Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.01G076800 Carya illinoinensis HOM05D006960 ORTHO05D008699 2.9e-61 238.4 124 100.0
Haze_15666 Corylus avellana HOM05D000451 ORTHO05D000351 8.2e-32 140.6 107 71.0
Ciclev10022060m.g Citrus clementina HOM05D006960 ORTHO05D008699 1.1e-31 140.2 111 65.8
QL04p060559 Quercus lobata HOM05D006960 ORTHO05D008699 5.9e-30 134.4 110 67.3
Prupe.2G189500 Prunus persica HOM05D006960 ORTHO05D008699 3.2e-28 128.6 107 67.3
Lalb_Chr06g0163941 Lupinus albus HOM05D006960 ORTHO05D008699 1.6e-27 126.3 110 60.0
Manes.05G022300 Manihot esculenta HOM05D006960 ORTHO05D008699 2.7e-27 125.6 132 55.3
CSS0028122 Camellia sinensis var. sinensis HOM05D006960 ORTHO05D008699 8.0e-27 124.0 110 57.3
vmacro12673 Vaccinium macrocarpon HOM05D006960 ORTHO05D008699 1.8e-26 122.9 112 58.9
Rhsim04G0222700 Rhododendron simsii HOM05D006960 ORTHO05D008699 2.3e-26 122.5 110 61.8
FvH4_7g16680 Fragaria vesca HOM05D006960 ORTHO05D008699 3.0e-26 122.1 110 62.7
Rhsim01G0172900 Rhododendron simsii HOM05D006960 ORTHO05D008699 3.0e-26 122.1 110 61.8
CSS0036785 Camellia sinensis var. sinensis HOM05D006960 ORTHO05D008699 4.0e-26 121.7 110 56.4
Dinv22299 Davidia involucrata HOM05D006960 ORTHO05D008699 4.0e-26 121.7 104 61.5
Atru.chr5.678 Acer truncatum HOM05D006960 ORTHO05D008699 5.2e-26 121.3 107 62.6
FAN01G3090 Fragaria x ananassa HOM05D006960 ORTHO05D008699 1.1e-25 120.2 110 61.8
FAN06G3195 Fragaria x ananassa HOM05D006960 ORTHO05D008699 1.1e-25 120.2 110 61.8
FAN10G0984 Fragaria x ananassa HOM05D006960 ORTHO05D008699 1.1e-25 120.2 110 61.8
FAN06G2002 Fragaria x ananassa HOM05D006960 ORTHO05D008699 2.6e-25 119.0 110 60.9
CANSAT56G1276 Cannabis sativa HOM05D006960 ORTHO05D008699 5.7e-25 117.9 113 59.3
Thecc.01G341400 Theobroma cacao HOM05D006960 ORTHO05D008699 7.5e-25 117.5 130 51.5
Gohir.D11G102000 Gossypium hirsutum HOM05D006960 ORTHO05D008699 4.8e-24 114.8 130 50.8
ECA236G0577 Erigeron canadensis HOM05D006960 ORTHO05D008699 8.2e-24 114.0 110 56.4
Gorai.007G109000 Gossypium raimondii HOM05D006960 ORTHO05D008699 8.2e-24 114.0 130 50.0
TAR629G1073 Trochodendron aralioides HOM05D006960 ORTHO05D008699 8.2e-24 114.0 110 56.4
RcHm_v2.0_Chr1g0359831 Rosa chinensis HOM05D006960 ORTHO05D008699 1.1e-23 113.6 111 59.5
Potri.014G099500 Populus trichocarpa HOM05D006960 ORTHO05D008699 4.1e-23 111.7 129 51.9
Gohir.A11G097200 Gossypium hirsutum HOM05D006960 ORTHO05D008699 9.1e-23 110.5 130 50.0
FAN10G4095 Fragaria x ananassa HOM05D006960 ORTHO05D008699 2.0e-22 109.4 105 59.0
EL10Ac1g00259 Beta vulgaris HOM05D006960 ORTHO05D008699 3.5e-22 108.6 107 55.1
GSVIVG01027159001 Vitis vinifera HOM05D006960 ORTHO05D008699 4.5e-22 108.2 110 58.2
COL.COLO4_21448 Corchorus olitorius HOM05D006960 ORTHO05D008699 1.0e-21 107.1 130 46.9
MD07G1150800 Malus domestica HOM05D006960 ORTHO05D008699 1.3e-21 106.7 108 60.2
Lj5g0001318 Lotus japonicus HOM05D006960 ORTHO05D008699 3.8e-21 105.1 111 54.1
