D004870 9.6e-160 568.2 651 50.1
Zm00001eb402340 Zea mays HOM05D002391 ORTHO05D004870 5.3e-158 562.4 530 57.4
CDE02G1610 Ceratophyllum demersum HOM05D002391 ORTHO05D004870 2.5e-155 553.5 731 45.7
Zm00001eb005370 Zea mays HOM05D002391 ORTHO05D004870 6.0e-146 522.3 496 56.7
CAN.G732.5 Capsicum annuum HOM05D002391 ORTHO05D004870 2.3e-145 520.4 359 74.4
vmacro23330 Vaccinium macrocarpon HOM05D002391 ORTHO05D004870 1.8e-137 494.2 328 79.3
PRCOL_00002903 Prasinoderma coloniale HOM05D002391 ORTHO05D004870 7.2e-131 472.2 777 36.9
TAR636G3264 Trochodendron aralioides HOM05D002391 ORTHO05D004870 5.7e-128 462.6 324 73.1
Cre06.g287250 Chlamydomonas reinhardtii HOM05D002391 ORTHO05D004870 9.1e-126 455.3 834 33.5
vmacro13197 Vaccinium macrocarpon HOM05D002391 ORTHO05D004870 1.6e-117 427.9 498 52.2
BraA03t14107Z Brassica rapa HOM05D002391 ORTHO05D004870 7.7e-117 425.6 276 78.3
A05p28430 Brassica napus HOM05D002391 ORTHO05D004870 7.2e-115 419.1 272 79.0
BraA05t21723Z Brassica rapa HOM05D002391 ORTHO05D004870 2.7e-114 417.2 272 78.7
DCAR_022118 Daucus carota HOM05D002391 ORTHO05D004870 1.2e-112 411.8 331 67.1
RcHm_v2.0_Chr1g0334501 Rosa chinensis HOM05D002391 ORTHO05D004870 1.7e-111 407.9 275 73.8
Cpa.g.sc193.14 Carica papaya HOM05D002391 ORTHO05D004870 1.5e-107 394.8 210 93.3
A08p28600 Brassica napus HOM05D002391 ORTHO05D004870 2.2e-103 380.9 266 74.4
BraA02t04916Z Brassica rapa HOM05D002391 ORTHO05D004870 1.2e-101 375.2 232 81.5
BraA02t08770Z Brassica rapa HOM05D002391 ORTHO05D004870 1.2e-101 375.2 232 81.5
MBI12_g48127_MAGBIO Magnolia biondii HOM05D002391 ORTHO05D004870 2.8e-98 364.0 402 54.2
A07p33310 Brassica napus HOM05D002391 ORTHO05D004870 4.1e-94 350.1 211 83.9
PGSC0003DMG402031089 Solanum tuberosum HOM05D002391 ORTHO05D004870 1.8e-89 334.7 183 90.7
CAN.G732.6 Capsicum annuum HOM05D002391 ORTHO05D004870 8.9e-89 332.4 190 87.4
Dinv08357 Davidia involucrata HOM05D002391 ORTHO05D004870 6.6e-52 209.9 187 61.0
HanXRQChr05g0132281 Helianthus annuus HOM05D002391 ORTHO05D004870 1.1e-51 209.1 123 83.7
FvH4_4g00571 Fragaria vesca HOM05D002391 ORTHO05D004870 1.9e-51 208.4 149 69.8
FvH4_5g29942 Fragaria vesca HOM05D002391 ORTHO05D017667 4.8e-50 203.8 220 51.8
C02p38430 Brassica napus HOM05D002391 ORTHO05D017667 4.5e-48 197.2 164 60.4
Actinidia33035 Actinidia chinensis HOM05D002391 ORTHO05D004870 1.3e-47 195.7 120 85.8
BolC2t09861H Brassica oleracea HOM05D002391 ORTHO05D017667 3.1e-41 174.5 131 65.6
BcaC03g16083 Brassica carinata HOM05D002391 ORTHO05D017667 7.4e-35 153.3 107 69.2
QL11p025959 Quercus lobata HOM05D002391 ORTHO05D004870 1.4e-33 149.1 263 44.1
BcaC01g02750 Brassica carinata HOM05D002391 ORTHO05D004870 5.8e-32 143.7 143 62.2
ECA246G0062 Erigeron canadensis HOM05D002391 ORTHO05D004870 2.5e-30 138.3 96 72.9
MBI12_g48128_MAGBIO Magnolia biondii HOM05D002391 ORTHO05D004870 4.6e-29 134.0 78 89.7
Cfa025151 Carpinus fangiana HOM05D002391 ORTHO05D004870 6.1e-29 133.7 815 20.6
QL08p036835 Quercus lobata HOM05D000041 ORTHO05D000061 2.2e-23 115.2 86 72.1
FAN18G2005 Fragaria x ananassa HOM05D002391 ORTHO05D017667 1.2e-21 109.4 69 73.9
TPR.G25208 Trifolium pratense HOM05D002391 ORTHO05D004870 2.1e-21 108.6 104 60.6
QL06p008100 Quercus lobata HOM05D000161 ORTHO05D000111 5.1e-20 104.0 80 70.0
C03p60940 Brassica napus HOM05D002391 ORTHO05D004870 1.1e-19 102.8 81 71.6
BolC3t18356H Brassica oleracea HOM05D002391 ORTHO05D004870 1.1e-19 102.8 81 71.6
TPR.G22870 Trifolium pratense HOM05D002391 ORTHO05D011575 4.3e-19 100.9 91 61.5
TPR.G19723 Trifolium pratense HOM05D002391 ORTHO05D004870 2.7e-13 81.6 59 71.2
TPR.G9012 Trifolium pratense HOM05D002391 ORTHO05D004870 3.6e-13 81.3 57 71.9
FAN19G0487 Fragaria x ananassa HOM05D002391 ORTHO05D017667 1.0e-12 79.7 52 69.2
C09p52400 Brassica napus HOM05D000073 ORTHO05D017582 3.5e-08 64.7 56 57.1
BolC1t04175H Brassica oleracea HOM05D000073 ORTHO05D017582 3.5e-08 64.7 56 57.1
BolC9t58109H Brassica oleracea HOM05D000073 ORTHO05D017582 3.5e-08 64.7 56 57.1
C09p10850 Brassica napus HOM05D000073 ORTHO05D017582 1.0e-07 63.2 56 55.4
FvH4_5g30911 Fragaria vesca HOM05D002391 ORTHO05D017667 2.9e-07 61.6 47 66.0
Lsat_1_v5_gn_2_25021 Lactuca sativa HOM05D002391 ORTHO05D004870 9.4e-06 56.6 63 54.0


User provided reference genes

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