Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.01G073400 Carya illinoinensis HOM05D004918 ORTHO05D005706 3.9e-126 454.9 244 100.0
CiPaw.02G163500 Carya illinoinensis HOM05D004918 ORTHO05D005706 4.3e-101 371.7 244 78.7
Cfa001859 Carpinus fangiana HOM05D004918 ORTHO05D005706 6.2e-100 367.9 244 77.0
QL10p031453 Quercus lobata HOM05D004918 ORTHO05D005706 1.4e-83 313.5 193 76.7
Prupe.3G103300 Prunus persica HOM05D004918 ORTHO05D005706 2.4e-83 312.8 215 74.0
CSS0025832 Camellia sinensis var. sinensis HOM05D004918 ORTHO05D005706 5.5e-80 301.6 210 69.5
RcHm_v2.0_Chr2g0132361 Rosa chinensis HOM05D004918 ORTHO05D005706 7.2e-80 301.2 215 70.2
Ciclev10026430m.g Citrus clementina HOM05D004918 ORTHO05D005706 9.4e-80 300.8 215 67.0
MD12G1013200 Malus domestica HOM05D004918 ORTHO05D005706 9.4e-80 300.8 215 70.7
TPR.G15094 Trifolium pratense HOM05D004918 ORTHO05D005706 7.9e-79 297.7 215 66.5
Dinv23270 Davidia involucrata HOM05D004918 ORTHO05D005706 1.4e-78 297.0 215 68.4
PGR102G0155 Punica granatum HOM05D004918 ORTHO05D005706 1.4e-78 297.0 213 69.0
Hma1.2p1_1914F.1_g307380 Hydrangea macrophylla HOM05D004918 ORTHO05D005706 3.0e-78 295.8 210 69.0
MD14G1138800 Malus domestica HOM05D004918 ORTHO05D005706 3.0e-78 295.8 217 70.0
Actinidia25464 Actinidia chinensis HOM05D004918 ORTHO05D005706 3.9e-78 295.4 209 67.9
CANSAT35G0550 Cannabis sativa HOM05D004918 ORTHO05D005706 2.5e-77 292.7 215 62.8
ClCG10G012810 Citrullus lanatus HOM05D004918 ORTHO05D005706 2.5e-77 292.7 214 66.4
TAR625G0238 Trochodendron aralioides HOM05D004918 ORTHO05D005706 1.7e-76 290.0 214 67.3
FAN09G4697 Fragaria x ananassa HOM05D004918 ORTHO05D005706 3.7e-76 288.9 225 65.3
GSVIVG01016107001 Vitis vinifera HOM05D004918 ORTHO05D005706 3.7e-76 288.9 214 65.9
Manes.11G069000 Manihot esculenta HOM05D004918 ORTHO05D005706 6.3e-76 288.1 215 65.6
Thecc.06G046100 Theobroma cacao HOM05D004918 ORTHO05D005706 1.4e-75 287.0 214 66.4
Potri.003G184701 Populus trichocarpa HOM05D004918 ORTHO05D005706 1.8e-75 286.6 215 65.1
Atru.chr8.1159 Acer truncatum HOM05D004918 ORTHO05D005706 2.4e-75 286.2 215 66.5
Sabra03G0135200 Salix brachista HOM05D004918 ORTHO05D005706 5.3e-75 285.0 215 64.7
Glyma.09G000800 Glycine max HOM05D004918 ORTHO05D005706 6.9e-75 284.6 214 64.0
CsaV3_3G032650 Cucumis sativus L. HOM05D004918 ORTHO05D005706 1.2e-74 283.9 214 64.5
Lj6g0018730 Lotus japonicus HOM05D004918 ORTHO05D005706 1.2e-74 283.9 215 62.8
Atru.chr1.2801 Acer truncatum HOM05D004918 ORTHO05D005706 2.0e-74 283.1 215 65.6
Medtr3g110270 Medicago truncatula HOM05D004918 ORTHO05D005706 4.5e-74 282.0 215 65.1