TWI14G0597 Tripterygium wilfordii HOM05D006960 ORTHO05D008699 3.8e-21 105.1 131 50.4
Glyma.20G102700 Glycine max HOM05D006960 ORTHO05D008699 6.5e-21 104.4 110 54.5
Sed0021558 Sechium edule HOM05D006960 ORTHO05D008699 1.1e-20 103.6 110 49.1
ClCG09G009460 Citrullus lanatus HOM05D006960 ORTHO05D008699 1.5e-20 103.2 110 48.2
PGR142G3971 Punica granatum HOM05D006960 ORTHO05D008699 3.2e-20 102.1 120 53.3
Cpa.g.sc46.111 Carica papaya HOM05D006960 ORTHO05D008699 4.2e-20 101.7 114 54.4
Ca_11259_v3 Cicer arietinum L. HOM05D006960 ORTHO05D008699 7.2e-20 100.9 110 50.9
CsaV3_7G025390 Cucumis sativus L. HOM05D006960 ORTHO05D008699 9.4e-20 100.5 110 48.2
MSTRG.17349 Avicennia marina HOM05D006960 ORTHO05D008699 1.6e-19 99.8 115 51.3
Nitab4.5_0004506g0020 Nicotiana tabacum HOM05D006960 ORTHO05D008699 1.6e-19 99.8 110 54.5
Actinidia20248 Actinidia chinensis HOM05D000567 ORTHO05D001981 2.1e-19 99.4 95 51.6
Eucgr.E00049 Eucalyptus grandis HOM05D006960 ORTHO05D008699 2.1e-19 99.4 110 51.8
HanXRQChr06g0170731 Helianthus annuus HOM05D006960 ORTHO05D008699 2.7e-19 99.0 98 52.0
Psat6g234040 Pisum sativum HOM05D006960 ORTHO05D008699 2.7e-19 99.0 110 50.9
Nitab4.5_0000258g0220 Nicotiana tabacum HOM05D006960 ORTHO05D008699 3.6e-19 98.6 110 53.6
VMungo0720G2201 Vigna mungo HOM05D006960 ORTHO05D008699 4.7e-19 98.2 110 51.8
DCAR_021504 Daucus carota HOM05D006960 ORTHO05D008699 6.1e-19 97.8 114 50.9
Phvul.007G014400 Phaseolus vulgaris HOM05D006960 ORTHO05D008699 6.1e-19 97.8 110 52.7
PGSC0003DMG400007011 Solanum tuberosum HOM05D006960 ORTHO05D008699 6.1e-19 97.8 114 53.5
PSO170G4910 Papaver somniferum HOM05D006960 ORTHO05D008699 8.0e-19 97.4 113 48.7
MELO3C024139.2 Cucumis melo HOM05D006960 ORTHO05D008699 1.4e-18 96.7 110 45.5
Hund16718 Selenicereus undatus HOM05D006960 ORTHO05D008699 1.4e-18 96.7 113 47.8
CAN.G1178.29 Capsicum annuum HOM05D006960 ORTHO05D008699 1.8e-18 96.3 114 51.8
PSO063G6262 Papaver somniferum HOM05D006960 ORTHO05D008699 2.3e-18 95.9 113 47.8
Oeu007886.1 Olea europaea HOM05D006960 ORTHO05D008699 5.2e-18 94.7 117 52.1
Oeu014974.1 Olea europaea HOM05D006960 ORTHO05D008699 5.2e-18 94.7 117 52.1
Sc01g0002630 Simmondsia chinensis HOM05D000016 ORTHO05D007083 5.2e-18 94.7 110 46.4
Solyc05g050570.3 Solanum lycopersicum HOM05D006960 ORTHO05D008699 5.2e-18 94.7 108 52.8
Sopen05g029010 Solanum pennellii HOM05D006960 ORTHO05D008699 5.2e-18 94.7 108 52.8
AUR62023452 Chenopodium quinoa HOM05D000040 ORTHO05D000759 1.5e-17 93.2 105 48.6
AUR62004502 Chenopodium quinoa HOM05D006960 ORTHO05D008699 2.0e-17 92.8 105 47.6
AUR62014969 Chenopodium quinoa HOM05D006960 ORTHO05D008699 3.4e-17 92.0 105 48.6
Medtr1g114590 Medicago truncatula HOM05D006960 ORTHO05D008699 5.7e-17 91.3 112 50.9
Migut.B01880 Erythranthe guttata HOM05D006960 ORTHO05D008699 2.8e-16 89.0 113 51.3
Aqoxy6G00316 Aquilegia oxysepala HOM05D006960 ORTHO05D008699 3.7e-16 88.6 111 50.5
Medtr5g015740 Medicago truncatula HOM05D006960 ORTHO05D008699 4.8e-16 88.2 112 50.0
