Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.01G073300 Carya illinoinensis HOM05D007041 ORTHO05D008036 3.3e-65 251.5 123 100.0
CiPaw.02G039100 Carya illinoinensis HOM05D007041 ORTHO05D008036 5.0e-21 104.8 149 47.0
RcHm_v2.0_Chr1g0358991 Rosa chinensis HOM05D007041 ORTHO05D008036 3.3e-17 92.0 137 40.9
FAN03G1744 Fragaria x ananassa HOM05D007041 ORTHO05D008036 1.8e-15 86.3 140 40.0
FvH4_7g16050 Fragaria vesca HOM05D007041 ORTHO05D008036 5.3e-15 84.7 68 60.3
FAN10G1361 Fragaria x ananassa HOM05D007041 ORTHO05D008036 5.3e-15 84.7 68 60.3
Rhsim07G0006100 Rhododendron simsii HOM05D000337 ORTHO05D000297 1.5e-14 83.2 61 62.3
FAN10G2988 Fragaria x ananassa HOM05D007041 ORTHO05D008036 2.6e-14 82.4 68 58.8
FAN06G2039 Fragaria x ananassa HOM05D007041 ORTHO05D008036 3.4e-14 82.0 68 58.8
FAN06G3979 Fragaria x ananassa HOM05D007041 ORTHO05D008036 3.4e-14 82.0 68 58.8
COL.COLO4_06320 Corchorus olitorius HOM05D007041 ORTHO05D008036 2.9e-13 79.0 66 60.6
Prupe.2G184300 Prunus persica HOM05D007041 ORTHO05D008036 5.0e-13 78.2 86 48.8
MD07G1146000 Malus domestica HOM05D007041 ORTHO05D008036 8.5e-13 77.4 84 50.0
Nitab4.5_0007594g0010 Nicotiana tabacum HOM05D007041 ORTHO05D008036 2.5e-12 75.9 93 46.2
Potri.002G168300 Populus trichocarpa HOM05D007041 ORTHO05D008036 3.2e-12 75.5 123 41.5
EL10Ac1g00306 Beta vulgaris HOM05D007041 ORTHO05D008036 4.2e-12 75.1 78 48.7
Sabra14G0070100 Salix brachista HOM05D007041 ORTHO05D008036 9.4e-12 73.9 77 51.9
Manes.02G012400 Manihot esculenta HOM05D007041 ORTHO05D008036 1.2e-11 73.6 61 62.3
Glyma.07G057800 Glycine max HOM05D007041 ORTHO05D008036 1.6e-11 73.2 64 57.8
Manes.02G012350 Manihot esculenta HOM05D007041 ORTHO05D008036 2.1e-11 72.8 61 62.3
Nn1g01816 Nelumbo nucifera HOM05D007041 ORTHO05D008036 2.7e-11 72.4 84 52.4
Carub.0005s2835 Capsella rubella HOM05D007041 ORTHO05D008036 3.6e-11 72.0 59 55.9
CARHR171970 Cardamine hirsuta HOM05D007041 ORTHO05D008036 4.7e-11 71.6 70 51.4
Cpa.g.sc2382.1 Carica papaya HOM05D007041 ORTHO05D008036 4.7e-11 71.6 59 61.0
CSS0039531 Camellia sinensis var. sinensis HOM05D007041 ORTHO05D008036 6.1e-11 71.2 86 44.2
Thhalv10006386m.g Eutrema salsugineum HOM05D007041 ORTHO05D008036 6.1e-11 71.2 63 54.0
Glyma.16G026800 Glycine max HOM05D007041 ORTHO05D008036 6.1e-11 71.2 107 42.1
Nitab4.5_0000305g0050 Nicotiana tabacum HOM05D007041 ORTHO05D008036 7.9e-11 70.9 93 44.1
Sp5g01745 Schrenkiella parvula HOM05D007041 ORTHO05D008036 7.9e-11 70.9 78 48.7
VMungo0331G1585 Vigna mungo HOM05D007041 ORTHO05D008036 7.9e-11 70.9 102 43.1
Potri.014G095600 Populus trichocarpa HOM05D007041 ORTHO05D008036 1.0e-10 70.5 109 43.1
AL5G44060 Arabidopsis lyrata HOM05D007041 ORTHO05D008036 1.4e-10 70.1 59 57.6
A09p53730 Brassica napus HOM05D007041 ORTHO05D008036 1.4e-10 70.1 58 60.3
BraA09t40795Z Brassica rapa HOM05D007041 ORTHO05D008036 1.4e-10 70.1 58 60.3
CANSAT56G1227 Cannabis sativa HOM05D007041 ORTHO05D008036 1.4e-10 70.1 41 80.5
Gohir.D08G147100 Gossypium hirsutum HOM05D007041 ORTHO05D008036 1.8e-10 69.7 111 39.6
