Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.01G065300 Carya illinoinensis HOM05D003847 ORTHO05D004976 6.3e-241 837.0 425 100.0
QL04p055042 Quercus lobata HOM05D003847 ORTHO05D004976 6.3e-225 783.9 424 92.7
COL.COLO4_12761 Corchorus olitorius HOM05D003847 ORTHO05D004976 7.0e-224 780.4 425 90.4
MELO3C006089.2 Cucumis melo HOM05D003847 ORTHO05D004976 2.0e-223 778.9 425 91.1
CANSAT56G2934 Cannabis sativa HOM05D003847 ORTHO05D004976 2.3e-222 775.4 425 91.5
Prupe.2G175500 Prunus persica HOM05D003847 ORTHO05D004976 2.3e-222 775.4 425 90.1
GSVIVG01026981001 Vitis vinifera HOM05D003847 ORTHO05D004976 3.8e-222 774.6 425 90.4
Manes.05G031000 Manihot esculenta HOM05D003847 ORTHO05D004976 5.0e-222 774.2 425 90.6
CsaV3_3G008710 Cucumis sativus L. HOM05D003847 ORTHO05D004976 8.6e-222 773.5 425 90.4
Gohir.A11G091500 Gossypium hirsutum HOM05D003847 ORTHO05D004976 8.6e-222 773.5 425 90.1
Gorai.007G102500 Gossypium raimondii HOM05D003847 ORTHO05D004976 2.5e-221 771.9 425 89.6
Potri.002G162700 Populus trichocarpa HOM05D003847 ORTHO05D004976 3.3e-221 771.5 425 90.4
Thecc.01G354200 Theobroma cacao HOM05D003847 ORTHO05D004976 4.3e-221 771.2 425 89.9
Ciclev10020054m.g Citrus clementina HOM05D003847 ORTHO05D004976 7.3e-221 770.4 422 89.8
Potri.014G088900 Populus trichocarpa HOM05D003847 ORTHO05D004976 1.6e-220 769.2 425 90.4
Gohir.D11G096200 Gossypium hirsutum HOM05D003847 ORTHO05D004976 8.0e-220 766.9 425 89.2
CSS0029735 Camellia sinensis var. sinensis HOM05D003847 ORTHO05D004976 1.4e-219 766.1 425 89.2
PGR042G1058 Punica granatum HOM05D003847 ORTHO05D004976 1.4e-219 766.1 425 89.6
Hma1.2p1_0627F.1_g191710 Hydrangea macrophylla HOM05D003847 ORTHO05D004976 1.8e-219 765.8 425 88.9
Sed0007018 Sechium edule HOM05D003847 ORTHO05D004976 4.0e-219 764.6 425 88.9
MD01G1069400 Malus domestica HOM05D003847 ORTHO05D004976 6.8e-219 763.8 425 88.5
VMungo1383G0817 Vigna mungo HOM05D003847 ORTHO05D004976 2.6e-218 761.9 425 88.5
Lalb_Chr04g0259201 Lupinus albus HOM05D003847 ORTHO05D004976 5.7e-218 760.8 425 87.5
Phvul.008G059300 Phaseolus vulgaris HOM05D003847 ORTHO05D004976 5.7e-218 760.8 425 89.2
TWI59G0695 Tripterygium wilfordii HOM05D003847 ORTHO05D004976 7.5e-218 760.4 425 88.0
Eucgr.D02317 Eucalyptus grandis HOM05D003847 ORTHO05D004976 1.3e-217 759.6 425 89.9
Cc02_g38410 Coffea canephora HOM05D003847 ORTHO05D004976 2.9e-217 758.4 425 88.5
RcHm_v2.0_Chr1g0357201 Rosa chinensis HOM05D003847 ORTHO05D004976 2.9e-217 758.4 425 88.5
FAN10G1372 Fragaria x ananassa HOM05D003847 ORTHO05D004976 3.7e-217 758.1 424 88.0
arahy.Tifrunner.gnm1.ann1.9YV9D4 Arachis hypogaea HOM05D003847 ORTHO05D004976 1.1e-216 756.5 422 87.0