Lsat_1_v5_gn_8_13101 Lactuca sativa HOM05D006960 ORTHO05D008699 8.3e-16 87.4 115 46.1
TPR.G4075 Trifolium pratense HOM05D006960 ORTHO05D008699 8.3e-16 87.4 95 49.5
Cc01_g12480 Coffea canephora HOM05D006960 ORTHO05D008699 1.1e-15 87.0 112 48.2
SalBow3G0783 Salvia bowleyana HOM05D006960 ORTHO05D008699 3.5e-14 82.0 118 46.6
MBI06_g44795_MAGBIO Magnolia biondii HOM05D006960 ORTHO05D008699 1.1e-12 77.0 107 43.9
Sabra14G0073000 Salix brachista HOM05D006960 ORTHO05D008699 3.2e-12 75.5 105 47.6
SGA_v2.0_scaffold22G09984 Striga asiatica HOM05D006960 ORTHO05D008699 3.2e-12 75.5 112 44.6
Gorai.002G097600 Gossypium raimondii HOM05D006960 ORTHO05D018836 2.7e-11 72.4 60 61.7
Gorai.011G078500 Gossypium raimondii HOM05D006960 ORTHO05D008699 4.7e-11 71.6 69 52.2
BraA09t42243Z Brassica rapa HOM05D006960 ORTHO05D008699 6.1e-11 71.2 125 39.2
Gohir.D08G121100 Gossypium hirsutum HOM05D006960 ORTHO05D008699 6.1e-11 71.2 69 53.6
Gohir.D10G162832 Gossypium hirsutum HOM05D006960 ORTHO05D008699 6.1e-11 71.2 60 60.0
Zm00001eb080710 Zea mays HOM05D006960 ORTHO05D008699 1.8e-10 69.7 82 53.7
Aa31LG5G970 Aethionema arabicum HOM05D000451 ORTHO05D000351 2.3e-10 69.3 90 44.4
Gohir.D05G312133 Gossypium hirsutum HOM05D006960 ORTHO05D008699 2.3e-10 69.3 69 52.2
Thhalv10008544m.g Eutrema salsugineum HOM05D006960 ORTHO05D008699 4.0e-10 68.6 127 37.0
BolC8t52877H Brassica oleracea HOM05D006960 ORTHO05D008699 6.8e-10 67.8 125 36.0
Aqoxy3G01066 Aquilegia oxysepala HOM05D006960 ORTHO05D008699 8.8e-10 67.4 77 48.1
Peaxi162Scf00716g00022 Petunia axillaris HOM05D006960 ORTHO05D008699 1.5e-09 66.6 77 50.6
A09p69060 Brassica napus HOM05D006960 ORTHO05D008699 2.0e-09 66.2 114 37.7
C08p53630 Brassica napus HOM05D006960 ORTHO05D008699 2.0e-09 66.2 114 37.7
Nn8g41032 Nelumbo nucifera HOM05D006960 ORTHO05D008699 2.6e-09 65.9 79 51.9
CARHR001180 Cardamine hirsuta HOM05D006960 ORTHO05D008699 4.4e-09 65.1 128 39.1
HPP92_028636 Vanilla planifolia HOM05D006960 ORTHO05D008699 4.4e-09 65.1 104 40.4
Sp1g01000 Schrenkiella parvula HOM05D006960 ORTHO05D008699 5.7e-09 64.7 127 37.0
CAN.G1385.4 Capsicum annuum HOM05D006960 ORTHO05D008699 9.8e-09 63.9 77 51.9
Os04g0460500 Oryza sativa ssp. japonica HOM05D006960 ORTHO05D008699 1.7e-08 63.2 84 46.4
arahy.Tifrunner.gnm1.ann1.CCVT8N Arachis hypogaea HOM05D006960 ORTHO05D008699 8.3e-08 60.8 115 39.1
TAR636G2744 Trochodendron aralioides HOM05D006960 ORTHO05D008699 8.3e-08 60.8 52 61.5
AT1G01290 Arabidopsis thaliana HOM05D006960 ORTHO05D008699 1.4e-07 60.1 148 35.1
Gohir.D01G074900 Gossypium hirsutum HOM05D006960 ORTHO05D008699 1.2e-06 57.0 109 33.0
Carub.0001s0093 Capsella rubella HOM05D006960 ORTHO05D008699 1.6e-06 56.6 142 34.5
unitig_899.g14796 Utricularia gibba HOM05D006960 ORTHO05D008699 4.5e-06 55.1 84 46.4
ATR0602G026 Amborella trichopoda HOM05D006960 ORTHO05D008699 7.7e-06 54.3 70 42.9


User provided reference genes

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