Gorai.004G152600 Gossypium raimondii HOM05D007041 ORTHO05D008036 1.8e-10 69.7 111 39.6
Thecc.01G346300 Theobroma cacao HOM05D007041 ORTHO05D008036 1.8e-10 69.7 47 61.7
Actinidia28494 Actinidia chinensis HOM05D000017 ORTHO05D008036 3.9e-10 68.6 100 39.0
Atru.chr5.628 Acer truncatum HOM05D007041 ORTHO05D008036 5.1e-10 68.2 61 57.4
Gohir.D07G144400 Gossypium hirsutum HOM05D007041 ORTHO05D008036 5.1e-10 68.2 110 42.7
Gorai.001G156400 Gossypium raimondii HOM05D007041 ORTHO05D008036 5.1e-10 68.2 110 42.7
Phvul.010G111500 Phaseolus vulgaris HOM05D007041 ORTHO05D008036 5.1e-10 68.2 49 65.3
arahy.Tifrunner.gnm1.ann1.JU2T19 Arachis hypogaea HOM05D007041 ORTHO05D008036 6.7e-10 67.8 89 41.6
C08p36510 Brassica napus HOM05D007041 ORTHO05D008036 6.7e-10 67.8 59 57.6
BolC8t51234H Brassica oleracea HOM05D007041 ORTHO05D008036 6.7e-10 67.8 59 57.6
CSS0049473 Camellia sinensis var. sinensis HOM05D007041 ORTHO05D008036 6.7e-10 67.8 53 60.4
Lj3g0003817 Lotus japonicus HOM05D007041 ORTHO05D008036 8.8e-10 67.4 52 61.5
Manes.05G025400 Manihot esculenta HOM05D007041 ORTHO05D008036 8.8e-10 67.4 87 44.8
Sabra02G0143600 Salix brachista HOM05D007041 ORTHO05D008036 8.8e-10 67.4 125 37.6
AT3G61660 Arabidopsis thaliana HOM05D007041 ORTHO05D008036 1.1e-09 67.0 36 75.0
CSS0019600 Camellia sinensis var. sinensis HOM05D007041 ORTHO05D008036 1.1e-09 67.0 44 65.9
CiPaw.12G084900 Carya illinoinensis HOM05D007041 ORTHO05D008036 1.1e-09 67.0 48 60.4
Nn2g15118 Nelumbo nucifera HOM05D007041 ORTHO05D008036 1.1e-09 67.0 82 50.0
ECA236G3839 Erigeron canadensis HOM05D007041 ORTHO05D008036 1.5e-09 66.6 68 47.1
Lalb_Chr17g0342361 Lupinus albus HOM05D007041 ORTHO05D008036 1.5e-09 66.6 83 45.8
Medtr8g027905 Medicago truncatula HOM05D001941 ORTHO05D008036 2.0e-09 66.2 114 41.2
TAR629G2489 Trochodendron aralioides HOM05D007041 ORTHO05D008036 2.0e-09 66.2 128 40.6
Gohir.A07G139300 Gossypium hirsutum HOM05D007041 ORTHO05D008036 2.6e-09 65.9 110 40.9
HPP92_007621 Vanilla planifolia HOM05D007041 ORTHO05D008036 3.3e-09 65.5 50 60.0
arahy.Tifrunner.gnm1.ann1.LKBY4F Arachis hypogaea HOM05D007041 ORTHO05D008036 4.4e-09 65.1 55 52.7
Oeu007854.1 Olea europaea HOM05D007041 ORTHO05D008036 4.4e-09 65.1 44 63.6
vmacro22517 Vaccinium macrocarpon HOM05D007041 ORTHO05D008036 9.7e-09 63.9 63 52.4
Sopen08g030330 Solanum pennellii HOM05D002045 ORTHO05D002014 1.3e-08 63.5 49 57.1
Peaxi162Scf00843g00001 Petunia axillaris HOM05D007041 ORTHO05D008036 1.7e-08 63.2 46 65.2
Rhsim01G0170500 Rhododendron simsii HOM05D007041 ORTHO05D008036 1.7e-08 63.2 59 49.2
SGA_v2.0_scaffold11G05722 Striga asiatica HOM05D007041 ORTHO05D008036 1.7e-08 63.2 84 45.2
Oeu007855.1 Olea europaea HOM05D007041 ORTHO05D008036 2.2e-08 62.8 79 39.2
QL02p031389 Quercus lobata HOM05D007041 ORTHO05D008036 2.2e-08 62.8 54 53.7
Medtr8g027305 Medicago truncatula HOM05D007041 ORTHO05D008036 2.8e-08 62.4 60 55.0
SalBow3G2736 Salvia bowleyana HOM05D007041 ORTHO05D008036 2.8e-08 62.4 88 40.9