FAN06G3510 Fragaria x ananassa HOM05D003847 ORTHO05D004976 1.4e-216 756.1 424 88.0
arahy.Tifrunner.gnm1.ann1.P1PLPP Arachis hypogaea HOM05D003847 ORTHO05D004976 3.2e-216 755.0 422 87.0
Duzib133G1387 Durio zibethinus HOM05D003847 ORTHO05D004976 7.0e-216 753.8 417 89.0
Sabra02G0147800 Salix brachista HOM05D003847 ORTHO05D004976 7.0e-216 753.8 449 85.1
FAN10G2219 Fragaria x ananassa HOM05D003847 ORTHO05D004976 9.2e-216 753.4 424 87.7
Glyma.18G237300 Glycine max HOM05D003847 ORTHO05D004976 1.2e-215 753.1 425 88.0
Solyc01g094930.3 Solanum lycopersicum HOM05D003847 ORTHO05D004976 1.2e-215 753.1 425 86.8
Sopen01g038710 Solanum pennellii HOM05D003847 ORTHO05D004976 2.0e-215 752.3 425 86.6
Glyma.09G255600 Glycine max HOM05D003847 ORTHO05D004976 1.3e-214 749.6 425 87.5
CAN.G78.110 Capsicum annuum HOM05D003847 ORTHO05D004976 1.7e-214 749.2 425 86.1
Actinidia02826 Actinidia chinensis HOM05D003847 ORTHO05D004976 2.3e-214 748.8 425 87.3
Lj1g0024026 Lotus japonicus HOM05D003847 ORTHO05D004976 5.0e-214 747.7 425 86.1
Sabra14G0064600 Salix brachista HOM05D003847 ORTHO05D004976 3.3e-213 745.0 415 89.4
Nn1g01640 Nelumbo nucifera HOM05D003847 ORTHO05D004976 4.3e-213 744.6 425 85.9
DCAR_008629 Daucus carota HOM05D003847 ORTHO05D004976 5.6e-213 744.2 425 86.1
FAN03G1748 Fragaria x ananassa HOM05D003847 ORTHO05D004976 5.6e-213 744.2 438 84.9
DCAR_025211 Daucus carota HOM05D003847 ORTHO05D004976 2.8e-212 741.9 425 86.1
FAN01G0997 Fragaria x ananassa HOM05D003847 ORTHO05D004976 8.0e-212 740.3 414 88.6
Ca_00820_v3 Cicer arietinum L. HOM05D003847 ORTHO05D004976 1.1e-211 740.0 421 86.7
THA.LOC104817033 Tarenaya hassleriana HOM05D003847 ORTHO05D004976 1.1e-211 740.0 422 86.5
Sabra02G0148200 Salix brachista HOM05D003847 ORTHO05D004976 1.4e-211 739.6 471 81.1
Migut.N01455 Erythranthe guttata HOM05D003847 ORTHO05D004976 2.3e-211 738.8 425 85.4
Medtr7g078760 Medicago truncatula HOM05D003847 ORTHO05D004976 2.3e-211 738.8 421 86.5
Lsat_1_v5_gn_4_34641 Lactuca sativa HOM05D003847 ORTHO05D004976 4.0e-211 738.0 425 85.2
AUR62022605 Chenopodium quinoa HOM05D003847 ORTHO05D004976 5.2e-211 737.6 426 85.9
Lj9C587T13 Lonicera japonica HOM05D003847 ORTHO05D004976 6.8e-211 737.3 425 86.4
HanXRQChr17g0562361 Helianthus annuus HOM05D003847 ORTHO05D004976 8.9e-211 736.9 425 85.6
Hund16669 Selenicereus undatus HOM05D003847 ORTHO05D004976 8.9e-211 736.9 426 85.7
THA.LOC104825858 Tarenaya hassleriana HOM05D003847 ORTHO05D004976 8.9e-211 736.9 425 85.9
ECA234G3268 Erigeron canadensis HOM05D003847 ORTHO05D004976 2.6e-210 735.3 424 85.4
BcaC04g24142 Brassica carinata HOM05D003847 ORTHO05D004976 5.8e-210 734.2 425 85.4