TWI12G0375 Tripterygium wilfordii HOM05D004918 ORTHO05D005706 1.0e-73 280.8 214 64.5
DCAR_025541 Daucus carota HOM05D004918 ORTHO05D005706 1.3e-73 280.4 214 65.0
VMungo1309G0542 Vigna mungo HOM05D004918 ORTHO05D005706 1.3e-73 280.4 215 64.7
Sc05g0005820 Simmondsia chinensis HOM05D004918 ORTHO05D005706 1.7e-73 280.0 209 64.1
Peaxi162Scf00314g01045 Petunia axillaris HOM05D004918 ORTHO05D005706 5.0e-73 278.5 216 62.5
Sed0025979 Sechium edule HOM05D004918 ORTHO05D005706 1.1e-72 277.3 241 58.1
Phvul.009G194500 Phaseolus vulgaris HOM05D004918 ORTHO05D005706 1.9e-72 276.6 215 62.8
FAN02G2144 Fragaria x ananassa HOM05D004918 ORTHO05D005706 4.2e-72 275.4 236 61.4
Psat5g020280 Pisum sativum HOM05D004918 ORTHO05D005706 5.5e-72 275.0 215 63.3
Duzib192G0308 Durio zibethinus HOM05D004918 ORTHO05D005706 7.2e-72 274.6 215 61.9
Cpa.g.sc14.108 Carica papaya HOM05D004918 ORTHO05D005706 9.4e-72 274.2 215 61.4
Haze_16687 Corylus avellana HOM05D004918 ORTHO05D005706 1.2e-71 273.9 208 71.6
Oeu004556.1 Olea europaea HOM05D004918 ORTHO05D005706 1.6e-71 273.5 214 61.7
Lalb_Chr13g0301111 Lupinus albus HOM05D004918 ORTHO05D005706 2.7e-71 272.7 214 63.6
Nitab4.5_0002700g0180 Nicotiana tabacum HOM05D004918 ORTHO05D005706 1.4e-70 270.4 215 61.4
Nitab4.5_0004738g0120 Nicotiana tabacum HOM05D004918 ORTHO05D005706 1.4e-70 270.4 221 60.6
ECA232G4560 Erigeron canadensis HOM05D004918 ORTHO05D005706 2.3e-70 269.6 215 60.5
Eucgr.F03982 Eucalyptus grandis HOM05D004918 ORTHO05D005706 8.8e-70 267.7 215 64.2
PGSC0003DMG400014153 Solanum tuberosum HOM05D004918 ORTHO05D005706 1.5e-69 266.9 215 60.5
arahy.Tifrunner.gnm1.ann1.T9YNFF Arachis hypogaea HOM05D004918 ORTHO05D005706 2.0e-69 266.5 212 60.8
Nn2g14031 Nelumbo nucifera HOM05D004918 ORTHO05D005706 9.7e-69 264.2 204 61.8
Nn2g12451 Nelumbo nucifera HOM05D004918 ORTHO05D005706 2.2e-68 263.1 212 59.4
Cc04_g05280 Coffea canephora HOM05D004918 ORTHO05D005706 2.8e-68 262.7 214 59.8
Sopen03g036560 Solanum pennellii HOM05D004918 ORTHO05D005706 3.7e-68 262.3 215 59.1
Migut.I00673 Erythranthe guttata HOM05D004918 ORTHO05D005706 4.8e-68 261.9 213 57.7
Cc04_g05650 Coffea canephora HOM05D004918 ORTHO05D005706 8.2e-68 261.2 214 59.3
SGA_v2.0_scaffold419G51286 Striga asiatica HOM05D004918 ORTHO05D005706 8.2e-68 261.2 213 58.2
Gorai.009G122300 Gossypium raimondii HOM05D004918 ORTHO05D005706 2.4e-67 259.6 203 62.1
Gohir.A05G117500 Gossypium hirsutum HOM05D004918 ORTHO05D005706 7.0e-67 258.1 204 61.3
Ah.01g002790 Amaranthus hybridus HOM05D004918 ORTHO05D005706 9.1e-67 257.7 193 62.7