AUR62023489 Chenopodium quinoa HOM05D007041 ORTHO05D008036 3.7e-08 62.0 39 69.2
Glyma.19G254100 Glycine max HOM05D007041 ORTHO05D008036 3.7e-08 62.0 83 43.4
Nn3g19073 Nelumbo nucifera HOM05D007041 ORTHO05D008036 3.7e-08 62.0 68 45.6
TAR636G2915 Trochodendron aralioides HOM05D007041 ORTHO05D008036 3.7e-08 62.0 115 34.8
vmacro22515 Vaccinium macrocarpon HOM05D007041 ORTHO05D008036 3.7e-08 62.0 48 56.2
vmacro22516 Vaccinium macrocarpon HOM05D007041 ORTHO05D008036 3.7e-08 62.0 48 56.2
Migut.B01841 Erythranthe guttata HOM05D007041 ORTHO05D008036 4.8e-08 61.6 38 63.2
Rhsim01G0170200 Rhododendron simsii HOM05D007041 ORTHO05D008036 4.8e-08 61.6 35 65.7
CsaV3_3G008250 Cucumis sativus L. HOM05D007041 ORTHO05D008036 6.3e-08 61.2 105 39.0
Sc01g0010130 Simmondsia chinensis HOM05D007041 ORTHO05D008036 6.3e-08 61.2 37 64.9
arahy.Tifrunner.gnm1.ann1.3XXF02 Arachis hypogaea HOM05D007041 ORTHO05D008036 8.2e-08 60.8 83 44.6
Potri.003G137600 Populus trichocarpa HOM05D007041 ORTHO05D008036 8.2e-08 60.8 48 52.1
TPR.G7661 Trifolium pratense HOM05D007041 ORTHO05D008036 8.2e-08 60.8 83 42.2
PGSC0003DMG400012302 Solanum tuberosum HOM05D007041 ORTHO05D008036 1.1e-07 60.5 49 55.1
Lsat_1_v5_gn_7_2180 Lactuca sativa HOM05D007041 ORTHO05D008036 1.8e-07 59.7 54 53.7
Manes.01G248300 Manihot esculenta HOM05D007041 ORTHO05D008036 2.4e-07 59.3 57 59.6
Medtr8g027915 Medicago truncatula HOM05D007041 ORTHO05D008036 2.4e-07 59.3 63 47.6
Oeu009948.1 Olea europaea HOM05D007041 ORTHO05D008036 2.4e-07 59.3 39 64.1
Sed0010994 Sechium edule HOM05D007041 ORTHO05D008036 3.1e-07 58.9 33 69.7
PGSC0003DMG400000096 Solanum tuberosum HOM05D007041 ORTHO05D008036 3.1e-07 58.9 76 43.4
Thecc.03G293400 Theobroma cacao HOM05D007041 ORTHO05D008036 3.1e-07 58.9 62 48.4
RcHm_v2.0_Chr7g0195411 Rosa chinensis HOM05D017100 ORTHO05D008036 4.1e-07 58.5 44 56.8
Prupe.5G115500 Prunus persica HOM05D007041 ORTHO05D008036 5.3e-07 58.2 103 38.8
Lj1g0010364 Lotus japonicus HOM05D007041 ORTHO05D008036 7.0e-07 57.8 36 63.9
Potri.001G094000 Populus trichocarpa HOM05D007041 ORTHO05D008036 9.1e-07 57.4 52 48.1
Rhsim07G0083800 Rhododendron simsii HOM05D007041 ORTHO05D008036 1.2e-06 57.0 88 37.5
MELO3C006045.2 Cucumis melo HOM05D007041 ORTHO05D008036 1.5e-06 56.6 104 36.5
Zm00001eb310140 Zea mays HOM05D007041 ORTHO05D008036 2.6e-06 55.8 44 56.8
Zm00001eb441140 Zea mays HOM05D007041 ORTHO05D008036 2.6e-06 55.8 44 56.8
Ca_09497_v3 Cicer arietinum L. HOM05D007041 ORTHO05D008036 4.5e-06 55.1 115 37.4
Gohir.A12G234950 Gossypium hirsutum HOM05D007041 ORTHO05D008036 4.5e-06 55.1 44 56.8
Gohir.D12G236050 Gossypium hirsutum HOM05D007041 ORTHO05D008036 4.5e-06 55.1 44 56.8
Gorai.008G252800 Gossypium raimondii HOM05D007041 ORTHO05D008036 4.5e-06 55.1 44 56.8
Medtr7g117120 Medicago truncatula HOM05D007041 ORTHO05D008036 4.5e-06 55.1 51 51.0
Thhalv10001747m.g Eutrema salsugineum HOM05D010682 ORTHO05D012785 7.7e-06 54.3 32 71.9


User provided reference genes

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