A09p00040 Brassica napus HOM05D003847 ORTHO05D004976 5.8e-210 734.2 425 85.6
C09p00660 Brassica napus HOM05D003847 ORTHO05D004976 5.8e-210 734.2 425 85.4
SGA_v2.0_scaffold43G16402 Striga asiatica HOM05D003847 ORTHO05D004976 5.8e-210 734.2 425 84.5
BraA09t35735Z Brassica rapa HOM05D003847 ORTHO05D004976 7.5e-210 733.8 425 85.4
CDE11G0931 Ceratophyllum demersum HOM05D003847 ORTHO05D004976 7.5e-210 733.8 425 84.2
AUR62004399 Chenopodium quinoa HOM05D003847 ORTHO05D004976 7.5e-210 733.8 426 85.2
Thhalv10028603m.g Eutrema salsugineum HOM05D003847 ORTHO05D004976 9.8e-210 733.4 425 85.6
BolC9t53000H Brassica oleracea HOM05D003847 ORTHO05D004976 2.2e-209 732.3 425 84.9
C03p39000 Brassica napus HOM05D003847 ORTHO05D004976 3.7e-209 731.5 425 84.9
BolC3t16172H Brassica oleracea HOM05D003847 ORTHO05D004976 3.7e-209 731.5 425 84.9
BcaB01g02281 Brassica carinata HOM05D003847 ORTHO05D004976 4.9e-209 731.1 425 85.2
TPR.G22298 Trifolium pratense HOM05D003847 ORTHO05D004976 4.9e-209 731.1 421 86.0
BraA03t12370Z Brassica rapa HOM05D003847 ORTHO05D004976 1.9e-208 729.2 425 84.9
Sp6g00820 Schrenkiella parvula HOM05D003847 ORTHO05D004976 5.4e-208 727.6 425 85.2
AT4G01320 Arabidopsis thaliana HOM05D003847 ORTHO05D004976 7.0e-208 727.2 425 85.4
EL10Ac1g00369 Beta vulgaris HOM05D003847 ORTHO05D004976 7.0e-208 727.2 438 83.8
CARHR249000 Cardamine hirsuta HOM05D003847 ORTHO05D004976 7.0e-208 727.2 425 85.4
Sc26g0000820 Simmondsia chinensis HOM05D003847 ORTHO05D004976 1.6e-207 726.1 425 84.2
Carub.0006s3638 Capsella rubella HOM05D003847 ORTHO05D004976 2.7e-207 725.3 425 85.2
CDE09G0314 Ceratophyllum demersum HOM05D003847 ORTHO05D004976 2.7e-207 725.3 425 83.5
Aqoxy5G04080 Aquilegia oxysepala HOM05D003847 ORTHO05D004976 6.0e-207 724.2 425 84.0
BcaC01g06856 Brassica carinata HOM05D003847 ORTHO05D004976 7.8e-207 723.8 420 85.0
BcaB01g02153 Brassica carinata HOM05D003847 ORTHO05D004976 1.0e-206 723.4 420 84.8
ATR0661G289 Amborella trichopoda HOM05D003847 ORTHO05D004976 3.3e-205 718.4 422 82.5
A03p31980 Brassica napus HOM05D003847 ORTHO05D004976 1.4e-203 713.0 415 84.8
MSTRG.28227 Avicennia marina HOM05D003847 ORTHO05D004976 2.3e-203 712.2 425 83.1
RcHm_v2.0_Chr1g0357211 Rosa chinensis HOM05D003847 ORTHO05D004976 3.4e-202 708.4 425 81.6
FAN10G0014 Fragaria x ananassa HOM05D003847 ORTHO05D004976 9.9e-202 706.8 425 81.6
AL6G52080 Arabidopsis lyrata HOM05D003847 ORTHO05D004976 1.3e-201 706.4 413 85.5
FvH4_7g15083 Fragaria vesca HOM05D003847 ORTHO05D004976 1.7e-201 706.1 425 81.6
Zm00001eb187240 Zea mays HOM05D003847 ORTHO05D004976 6.4e-201 704.1 424 81.8