MSTRG.22808 Avicennia marina HOM05D004918 ORTHO05D005706 1.5e-66 256.9 213 58.2
CDE02G0643 Ceratophyllum demersum HOM05D004918 ORTHO05D005706 4.5e-66 255.4 214 58.9
AL1G28210 Arabidopsis lyrata HOM05D004918 ORTHO05D005706 1.0e-65 254.2 204 57.8
HanXRQChr17g0561891 Helianthus annuus HOM05D004918 ORTHO05D005706 1.0e-65 254.2 211 58.3
CARHR016550 Cardamine hirsuta HOM05D004918 ORTHO05D005706 1.4e-64 250.4 203 58.6
Aa31LG7G620 Aethionema arabicum HOM05D004918 ORTHO05D005706 3.2e-64 249.2 203 58.6
Rhsim08G0203200 Rhododendron simsii HOM05D004918 ORTHO05D005706 4.2e-64 248.8 177 69.5
SalBow8G2778 Salvia bowleyana HOM05D004918 ORTHO05D005706 4.2e-64 248.8 219 55.3
MELO3C028676.2 Cucumis melo HOM05D004918 ORTHO05D005706 7.2e-64 248.1 200 60.5
A09p61040 Brassica napus HOM05D004918 ORTHO05D005706 3.6e-63 245.7 212 55.2
Glyma.09G000900 Glycine max HOM05D004918 ORTHO05D005706 3.6e-63 245.7 169 66.3
FAN09G3573 Fragaria x ananassa HOM05D004918 ORTHO05D005706 6.1e-63 245.0 232 58.6
THA.LOC104812419 Tarenaya hassleriana HOM05D004918 ORTHO05D005706 1.0e-62 244.2 215 55.8
arahy.Tifrunner.gnm1.ann1.ZUNL57 Arachis hypogaea HOM05D004918 ORTHO05D005706 1.4e-62 243.8 212 58.5
A08p31410 Brassica napus HOM05D004918 ORTHO05D005706 1.4e-62 243.8 203 57.6
BraA08t35064Z Brassica rapa HOM05D004918 ORTHO05D005706 1.4e-62 243.8 203 57.6
Carub.0001s1585 Capsella rubella HOM05D004918 ORTHO05D005706 1.4e-62 243.8 203 57.1
HanXRQChr10g0298641 Helianthus annuus HOM05D004918 ORTHO05D005706 1.4e-62 243.8 215 57.2
BcaB03g14507 Brassica carinata HOM05D004918 ORTHO05D005706 2.3e-62 243.0 212 55.7
Thhalv10008658m.g Eutrema salsugineum HOM05D004918 ORTHO05D005706 2.3e-62 243.0 202 58.4
THA.LOC104808174 Tarenaya hassleriana HOM05D004918 ORTHO05D005706 2.3e-62 243.0 215 56.7
BcaC07g38802 Brassica carinata HOM05D004918 ORTHO05D005706 5.2e-62 241.9 204 57.8
C05p14240 Brassica napus HOM05D004918 ORTHO05D005706 6.7e-62 241.5 203 59.1
Solyc03g117650.4 Solanum lycopersicum HOM05D004918 ORTHO05D005706 6.7e-62 241.5 215 56.3
BraA09t41477Z Brassica rapa HOM05D004918 ORTHO05D005706 1.5e-61 240.4 212 54.2
BcaC05g25623 Brassica carinata HOM05D004918 ORTHO05D005706 2.0e-61 240.0 203 58.6
C08p44630 Brassica napus HOM05D000031 ORTHO05D007294 2.0e-61 240.0 212 55.2
PSO729G0217 Papaver somniferum HOM05D004918 ORTHO05D005706 2.6e-61 239.6 204 54.9
A06p12070 Brassica napus HOM05D004918 ORTHO05D005706 3.3e-61 239.2 203 58.6
PSO724G0600 Papaver somniferum HOM05D004918 ORTHO05D005706 3.3e-61 239.2 204 54.9
C08p17380 Brassica napus HOM05D004918 ORTHO05D005706 4.4e-61 238.8 204 57.4