Os02g0680400 Oryza sativa ssp. japonica HOM05D003847 ORTHO05D004976 8.3e-201 703.7 424 81.6
PSO478G2530 Papaver somniferum HOM05D003847 ORTHO05D004976 2.1e-199 699.1 422 82.0
PSO782G0912 Papaver somniferum HOM05D003847 ORTHO05D004976 7.8e-199 697.2 422 81.8
Atru.chr5.1381 Acer truncatum HOM05D003847 ORTHO05D004976 1.0e-198 696.8 420 81.4
ClCG05G001330 Citrullus lanatus HOM05D003847 ORTHO05D004976 3.6e-196 688.3 425 82.4
SEGI_36957 Sequoiadendron giganteum HOM05D003847 ORTHO05D004976 6.2e-196 687.6 422 79.4
Duzib138G0396 Durio zibethinus HOM05D003847 ORTHO05D004976 8.1e-196 687.2 425 81.6
Haze_15549 Corylus avellana HOM05D003847 ORTHO05D004976 1.1e-195 686.8 425 83.1
Dinv43851 Davidia involucrata HOM05D003847 ORTHO05D004976 2.2e-193 679.1 425 80.9
FAN03G0710 Fragaria x ananassa HOM05D003847 ORTHO05D004976 4.9e-193 677.9 419 80.2
MBI04_g26959_MAGBIO Magnolia biondii HOM05D003847 ORTHO05D004976 2.3e-190 669.1 425 80.0
Pp3c4_3300 Physcomitrium patens HOM05D003847 ORTHO05D004976 7.3e-189 664.1 423 76.1
Nitab4.5_0003779g0180 Nicotiana tabacum HOM05D003847 ORTHO05D004976 3.6e-188 661.8 425 78.6
Nitab4.5_0001702g0130 Nicotiana tabacum HOM05D003847 ORTHO05D004976 1.1e-187 660.2 433 77.6
TAR629G0433 Trochodendron aralioides HOM05D003847 ORTHO05D004976 1.8e-187 659.4 416 79.8
AagrBONN_evm.TU.Sc2ySwM_344.5530 Anthoceros agrestis HOM05D003847 ORTHO05D004976 1.2e-186 656.8 423 75.7
Mapoly0151s0045 Marchantia polymorpha HOM05D003847 ORTHO05D004976 2.0e-186 656.0 423 76.6
SalBow5G2471 Salvia bowleyana HOM05D003847 ORTHO05D004976 4.4e-186 654.8 442 75.8
Cfa003885 Carpinus fangiana HOM05D003847 ORTHO05D004976 8.4e-185 650.6 402 83.3
Oeu015226.2 Olea europaea HOM05D003847 ORTHO05D004976 1.9e-184 649.4 413 79.7
arahy.Tifrunner.gnm1.ann1.W45FS6 Arachis hypogaea HOM05D003847 ORTHO05D004976 4.2e-184 648.3 422 77.3
vmacro20904 Vaccinium macrocarpon HOM05D003847 ORTHO05D004976 2.1e-183 646.0 417 78.2
Pp3c12_25070 Physcomitrium patens HOM05D003847 ORTHO05D004976 1.3e-182 643.3 423 74.2
FvH4_7g15084 Fragaria vesca HOM05D003847 ORTHO05D004976 2.3e-182 642.5 422 76.1
Oeu036597.2 Olea europaea HOM05D003847 ORTHO05D004976 1.1e-181 640.2 611 57.6
Nitab4.5_0001269g0010 Nicotiana tabacum HOM05D003847 ORTHO05D004976 3.3e-181 638.6 415 77.3
FAN10G3576 Fragaria x ananassa HOM05D003847 ORTHO05D004976 2.8e-180 635.6 416 76.0
FAN06G0785 Fragaria x ananassa HOM05D003847 ORTHO05D004976 3.6e-180 635.2 412 77.2
Nitab4.5_0011900g0010 Nicotiana tabacum HOM05D003847 ORTHO05D004976 3.6e-180 635.2 475 70.5
FAN06G4494 Fragaria x ananassa HOM05D003847 ORTHO05D004976 6.2e-180 634.4 406 77.8
Psat3g106680 Pisum sativum HOM05D003847 ORTHO05D004976 2.9e-177 625.5 364 85.2
RcHm_v2.0_Chr1g0357271 Rosa chinensis HOM05D003847 ORTHO05D004976 1.4e-176 623.2 410 76.8
SMO364G0773 Selaginella moellendorffii HOM05D003847 ORTHO05D004976 1.3e-174 616.7 425 71.5
TAR375G0471 Trochodendron aralioides HOM05D003847 ORTHO05D004976 5.6e-173 611.3 353 83.3
FAN06G4922 Fragaria x ananassa HOM05D003847 ORTHO05D004976 2.1e-172 609.4 413 75.3
FvH4_7g15081 Fragaria vesca HOM05D003847 ORTHO05D004976 1.1e-171 607.1 360 84.2
Sed0024082 Sechium edule HOM05D003847 ORTHO05D004976 2.0e-170 602.8 340 88.2
Dinv32510 Davidia involucrata HOM05D003847 ORTHO05D004976 9.9e-170 600.5 351 84.9
Atru.chr5.547 Acer truncatum HOM05D003847 ORTHO05D004976 1.4e-168 596.7 344 84.9
HanXRQChr16g0521851 Helianthus annuus HOM05D003847 ORTHO05D004976 2.7e-167 592.4 412 72.3
HanXRQChr16g0521861 Helianthus annuus HOM05D003847 ORTHO05D004976 7.9e-167 590.9 430 70.5
FAN10G3432 Fragaria x ananassa HOM05D003847 ORTHO05D004976 6.2e-164 581.3 403 72.5
vmacro04325 Vaccinium macrocarpon HOM05D003847 ORTHO05D004976 5.3e-163 578.2 431 68.9
Peaxi162Scf00020g01122 Petunia axillaris HOM05D003847 ORTHO05D004976 5.7e-157 558.1 415 69.9
HPP92_022235 Vanilla planifolia HOM05D003847 ORTHO05D004976 6.3e-156 554.7 314 88.2
FAN10G2623 Fragaria x ananassa HOM05D003847 ORTHO05D004976 8.2e-156 554.3 409 70.2
CBR_g23782 Chara braunii HOM05D003847 ORTHO05D004976 2.4e-155 552.7 411 65.7
FAN01G2116 Fragaria x ananassa HOM05D003847 ORTHO05D004976 2.0e-146 523.1 421 67.0
Aa31LG5G720 Aethionema arabicum HOM05D003847 ORTHO05D004976 3.4e-146 522.3 303 84.8
QL12p031965 Quercus lobata HOM05D003847 ORTHO05D004976 5.1e-142 508.4 423 61.0
arahy.Tifrunner.gnm1.ann1.U13Q33 Arachis hypogaea HOM05D003847 ORTHO05D004976 1.9e-136 490.0 281 83.3
TAR636G3069 Trochodendron aralioides HOM05D003847 ORTHO05D004976 6.7e-134 481.5 286 82.2
Medtr8g028680 Medicago truncatula HOM05D003847 ORTHO05D004976 1.1e-133 480.7 444 58.8
Hund27252 Selenicereus undatus HOM05D003847 ORTHO05D004976 3.0e-126 456.1 435 56.6
MSTRG.4846 Avicennia marina HOM05D003847 ORTHO05D004976 4.8e-116 422.2 237 86.5
Cre07.g356150 Chlamydomonas reinhardtii HOM05D003847 ORTHO05D004976 2.4e-115 419.9 431 52.0
Psat2g071920 Pisum sativum HOM05D003847 ORTHO05D004976 7.0e-107 391.7 252 76.6
PRCOL_00003828 Prasinoderma coloniale HOM05D003847 ORTHO05D004976 2.3e-105 386.7 436 48.6
vmacro05292 Vaccinium macrocarpon HOM05D003847 ORTHO05D004976 4.0e-94 349.4 465 45.4
Cpa.g.sc184.22 Carica papaya HOM05D003847 ORTHO05D004976 2.1e-87 327.0 171 93.0
Gohir.A13G099905 Gossypium hirsutum HOM05D003847 ORTHO05D004976 1.2e-85 321.2 199 79.9