BolC8t49364H Brassica oleracea HOM05D004918 ORTHO05D005706 4.4e-61 238.8 204 57.4
PSO017G2949 Papaver somniferum HOM05D004918 ORTHO05D005706 7.4e-61 238.0 204 54.9
Sp1g14360 Schrenkiella parvula HOM05D004918 ORTHO05D005706 7.4e-61 238.0 203 58.6
AT1G16040 Arabidopsis thaliana HOM05D004918 ORTHO05D005706 1.3e-60 237.3 192 57.8
BraA06t24376Z Brassica rapa HOM05D004918 ORTHO05D005706 1.7e-60 236.9 204 58.8
PSO063G6564 Papaver somniferum HOM05D004918 ORTHO05D005706 6.3e-60 235.0 204 53.9
BcaB02g06654 Brassica carinata HOM05D004918 ORTHO05D005706 8.2e-60 234.6 203 57.1
BolC5t30156H Brassica oleracea HOM05D004918 ORTHO05D005706 8.2e-60 234.6 204 57.8
PGSC0003DMG402014462 Solanum tuberosum HOM05D004918 ORTHO05D005706 8.2e-60 234.6 202 55.0
Sopen12g021620 Solanum pennellii HOM05D004918 ORTHO05D005706 5.3e-59 231.9 212 52.8
vmacro19072 Vaccinium macrocarpon HOM05D004918 ORTHO05D005706 9.1e-59 231.1 206 59.2
MBI19_g12142_MAGBIO Magnolia biondii HOM05D004918 ORTHO05D005706 3.5e-58 229.2 215 54.4
HanXRQChr16g0499441 Helianthus annuus HOM05D004918 ORTHO05D005706 4.5e-58 228.8 205 56.1
COL.COLO4_24896 Corchorus olitorius HOM05D004918 ORTHO05D005706 1.0e-57 227.6 203 54.7
Lsat_1_v5_gn_4_85101 Lactuca sativa HOM05D004918 ORTHO05D005706 1.0e-57 227.6 176 61.4
Oeu035883.1 Olea europaea HOM05D004918 ORTHO05D005706 6.5e-57 224.9 176 63.1
Solyc12g042530.2 Solanum lycopersicum HOM05D004918 ORTHO05D005706 8.5e-57 224.6 212 51.9
SalBow8G2909 Salvia bowleyana HOM05D004918 ORTHO05D005706 3.2e-56 222.6 191 57.1
Zm00001eb403520 Zea mays HOM05D004918 ORTHO05D005706 4.2e-56 222.2 201 55.7
HPP92_001544 Vanilla planifolia HOM05D004918 ORTHO05D005706 5.5e-56 221.9 191 57.6
ATR0568G024 Amborella trichopoda HOM05D004918 ORTHO05D005706 1.2e-55 220.7 207 52.2
SEGI_14369 Sequoiadendron giganteum HOM05D004918 ORTHO05D005706 3.6e-55 219.2 193 51.3
BcaB03g13048 Brassica carinata HOM05D004918 ORTHO05D005706 6.1e-55 218.4 231 49.8
BolC8t52009H Brassica oleracea HOM05D000031 ORTHO05D007294 6.7e-54 214.9 237 47.7
CAN.G276.2 Capsicum annuum HOM05D004918 ORTHO05D005706 2.8e-52 209.5 166 61.4
Os03g0129000 Oryza sativa ssp. japonica HOM05D004918 ORTHO05D005706 3.7e-52 209.1 235 46.4
FAN14G3036 Fragaria x ananassa HOM05D004918 ORTHO05D005706 4.5e-50 202.2 256 50.4
Aqoxy4G02614 Aquilegia oxysepala HOM05D004918 ORTHO05D005706 2.9e-49 199.5 135 66.7
SHI05687 Sapria himalayana HOM05D004918 ORTHO05D005706 3.8e-49 199.1 192 47.4
arahy.Tifrunner.gnm1.ann1.BN6NH6 Arachis hypogaea HOM05D004918 ORTHO05D005706 8.8e-46 188.0 212 49.1
arahy.Tifrunner.gnm1.ann1.U5XJV3 Arachis hypogaea HOM05D004918 ORTHO05D005706 8.8e-46 188.0 209 49.8