Haze_26886 Corylus avellana HOM05D003847 ORTHO05D004976 3.2e-83 313.2 410 42.7
vmacro05290 Vaccinium macrocarpon HOM05D003847 ORTHO05D004976 1.2e-74 284.6 239 63.2
unitig_22.g6721 Utricularia gibba HOM05D001167 ORTHO05D001054 6.9e-70 268.9 155 81.9
Psat1g001760 Pisum sativum HOM05D003847 ORTHO05D004976 1.7e-68 264.2 165 78.2
Hma1.2p1_0456F.1_g156440 Hydrangea macrophylla HOM05D003847 ORTHO05D004976 3.9e-65 253.1 166 74.7
SalBow5G1235 Salvia bowleyana HOM05D003847 ORTHO05D004976 5.8e-61 239.2 253 54.9
CANSAT25G3593 Cannabis sativa HOM05D003847 ORTHO05D004976 1.0e-57 228.4 158 76.6
Atru.chr12.614 Acer truncatum HOM05D003847 ORTHO05D004976 7.4e-56 222.2 161 69.6
RcHm_v2.0_Chr3g0493601 Rosa chinensis HOM05D003847 ORTHO05D004976 3.4e-37 160.2 96 81.2
Mapoly1163s0001 Marchantia polymorpha HOM05D003847 ORTHO05D026554 3.7e-31 140.2 86 79.1
CANSAT25G0211 Cannabis sativa HOM05D003847 ORTHO05D004976 4.8e-31 139.8 86 80.2
SGA_v2.0_scaffold190G40413 Striga asiatica HOM05D003847 ORTHO05D004976 5.0e-28 129.8 124 59.7
COL.COLO4_08374 Corchorus olitorius HOM05D000137 ORTHO05D000382 3.2e-27 127.1 235 36.2
TAR365G1016 Trochodendron aralioides HOM05D000001 ORTHO05D000003 1.1e-24 118.6 72 80.6
Psat5g164800 Pisum sativum HOM05D003847 ORTHO05D004976 4.5e-21 106.7 129 48.8
ATR0763G219 Amborella trichopoda HOM05D003847 ORTHO05D026554 1.1e-19 102.1 58 81.0
HanXRQChr14g0436691 Helianthus annuus HOM05D003847 ORTHO05D025737 2.5e-19 100.9 55 83.6
Medtr4g065940 Medicago truncatula HOM05D003847 ORTHO05D004976 3.2e-19 100.5 95 60.0
Lsat_1_v5_gn_8_14540 Lactuca sativa HOM05D003847 ORTHO05D005301 2.7e-18 97.4 168 38.7
RcHm_v2.0_Chr2g0131551 Rosa chinensis HOM05D003847 ORTHO05D025737 7.4e-16 89.4 55 72.7
RcHm_v2.0_Chr1g0357221 Rosa chinensis HOM05D003847 ORTHO05D026554 1.4e-14 85.1 230 29.6
MBI19_g13733_MAGBIO Magnolia biondii HOM05D003847 ORTHO05D011443 9.1e-14 82.4 48 87.5
Lsat_1_v5_gn_3_43021 Lactuca sativa HOM05D003847 ORTHO05D028506 4.7e-10 70.1 94 43.6
Lsat_1_v5_gn_2_83340 Lactuca sativa HOM05D003847 ORTHO05D028506 6.1e-10 69.7 70 51.4
vmacro05291 Vaccinium macrocarpon HOM05D003847 ORTHO05D026554 1.8e-09 68.2 47 72.3
CAN.G13.12 Capsicum annuum HOM05D002403 ORTHO05D028506 3.0e-09 67.4 42 73.8
BcaC03g16052 Brassica carinata HOM05D003847 ORTHO05D004976 6.8e-09 66.2 38 81.6
Lsat_1_v5_gn_9_59821 Lactuca sativa HOM05D000726 ORTHO05D025737 1.5e-08 65.1 32 87.5
Lsat_1_v5_gn_8_143621 Lactuca sativa HOM05D003847 ORTHO05D028506 2.0e-08 64.7 46 65.2
CAN.G1511.3 Capsicum annuum HOM05D002403 ORTHO05D002724 6.3e-07 59.7 30 86.7


User provided reference genes

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