FvH4_6g28300 Fragaria vesca HOM05D004918 ORTHO05D005706 2.0e-45 186.8 136 72.1
Pp3c8_15970 Physcomitrium patens HOM05D004918 ORTHO05D005706 3.1e-43 179.5 204 44.6
Ca_15577_v3 Cicer arietinum L. HOM05D004918 ORTHO05D005706 2.9e-41 172.9 110 70.9
EL10Ac4g09605 Beta vulgaris HOM05D004918 ORTHO05D005706 9.5e-40 167.9 191 45.0
CAN.G1008.5 Capsicum annuum HOM05D000348 ORTHO05D005706 2.8e-39 166.4 110 69.1
CBR_g41678 Chara braunii HOM05D004918 ORTHO05D005706 2.8e-39 166.4 142 50.7
unitig_62.g23577 Utricularia gibba HOM05D004918 ORTHO05D005706 1.0e-38 164.5 235 39.1
Mapoly0005s0096 Marchantia polymorpha HOM05D004918 ORTHO05D005706 5.2e-38 162.2 191 40.3
SMO351G0301 Selaginella moellendorffii HOM05D004918 ORTHO05D005706 3.7e-28 129.4 158 43.7
AagrBONN_evm.TU.Sc2ySwM_344.4108 Anthoceros agrestis HOM05D004918 ORTHO05D005706 7.0e-27 125.2 99 55.6
Os10g0200800 Oryza sativa ssp. japonica HOM05D004918 ORTHO05D005706 1.5e-21 107.5 76 57.9
Gohir.D05G118400 Gossypium hirsutum HOM05D004918 ORTHO05D005706 4.9e-20 102.4 106 51.9
Zm00001eb002240 Zea mays HOM05D004918 ORTHO05D005706 1.0e-17 94.7 125 48.8
MELO3C000966.2 Cucumis melo HOM05D004918 ORTHO05D005706 8.6e-17 91.7 81 59.3
CAN.G548.17 Capsicum annuum HOM05D002478 ORTHO05D005706 5.6e-16 89.0 95 49.5
Sed0005872 Sechium edule HOM05D004918 ORTHO05D005706 2.1e-15 87.0 81 59.3
CAN.G1986.5 Capsicum annuum HOM05D004918 ORTHO05D005706 6.2e-15 85.5 63 57.1
CAN.G53.21 Capsicum annuum HOM05D002478 ORTHO05D020307 6.2e-15 85.5 98 44.9
CAN.G829.5 Capsicum annuum HOM05D004534 ORTHO05D005706 1.4e-14 84.3 65 55.4
CSS0035645 Camellia sinensis var. sinensis HOM05D004918 ORTHO05D005706 3.1e-14 83.2 82 58.5
BcaC05g25622 Brassica carinata HOM05D004918 ORTHO05D005706 1.2e-13 81.3 44 70.5
AUR62034078 Chenopodium quinoa HOM05D004918 ORTHO05D005706 3.7e-12 76.3 53 64.2
BcaC03g14995 Brassica carinata HOM05D004918 ORTHO05D005706 8.3e-12 75.1 56 53.6
CSS0004145 Camellia sinensis var. sinensis HOM05D004918 ORTHO05D005706 7.1e-11 72.0 79 54.4
AUR62012861 Chenopodium quinoa HOM05D004918 ORTHO05D005706 1.6e-10 70.9 51 62.7
Actinidia08937 Actinidia chinensis HOM05D004918 ORTHO05D005706 4.6e-10 69.3 101 41.6
MELO3C032630.2 Cucumis melo HOM05D004918 ORTHO05D005706 1.0e-09 68.2 66 54.5
CAN.G1235.23 Capsicum annuum HOM05D004918 ORTHO05D005706 1.5e-08 64.3 33 69.7
MCO15G581 Micromonas commoda HOM05D004918 ORTHO05D005706 5.6e-08 62.4 205 28.8
Cfa026120 Carpinus fangiana HOM05D004918 ORTHO05D125238 9.5e-08 61.6 127 32.3


User provided reference genes

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